data_5V8P # _model_server_result.job_id JN2Qb5frf0tCNRDh30jJQA _model_server_result.datetime_utc '2024-11-09 01:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5V8P # _exptl.entry_id 5V8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.6 _cell.angle_gamma 90 _cell.entry_id 5V8P _cell.length_a 73.172 _cell.length_b 67.327 _cell.length_c 98.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 243 A HIS 223 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A NE2 HIS 247 A HIS 227 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A OE1 GLU 282 A GLU 262 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 C ZN ZN . A ZN 501 1_555 D S17 90G . A 90G 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 B NE2 HIS 243 B HIS 223 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 B NE2 HIS 247 B HIS 227 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 B OE1 GLU 282 B GLU 262 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 B OE2 GLU 282 B GLU 262 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc9 E S17 90G . B 90G 501 1_555 F ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V8P _atom_sites.fract_transf_matrix[1][1] 0.013666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 500 ZN ZN . D 3 90G A 1 502 600 90G 143 . E 3 90G B 1 501 600 90G 143 . F 2 ZN B 1 502 500 ZN ZN . G 4 HOH A 1 601 92 HOH HOH . G 4 HOH A 2 602 52 HOH HOH . G 4 HOH A 3 603 84 HOH HOH . G 4 HOH A 4 604 70 HOH HOH . G 4 HOH A 5 605 48 HOH HOH . G 4 HOH A 6 606 3 HOH HOH . G 4 HOH A 7 607 64 HOH HOH . G 4 HOH A 8 608 93 HOH HOH . G 4 HOH A 9 609 11 HOH HOH . G 4 HOH A 10 610 1 HOH HOH . G 4 HOH A 11 611 16 HOH HOH . G 4 HOH A 12 612 8 HOH HOH . G 4 HOH A 13 613 15 HOH HOH . G 4 HOH A 14 614 73 HOH HOH . G 4 HOH A 15 615 65 HOH HOH . G 4 HOH A 16 616 91 HOH HOH . G 4 HOH A 17 617 57 HOH HOH . G 4 HOH A 18 618 20 HOH HOH . G 4 HOH A 19 619 67 HOH HOH . G 4 HOH A 20 620 34 HOH HOH . G 4 HOH A 21 621 53 HOH HOH . G 4 HOH A 22 622 33 HOH HOH . G 4 HOH A 23 623 2 HOH HOH . G 4 HOH A 24 624 35 HOH HOH . G 4 HOH A 25 625 7 HOH HOH . G 4 HOH A 26 626 31 HOH HOH . G 4 HOH A 27 627 22 HOH HOH . G 4 HOH A 28 628 21 HOH HOH . G 4 HOH A 29 629 85 HOH HOH . G 4 HOH A 30 630 86 HOH HOH . G 4 HOH A 31 631 76 HOH HOH . G 4 HOH A 32 632 102 HOH HOH . G 4 HOH A 33 633 66 HOH HOH . G 4 HOH A 34 634 79 HOH HOH . G 4 HOH A 35 635 94 HOH HOH . G 4 HOH A 36 636 72 HOH HOH . G 4 HOH A 37 637 97 HOH HOH . G 4 HOH A 38 638 47 HOH HOH . G 4 HOH A 39 639 100 HOH HOH . G 4 HOH A 40 640 99 HOH HOH . H 4 HOH B 1 601 68 HOH HOH . H 4 HOH B 2 602 77 HOH HOH . H 4 HOH B 3 603 62 HOH HOH . H 4 HOH B 4 604 55 HOH HOH . H 4 HOH B 5 605 69 HOH HOH . H 4 HOH B 6 606 74 HOH HOH . H 4 HOH B 7 607 88 HOH HOH . H 4 HOH B 8 608 27 HOH HOH . H 4 HOH B 9 609 71 HOH HOH . H 4 HOH B 10 610 63 HOH HOH . H 4 HOH B 11 611 9 HOH HOH . H 4 HOH B 12 612 36 HOH HOH . H 4 HOH B 13 613 58 HOH HOH . H 4 HOH B 14 614 44 HOH HOH . H 4 HOH B 15 615 39 HOH HOH . H 4 HOH B 16 616 24 HOH HOH . H 4 HOH B 17 617 45 HOH HOH . H 4 HOH B 18 618 89 HOH HOH . H 4 HOH B 19 619 28 HOH HOH . H 4 HOH B 20 620 14 HOH HOH . H 4 HOH B 21 621 51 HOH HOH . H 4 HOH B 22 622 42 HOH HOH . H 4 HOH B 23 623 90 HOH HOH . H 4 HOH B 24 624 17 HOH HOH . H 4 HOH B 25 625 5 HOH HOH . H 4 HOH B 26 626 60 HOH HOH . H 4 HOH B 27 627 50 HOH HOH . H 4 HOH B 28 628 29 HOH HOH . H 4 HOH B 29 629 54 HOH HOH . H 4 HOH B 30 630 12 HOH HOH . H 4 HOH B 31 631 83 HOH HOH . H 4 HOH B 32 632 6 HOH HOH . H 4 HOH B 33 633 4 HOH HOH . H 4 HOH B 34 634 82 HOH HOH . H 4 HOH B 35 635 18 HOH HOH . H 4 HOH B 36 636 43 HOH HOH . H 4 HOH B 37 637 59 HOH HOH . H 4 HOH B 38 638 23 HOH HOH . H 4 HOH B 39 639 26 HOH HOH . H 4 HOH B 40 640 25 HOH HOH . H 4 HOH B 41 641 10 HOH HOH . H 4 HOH B 42 642 30 HOH HOH . H 4 HOH B 43 643 38 HOH HOH . H 4 HOH B 44 644 32 HOH HOH . H 4 HOH B 45 645 46 HOH HOH . H 4 HOH B 46 646 61 HOH HOH . H 4 HOH B 47 647 87 HOH HOH . H 4 HOH B 48 648 80 HOH HOH . H 4 HOH B 49 649 13 HOH HOH . H 4 HOH B 50 650 49 HOH HOH . H 4 HOH B 51 651 40 HOH HOH . H 4 HOH B 52 652 41 HOH HOH . H 4 HOH B 53 653 56 HOH HOH . H 4 HOH B 54 654 81 HOH HOH . H 4 HOH B 55 655 98 HOH HOH . H 4 HOH B 56 656 78 HOH HOH . H 4 HOH B 57 657 37 HOH HOH . H 4 HOH B 58 658 19 HOH HOH . H 4 HOH B 59 659 96 HOH HOH . H 4 HOH B 60 660 95 HOH HOH . H 4 HOH B 61 661 75 HOH HOH . H 4 HOH B 62 662 101 HOH HOH . H 4 HOH B 63 663 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.655 _atom_site.Cartn_y -37.509 _atom_site.Cartn_z -21.895 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #