data_5V7A # _model_server_result.job_id ruPYm9tSA8K-XRQiZ9xUxQ _model_server_result.datetime_utc '2024-11-24 00:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 5V7A # _exptl.entry_id 5V7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.254 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.23 _cell.angle_gamma 90 _cell.entry_id 5V7A _cell.length_a 95.27 _cell.length_b 84.83 _cell.length_c 83.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 A,B,C,D,E,F,G 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -55.187742 0 158.21083 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H9 N5 O3 S' _chem_comp.formula_weight 255.254 _chem_comp.id 8Y7 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 N11 8Y7 sing 1 n n N10 C5 8Y7 doub 2 n n N10 C2 8Y7 sing 3 n n N13 C5 8Y7 sing 4 n n N11 C2 8Y7 sing 5 n y N11 C3 8Y7 sing 6 n y C5 N12 8Y7 sing 7 n n C2 C1 8Y7 doub 8 n y S17 C3 8Y7 sing 9 n n S17 C8 8Y7 sing 10 n n C3 N9 8Y7 doub 11 n y N12 C4 8Y7 sing 12 n n C1 N9 8Y7 sing 13 n y C1 C4 8Y7 sing 14 n n C4 O15 8Y7 doub 15 n n C8 C6 8Y7 sing 16 n n O16 C6 8Y7 doub 17 n n C6 O14 8Y7 sing 18 n n C7 H1 8Y7 sing 19 n n C7 H2 8Y7 sing 20 n n C7 H3 8Y7 sing 21 n n C8 H4 8Y7 sing 22 n n C8 H5 8Y7 sing 23 n n N12 H6 8Y7 sing 24 n n N13 H7 8Y7 sing 25 n n N13 H8 8Y7 sing 26 n n O14 H9 8Y7 sing 27 n n # _atom_sites.entry_id 5V7A _atom_sites.fract_transf_matrix[1][1] 0.010497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003661 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8Y7 A 1 301 2 8Y7 UNL . D 3 CL B 1 301 1 CL CL . E 2 8Y7 B 1 302 1 8Y7 UNL . F 4 HOH A 1 401 97 HOH HOH . F 4 HOH A 2 402 23 HOH HOH . F 4 HOH A 3 403 43 HOH HOH . F 4 HOH A 4 404 17 HOH HOH . F 4 HOH A 5 405 70 HOH HOH . F 4 HOH A 6 406 62 HOH HOH . F 4 HOH A 7 407 31 HOH HOH . F 4 HOH A 8 408 57 HOH HOH . F 4 HOH A 9 409 39 HOH HOH . F 4 HOH A 10 410 8 HOH HOH . F 4 HOH A 11 411 34 HOH HOH . F 4 HOH A 12 412 61 HOH HOH . F 4 HOH A 13 413 99 HOH HOH . F 4 HOH A 14 414 106 HOH HOH . F 4 HOH A 15 415 36 HOH HOH . F 4 HOH A 16 416 94 HOH HOH . F 4 HOH A 17 417 38 HOH HOH . F 4 HOH A 18 418 98 HOH HOH . F 4 HOH A 19 419 69 HOH HOH . F 4 HOH A 20 420 53 HOH HOH . F 4 HOH A 21 421 74 HOH HOH . F 4 HOH A 22 422 52 HOH HOH . F 4 HOH A 23 423 44 HOH HOH . F 4 HOH A 24 424 33 HOH HOH . F 4 HOH A 25 425 58 HOH HOH . F 4 HOH A 26 426 48 HOH HOH . F 4 HOH A 27 427 59 HOH HOH . F 4 HOH A 28 428 42 HOH HOH . F 4 HOH A 29 429 27 HOH HOH . F 4 HOH A 30 430 75 HOH HOH . F 4 HOH A 31 431 67 HOH HOH . F 4 HOH A 32 432 22 HOH HOH . F 4 HOH A 33 433 96 HOH HOH . F 4 HOH A 34 434 1 HOH HOH . F 4 HOH A 35 435 37 HOH HOH . F 4 HOH A 36 436 54 HOH HOH . F 4 HOH A 37 437 65 HOH HOH . F 4 HOH A 38 438 29 HOH HOH . F 4 HOH A 39 439 2 HOH HOH . F 4 HOH A 40 440 66 HOH HOH . F 4 HOH A 41 441 50 HOH HOH . F 4 HOH A 42 442 56 HOH HOH . F 4 HOH A 43 443 55 HOH HOH . F 4 HOH A 44 444 51 HOH HOH . F 4 HOH A 45 445 49 HOH HOH . F 4 HOH A 46 446 100 HOH HOH . F 4 HOH A 47 447 68 HOH HOH . F 4 HOH A 48 448 26 HOH HOH . F 4 HOH A 49 449 24 HOH HOH . F 4 HOH A 50 450 105 HOH HOH . F 4 HOH A 51 451 30 HOH HOH . F 4 HOH A 52 452 77 HOH HOH . F 4 HOH A 53 453 102 HOH HOH . F 4 HOH A 54 454 64 HOH HOH . F 4 HOH A 55 455 60 HOH HOH . F 4 HOH A 56 456 71 HOH HOH . G 4 HOH B 1 401 81 HOH HOH . G 4 HOH B 2 402 89 HOH HOH . G 4 HOH B 3 403 78 HOH HOH . G 4 HOH B 4 404 93 HOH HOH . G 4 HOH B 5 405 10 HOH HOH . G 4 HOH B 6 406 15 HOH HOH . G 4 HOH B 7 407 91 HOH HOH . G 4 HOH B 8 408 79 HOH HOH . G 4 HOH B 9 409 85 HOH HOH . G 4 HOH B 10 410 9 HOH HOH . G 4 HOH B 11 411 16 HOH HOH . G 4 HOH B 12 412 103 HOH HOH . G 4 HOH B 13 413 7 HOH HOH . G 4 HOH B 14 414 14 HOH HOH . G 4 HOH B 15 415 95 HOH HOH . G 4 HOH B 16 416 19 HOH HOH . G 4 HOH B 17 417 20 HOH HOH . G 4 HOH B 18 418 104 HOH HOH . G 4 HOH B 19 419 28 HOH HOH . G 4 HOH B 20 420 32 HOH HOH . G 4 HOH B 21 421 63 HOH HOH . G 4 HOH B 22 422 84 HOH HOH . G 4 HOH B 23 423 11 HOH HOH . G 4 HOH B 24 424 88 HOH HOH . G 4 HOH B 25 425 25 HOH HOH . G 4 HOH B 26 426 40 HOH HOH . G 4 HOH B 27 427 101 HOH HOH . G 4 HOH B 28 428 4 HOH HOH . G 4 HOH B 29 429 6 HOH HOH . G 4 HOH B 30 430 72 HOH HOH . G 4 HOH B 31 431 12 HOH HOH . G 4 HOH B 32 432 41 HOH HOH . G 4 HOH B 33 433 86 HOH HOH . G 4 HOH B 34 434 80 HOH HOH . G 4 HOH B 35 435 46 HOH HOH . G 4 HOH B 36 436 5 HOH HOH . G 4 HOH B 37 437 13 HOH HOH . G 4 HOH B 38 438 35 HOH HOH . G 4 HOH B 39 439 21 HOH HOH . G 4 HOH B 40 440 82 HOH HOH . G 4 HOH B 41 441 73 HOH HOH . G 4 HOH B 42 442 90 HOH HOH . G 4 HOH B 43 443 3 HOH HOH . G 4 HOH B 44 444 45 HOH HOH . G 4 HOH B 45 445 18 HOH HOH . G 4 HOH B 46 446 92 HOH HOH . G 4 HOH B 47 447 83 HOH HOH . G 4 HOH B 48 448 76 HOH HOH . G 4 HOH B 49 449 87 HOH HOH . G 4 HOH B 50 450 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8Y7 . . . E 2 -2.575 0.762 68.583 1 30.59 ? C1 8Y7 302 B 1 HETATM 2 C C2 8Y7 . . . E 2 -3.154 0.749 67.345 1 29 ? C2 8Y7 302 B 1 HETATM 3 C C3 8Y7 . . . E 2 -2.671 -1.262 68.044 1 32.56 ? C3 8Y7 302 B 1 HETATM 4 C C4 8Y7 . . . E 2 -2.343 1.989 69.256 1 28.77 ? C4 8Y7 302 B 1 HETATM 5 C C5 8Y7 . . . E 2 -3.356 2.917 67.213 1 28.44 ? C5 8Y7 302 B 1 HETATM 6 C C6 8Y7 . . . E 2 -2.776 -3.709 70.698 1 33.54 ? C6 8Y7 302 B 1 HETATM 7 C C7 8Y7 . . . E 2 -3.757 -1.098 65.76 1 30.25 ? C7 8Y7 302 B 1 HETATM 8 C C8 8Y7 . . . E 2 -1.766 -3.305 69.616 1 35.49 ? C8 8Y7 302 B 1 HETATM 9 N N9 8Y7 . . . E 2 -2.271 -0.487 69.036 1 31.95 ? N9 8Y7 302 B 1 HETATM 10 N N10 8Y7 . . . E 2 -3.566 1.783 66.611 1 27.27 ? N10 8Y7 302 B 1 HETATM 11 N N11 8Y7 . . . E 2 -3.219 -0.567 67.002 1 29.91 ? N11 8Y7 302 B 1 HETATM 12 N N12 8Y7 . . . E 2 -2.775 3.034 68.474 1 29.14 ? N12 8Y7 302 B 1 HETATM 13 N N13 8Y7 . . . E 2 -3.701 4.112 66.643 1 26.97 ? N13 8Y7 302 B 1 HETATM 14 O O14 8Y7 . . . E 2 -2.204 -4.143 71.731 1 40.14 ? O14 8Y7 302 B 1 HETATM 15 O O15 8Y7 . . . E 2 -1.836 2.075 70.367 1 28.31 ? O15 8Y7 302 B 1 HETATM 16 O O16 8Y7 . . . E 2 -4.019 -3.604 70.507 1 32.56 ? O16 8Y7 302 B 1 HETATM 17 S S17 8Y7 . . . E 2 -2.564 -2.982 68.003 1 33.88 ? S17 8Y7 302 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 672 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #