data_5V8Q
#
_model_server_result.job_id            6ln7LTgAiGhTw0ieL6CNmA 
_model_server_result.datetime_utc      '2025-04-26 19:16:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    5V8Q 
#
_exptl.entry_id    5V8Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V8Q 
_cell.length_a            54.747 
_cell.length_b            65.557 
_cell.length_c            70.941 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             174 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              844 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             182 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              852 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.043 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 164 n n 
C1 C2 GOL sing 165 n n 
C1 H11 GOL sing 166 n n 
C1 H12 GOL sing 167 n n 
O1 HO1 GOL sing 168 n n 
C2 O2 GOL sing 169 n n 
C2 C3 GOL sing 170 n n 
C2 H2 GOL sing 171 n n 
O2 HO2 GOL sing 172 n n 
C3 O3 GOL sing 173 n n 
C3 H31 GOL sing 174 n n 
C3 H32 GOL sing 175 n n 
O3 HO3 GOL sing 176 n n 
#
_atom_sites.entry_id                     5V8Q 
_atom_sites.fract_transf_matrix[1][1]    0.018266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015254 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1001 161 GOL GOL . 
C 2 GOL A 1 1002 162 GOL GOL . 
D 2 GOL A 1 1003 163 GOL GOL . 
E 3 97A A 1 1004 1 97A LIG . 
F 4 HOH A 1 1101 114 HOH HOH . 
F 4 HOH A 2 1102 115 HOH HOH . 
F 4 HOH A 3 1103 130 HOH HOH . 
F 4 HOH A 4 1104 142 HOH HOH . 
F 4 HOH A 5 1105 150 HOH HOH . 
F 4 HOH A 6 1106 111 HOH HOH . 
F 4 HOH A 7 1107 65 HOH HOH . 
F 4 HOH A 8 1108 82 HOH HOH . 
F 4 HOH A 9 1109 141 HOH HOH . 
F 4 HOH A 10 1110 109 HOH HOH . 
F 4 HOH A 11 1111 133 HOH HOH . 
F 4 HOH A 12 1112 7 HOH HOH . 
F 4 HOH A 13 1113 119 HOH HOH . 
F 4 HOH A 14 1114 17 HOH HOH . 
F 4 HOH A 15 1115 55 HOH HOH . 
F 4 HOH A 16 1116 147 HOH HOH . 
F 4 HOH A 17 1117 103 HOH HOH . 
F 4 HOH A 18 1118 105 HOH HOH . 
F 4 HOH A 19 1119 160 HOH HOH . 
F 4 HOH A 20 1120 46 HOH HOH . 
F 4 HOH A 21 1121 88 HOH HOH . 
F 4 HOH A 22 1122 47 HOH HOH . 
F 4 HOH A 23 1123 11 HOH HOH . 
F 4 HOH A 24 1124 126 HOH HOH . 
F 4 HOH A 25 1125 66 HOH HOH . 
F 4 HOH A 26 1126 56 HOH HOH . 
F 4 HOH A 27 1127 15 HOH HOH . 
F 4 HOH A 28 1128 87 HOH HOH . 
F 4 HOH A 29 1129 99 HOH HOH . 
F 4 HOH A 30 1130 63 HOH HOH . 
F 4 HOH A 31 1131 29 HOH HOH . 
F 4 HOH A 32 1132 40 HOH HOH . 
F 4 HOH A 33 1133 124 HOH HOH . 
F 4 HOH A 34 1134 2 HOH HOH . 
F 4 HOH A 35 1135 14 HOH HOH . 
F 4 HOH A 36 1136 80 HOH HOH . 
F 4 HOH A 37 1137 116 HOH HOH . 
F 4 HOH A 38 1138 12 HOH HOH . 
F 4 HOH A 39 1139 13 HOH HOH . 
F 4 HOH A 40 1140 1 HOH HOH . 
F 4 HOH A 41 1141 140 HOH HOH . 
F 4 HOH A 42 1142 28 HOH HOH . 
F 4 HOH A 43 1143 43 HOH HOH . 
F 4 HOH A 44 1144 112 HOH HOH . 
F 4 HOH A 45 1145 36 HOH HOH . 
F 4 HOH A 46 1146 89 HOH HOH . 
F 4 HOH A 47 1147 23 HOH HOH . 
F 4 HOH A 48 1148 78 HOH HOH . 
F 4 HOH A 49 1149 27 HOH HOH . 
F 4 HOH A 50 1150 135 HOH HOH . 
F 4 HOH A 51 1151 132 HOH HOH . 
F 4 HOH A 52 1152 95 HOH HOH . 
F 4 HOH A 53 1153 64 HOH HOH . 
F 4 HOH A 54 1154 35 HOH HOH . 
F 4 HOH A 55 1155 107 HOH HOH . 
F 4 HOH A 56 1156 20 HOH HOH . 
F 4 HOH A 57 1157 24 HOH HOH . 
F 4 HOH A 58 1158 121 HOH HOH . 
F 4 HOH A 59 1159 54 HOH HOH . 
F 4 HOH A 60 1160 102 HOH HOH . 
F 4 HOH A 61 1161 32 HOH HOH . 
F 4 HOH A 62 1162 71 HOH HOH . 
F 4 HOH A 63 1163 136 HOH HOH . 
F 4 HOH A 64 1164 86 HOH HOH . 
F 4 HOH A 65 1165 69 HOH HOH . 
F 4 HOH A 66 1166 50 HOH HOH . 
F 4 HOH A 67 1167 19 HOH HOH . 
F 4 HOH A 68 1168 74 HOH HOH . 
F 4 HOH A 69 1169 25 HOH HOH . 
F 4 HOH A 70 1170 18 HOH HOH . 
F 4 HOH A 71 1171 139 HOH HOH . 
F 4 HOH A 72 1172 39 HOH HOH . 
F 4 HOH A 73 1173 21 HOH HOH . 
F 4 HOH A 74 1174 93 HOH HOH . 
F 4 HOH A 75 1175 72 HOH HOH . 
F 4 HOH A 76 1176 79 HOH HOH . 
F 4 HOH A 77 1177 113 HOH HOH . 
F 4 HOH A 78 1178 58 HOH HOH . 
F 4 HOH A 79 1179 156 HOH HOH . 
F 4 HOH A 80 1180 30 HOH HOH . 
F 4 HOH A 81 1181 127 HOH HOH . 
F 4 HOH A 82 1182 42 HOH HOH . 
F 4 HOH A 83 1183 92 HOH HOH . 
F 4 HOH A 84 1184 5 HOH HOH . 
F 4 HOH A 85 1185 10 HOH HOH . 
F 4 HOH A 86 1186 68 HOH HOH . 
F 4 HOH A 87 1187 37 HOH HOH . 
F 4 HOH A 88 1188 26 HOH HOH . 
F 4 HOH A 89 1189 49 HOH HOH . 
F 4 HOH A 90 1190 134 HOH HOH . 
F 4 HOH A 91 1191 120 HOH HOH . 
F 4 HOH A 92 1192 117 HOH HOH . 
F 4 HOH A 93 1193 59 HOH HOH . 
F 4 HOH A 94 1194 6 HOH HOH . 
F 4 HOH A 95 1195 4 HOH HOH . 
F 4 HOH A 96 1196 96 HOH HOH . 
F 4 HOH A 97 1197 122 HOH HOH . 
F 4 HOH A 98 1198 76 HOH HOH . 
F 4 HOH A 99 1199 81 HOH HOH . 
F 4 HOH A 100 1200 97 HOH HOH . 
F 4 HOH A 101 1201 8 HOH HOH . 
F 4 HOH A 102 1202 57 HOH HOH . 
F 4 HOH A 103 1203 143 HOH HOH . 
F 4 HOH A 104 1204 31 HOH HOH . 
F 4 HOH A 105 1205 9 HOH HOH . 
F 4 HOH A 106 1206 108 HOH HOH . 
F 4 HOH A 107 1207 106 HOH HOH . 
F 4 HOH A 108 1208 34 HOH HOH . 
F 4 HOH A 109 1209 85 HOH HOH . 
F 4 HOH A 110 1210 61 HOH HOH . 
F 4 HOH A 111 1211 3 HOH HOH . 
F 4 HOH A 112 1212 154 HOH HOH . 
F 4 HOH A 113 1213 51 HOH HOH . 
F 4 HOH A 114 1214 33 HOH HOH . 
F 4 HOH A 115 1215 128 HOH HOH . 
F 4 HOH A 116 1216 53 HOH HOH . 
F 4 HOH A 117 1217 83 HOH HOH . 
F 4 HOH A 118 1218 45 HOH HOH . 
F 4 HOH A 119 1219 48 HOH HOH . 
F 4 HOH A 120 1220 73 HOH HOH . 
F 4 HOH A 121 1221 94 HOH HOH . 
F 4 HOH A 122 1222 138 HOH HOH . 
F 4 HOH A 123 1223 101 HOH HOH . 
F 4 HOH A 124 1224 125 HOH HOH . 
F 4 HOH A 125 1225 98 HOH HOH . 
F 4 HOH A 126 1226 22 HOH HOH . 
F 4 HOH A 127 1227 70 HOH HOH . 
F 4 HOH A 128 1228 149 HOH HOH . 
F 4 HOH A 129 1229 44 HOH HOH . 
F 4 HOH A 130 1230 118 HOH HOH . 
F 4 HOH A 131 1231 75 HOH HOH . 
F 4 HOH A 132 1232 148 HOH HOH . 
F 4 HOH A 133 1233 16 HOH HOH . 
F 4 HOH A 134 1234 60 HOH HOH . 
F 4 HOH A 135 1235 155 HOH HOH . 
F 4 HOH A 136 1236 123 HOH HOH . 
F 4 HOH A 137 1237 38 HOH HOH . 
F 4 HOH A 138 1238 41 HOH HOH . 
F 4 HOH A 139 1239 77 HOH HOH . 
F 4 HOH A 140 1240 131 HOH HOH . 
F 4 HOH A 141 1241 158 HOH HOH . 
F 4 HOH A 142 1242 144 HOH HOH . 
F 4 HOH A 143 1243 129 HOH HOH . 
F 4 HOH A 144 1244 62 HOH HOH . 
F 4 HOH A 145 1245 153 HOH HOH . 
F 4 HOH A 146 1246 151 HOH HOH . 
F 4 HOH A 147 1247 152 HOH HOH . 
F 4 HOH A 148 1248 137 HOH HOH . 
F 4 HOH A 149 1249 146 HOH HOH . 
F 4 HOH A 150 1250 110 HOH HOH . 
F 4 HOH A 151 1251 52 HOH HOH . 
F 4 HOH A 152 1252 157 HOH HOH . 
F 4 HOH A 153 1253 91 HOH HOH . 
F 4 HOH A 154 1254 104 HOH HOH . 
F 4 HOH A 155 1255 90 HOH HOH . 
F 4 HOH A 156 1256 84 HOH HOH . 
F 4 HOH A 157 1257 159 HOH HOH . 
F 4 HOH A 158 1258 67 HOH HOH . 
F 4 HOH A 159 1259 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 31.848 -6.528 -10.69 1 29.07 ? C1 GOL 1002 A 1 
HETATM 2 O O1 GOL . . . C 2 32.823 -5.562 -10.273 1 30.8 ? O1 GOL 1002 A 1 
HETATM 3 C C2 GOL . . . C 2 30.664 -6.498 -9.724 1 30.16 ? C2 GOL 1002 A 1 
HETATM 4 O O2 GOL . . . C 2 29.974 -5.249 -9.746 1 32.57 ? O2 GOL 1002 A 1 
HETATM 5 C C3 GOL . . . C 2 29.632 -7.545 -10.043 1 22.77 ? C3 GOL 1002 A 1 
HETATM 6 O O3 GOL . . . C 2 29.007 -7.964 -8.83 1 30.21 ? O3 GOL 1002 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           597 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#