data_5V8V # _model_server_result.job_id GT-VS-8hGkmhR0LDU9WgqQ _model_server_result.datetime_utc '2024-11-17 01:57:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5V8V # _exptl.entry_id 5V8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.671 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "methyl [(4S)-4-(3'-ethyl-6-fluoro[1,1'-biphenyl]-2-yl)-4-hydroxy-4-{(3R)-1-[4-(methylamino)butanoyl]piperidin-3-yl}butyl]carbamate" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V8V _cell.length_a 54.367 _cell.length_b 99.014 _cell.length_c 147.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 117 1_555 A SG CYS 55 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 214 A CYS 283 1_555 A SG CYS 218 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 256 A CYS 325 1_555 A SG CYS 293 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 B SG CYS 48 B CYS 117 1_555 B SG CYS 55 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 214 B CYS 283 1_555 B SG CYS 218 B CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 256 B CYS 325 1_555 B SG CYS 293 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 72 A ASN 141 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B ND2 ASN 72 B ASN 141 1_555 F C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C30 H42 F N3 O4' _chem_comp.formula_weight 527.671 _chem_comp.id 90D _chem_comp.mon_nstd_flag . _chem_comp.name "methyl [(4S)-4-(3'-ethyl-6-fluoro[1,1'-biphenyl]-2-yl)-4-hydroxy-4-{(3R)-1-[4-(methylamino)butanoyl]piperidin-3-yl}butyl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C39 N38 90D sing 1 n n N38 C37 90D sing 2 n n C37 C36 90D sing 3 n n C36 C35 90D sing 4 n n C35 C33 90D sing 5 n n C01 C02 90D sing 6 n n C33 O34 90D doub 7 n n C33 N31 90D sing 8 n n C02 C03 90D sing 9 n n C30 N31 90D sing 10 n n C30 C29 90D sing 11 n n N31 C32 90D sing 12 n n C29 C28 90D sing 13 n n C03 C04 90D doub 14 n y C03 C08 90D sing 15 n y C32 C26 90D sing 16 n n C04 C05 90D sing 17 n y C08 C07 90D doub 18 n y C28 C26 90D sing 19 n n C26 C16 90D sing 20 n n C05 C06 90D doub 21 n y C07 C06 90D sing 22 n y C07 C09 90D sing 23 n n C16 C18 90D sing 24 n n C16 O17 90D sing 25 n n C16 C15 90D sing 26 n n C18 C19 90D sing 27 n n C09 C15 90D doub 28 n y C09 C10 90D sing 29 n y C15 C14 90D sing 30 n y F11 C10 90D sing 31 n n C10 C12 90D doub 32 n y C20 C19 90D sing 33 n n C20 N21 90D sing 34 n n C14 C13 90D doub 35 n y C12 C13 90D sing 36 n y N21 C22 90D sing 37 n n C22 O23 90D doub 38 n n C22 O24 90D sing 39 n n O24 C25 90D sing 40 n n C01 H1 90D sing 41 n n C01 H2 90D sing 42 n n C01 H3 90D sing 43 n n C02 H4 90D sing 44 n n C02 H5 90D sing 45 n n C04 H6 90D sing 46 n n C05 H7 90D sing 47 n n C06 H8 90D sing 48 n n C08 H9 90D sing 49 n n C12 H10 90D sing 50 n n C13 H11 90D sing 51 n n C14 H12 90D sing 52 n n O17 H13 90D sing 53 n n C18 H14 90D sing 54 n n C18 H15 90D sing 55 n n C19 H16 90D sing 56 n n C19 H17 90D sing 57 n n C20 H18 90D sing 58 n n C20 H19 90D sing 59 n n N21 H20 90D sing 60 n n C25 H21 90D sing 61 n n C25 H22 90D sing 62 n n C25 H23 90D sing 63 n n C26 H24 90D sing 64 n n C28 H25 90D sing 65 n n C28 H26 90D sing 66 n n C29 H27 90D sing 67 n n C29 H28 90D sing 68 n n C30 H29 90D sing 69 n n C30 H30 90D sing 70 n n C32 H31 90D sing 71 n n C32 H32 90D sing 72 n n C35 H33 90D sing 73 n n C35 H34 90D sing 74 n n C36 H35 90D sing 75 n n C36 H36 90D sing 76 n n C37 H37 90D sing 77 n n C37 H38 90D sing 78 n n N38 H39 90D sing 79 n n C39 H41 90D sing 80 n n C39 H42 90D sing 81 n n C39 H43 90D sing 82 n n # _atom_sites.entry_id 5V8V _atom_sites.fract_transf_matrix[1][1] 0.018394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 1 NAG NAG . D 3 90D A 1 502 3 90D 811 . E 3 90D A 1 503 4 90D 811 . F 2 NAG B 1 501 2 NAG NAG . G 3 90D B 1 502 1 90D 811 . H 3 90D B 1 503 2 90D 811 . I 4 HOH A 1 601 44 HOH HOH . I 4 HOH A 2 602 82 HOH HOH . I 4 HOH A 3 603 81 HOH HOH . I 4 HOH A 4 604 56 HOH HOH . I 4 HOH A 5 605 16 HOH HOH . I 4 HOH A 6 606 41 HOH HOH . I 4 HOH A 7 607 72 HOH HOH . I 4 HOH A 8 608 12 HOH HOH . I 4 HOH A 9 609 37 HOH HOH . I 4 HOH A 10 610 38 HOH HOH . I 4 HOH A 11 611 61 HOH HOH . I 4 HOH A 12 612 73 HOH HOH . I 4 HOH A 13 613 10 HOH HOH . I 4 HOH A 14 614 23 HOH HOH . I 4 HOH A 15 615 13 HOH HOH . I 4 HOH A 16 616 14 HOH HOH . I 4 HOH A 17 617 30 HOH HOH . I 4 HOH A 18 618 26 HOH HOH . I 4 HOH A 19 619 45 HOH HOH . I 4 HOH A 20 620 80 HOH HOH . I 4 HOH A 21 621 77 HOH HOH . I 4 HOH A 22 622 70 HOH HOH . I 4 HOH A 23 623 11 HOH HOH . I 4 HOH A 24 624 51 HOH HOH . I 4 HOH A 25 625 47 HOH HOH . I 4 HOH A 26 626 27 HOH HOH . I 4 HOH A 27 627 21 HOH HOH . I 4 HOH A 28 628 8 HOH HOH . I 4 HOH A 29 629 19 HOH HOH . I 4 HOH A 30 630 65 HOH HOH . I 4 HOH A 31 631 2 HOH HOH . I 4 HOH A 32 632 57 HOH HOH . I 4 HOH A 33 633 40 HOH HOH . I 4 HOH A 34 634 52 HOH HOH . I 4 HOH A 35 635 85 HOH HOH . I 4 HOH A 36 636 64 HOH HOH . I 4 HOH A 37 637 63 HOH HOH . I 4 HOH A 38 638 32 HOH HOH . I 4 HOH A 39 639 86 HOH HOH . I 4 HOH A 40 640 3 HOH HOH . I 4 HOH A 41 641 22 HOH HOH . I 4 HOH A 42 642 66 HOH HOH . I 4 HOH A 43 643 60 HOH HOH . I 4 HOH A 44 644 62 HOH HOH . I 4 HOH A 45 645 74 HOH HOH . J 4 HOH B 1 601 18 HOH HOH . J 4 HOH B 2 602 83 HOH HOH . J 4 HOH B 3 603 68 HOH HOH . J 4 HOH B 4 604 67 HOH HOH . J 4 HOH B 5 605 6 HOH HOH . J 4 HOH B 6 606 29 HOH HOH . J 4 HOH B 7 607 54 HOH HOH . J 4 HOH B 8 608 78 HOH HOH . J 4 HOH B 9 609 15 HOH HOH . J 4 HOH B 10 610 31 HOH HOH . J 4 HOH B 11 611 53 HOH HOH . J 4 HOH B 12 612 71 HOH HOH . J 4 HOH B 13 613 84 HOH HOH . J 4 HOH B 14 614 5 HOH HOH . J 4 HOH B 15 615 75 HOH HOH . J 4 HOH B 16 616 69 HOH HOH . J 4 HOH B 17 617 79 HOH HOH . J 4 HOH B 18 618 59 HOH HOH . J 4 HOH B 19 619 50 HOH HOH . J 4 HOH B 20 620 36 HOH HOH . J 4 HOH B 21 621 49 HOH HOH . J 4 HOH B 22 622 48 HOH HOH . J 4 HOH B 23 623 35 HOH HOH . J 4 HOH B 24 624 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 90D . . . D 3 27.224 38.576 24.43 1 45.25 ? C01 90D 502 A 1 HETATM 2 C C02 90D . . . D 3 27.655 37.16 24.148 1 47.89 ? C02 90D 502 A 1 HETATM 3 C C03 90D . . . D 3 27.769 36.815 22.66 1 57.15 ? C03 90D 502 A 1 HETATM 4 C C04 90D . . . D 3 28.93 36.255 22.144 1 56.63 ? C04 90D 502 A 1 HETATM 5 C C05 90D . . . D 3 29.026 35.939 20.8 1 51.52 ? C05 90D 502 A 1 HETATM 6 C C06 90D . . . D 3 27.96 36.174 19.952 1 52.04 ? C06 90D 502 A 1 HETATM 7 C C07 90D . . . D 3 26.779 36.734 20.438 1 56.98 ? C07 90D 502 A 1 HETATM 8 C C08 90D . . . D 3 26.703 37.039 21.797 1 55.87 ? C08 90D 502 A 1 HETATM 9 C C09 90D . . . D 3 25.624 37.006 19.524 1 56.6 ? C09 90D 502 A 1 HETATM 10 C C10 90D . . . D 3 24.839 35.937 19.11 1 55.9 ? C10 90D 502 A 1 HETATM 11 F F11 90D . . . D 3 25.157 34.707 19.574 1 64.31 ? F11 90D 502 A 1 HETATM 12 C C12 90D . . . D 3 23.766 36.059 18.271 1 44.03 ? C12 90D 502 A 1 HETATM 13 C C13 90D . . . D 3 23.446 37.318 17.797 1 36.54 ? C13 90D 502 A 1 HETATM 14 C C14 90D . . . D 3 24.196 38.424 18.17 1 38.41 ? C14 90D 502 A 1 HETATM 15 C C15 90D . . . D 3 25.291 38.296 19.025 1 51.16 ? C15 90D 502 A 1 HETATM 16 C C16 90D . . . D 3 26.101 39.557 19.419 1 46.79 ? C16 90D 502 A 1 HETATM 17 O O17 90D . . . D 3 25.583 40.674 18.691 1 41.35 ? O17 90D 502 A 1 HETATM 18 C C18 90D . . . D 3 27.605 39.445 19.108 1 36.34 ? C18 90D 502 A 1 HETATM 19 C C19 90D . . . D 3 28.042 39.994 17.77 1 41.67 ? C19 90D 502 A 1 HETATM 20 C C20 90D . . . D 3 28.484 38.929 16.787 1 48.78 ? C20 90D 502 A 1 HETATM 21 N N21 90D . . . D 3 29.936 38.951 16.55 1 47.58 ? N21 90D 502 A 1 HETATM 22 C C22 90D . . . D 3 30.458 39.379 15.388 1 42.35 ? C22 90D 502 A 1 HETATM 23 O O23 90D . . . D 3 30.58 40.544 15.077 1 40.77 ? O23 90D 502 A 1 HETATM 24 O O24 90D . . . D 3 30.83 38.347 14.616 1 41.4 ? O24 90D 502 A 1 HETATM 25 C C25 90D . . . D 3 31.469 38.701 13.362 1 29.46 ? C25 90D 502 A 1 HETATM 26 C C26 90D . . . D 3 25.69 40.03 20.888 1 51.79 ? C26 90D 502 A 1 HETATM 27 C C28 90D . . . D 3 24.192 40.085 21.233 1 34.72 ? C28 90D 502 A 1 HETATM 28 C C29 90D . . . D 3 23.964 40.54 22.676 1 30.47 ? C29 90D 502 A 1 HETATM 29 C C30 90D . . . D 3 24.7 41.836 22.954 1 39.14 ? C30 90D 502 A 1 HETATM 30 N N31 90D . . . D 3 26.125 41.723 22.567 1 53.9 ? N31 90D 502 A 1 HETATM 31 C C32 90D . . . D 3 26.309 41.34 21.168 1 55.65 ? C32 90D 502 A 1 HETATM 32 C C33 90D . . . D 3 27.172 41.929 23.396 1 55.53 ? C33 90D 502 A 1 HETATM 33 O O34 90D . . . D 3 28.329 41.815 23.018 1 53.74 ? O34 90D 502 A 1 HETATM 34 C C35 90D . . . D 3 26.867 42.314 24.828 1 46.52 ? C35 90D 502 A 1 HETATM 35 C C36 90D . . . D 3 28.128 42.483 25.663 1 48.77 ? C36 90D 502 A 1 HETATM 36 C C37 90D . . . D 3 27.942 43.43 26.834 1 51.3 ? C37 90D 502 A 1 HETATM 37 N N38 90D . . . D 3 28.126 42.762 28.124 1 53.56 ? N38 90D 502 A 1 HETATM 38 C C39 90D . . . D 3 28.104 43.733 29.22 1 61.42 ? C39 90D 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #