data_5V9L # _model_server_result.job_id 0ijb4uz8XksOb0eR9GPFdA _model_server_result.datetime_utc '2025-01-03 03:43:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 5V9L # _exptl.entry_id 5V9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V9L _cell.length_a 85.062 _cell.length_b 85.062 _cell.length_c 130.542 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 F C19 91D . A 91D 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale2 B SG CYS 13 B CYS 12 1_555 I C19 91D . B 91D 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale3 C SG CYS 13 C CYS 12 1_555 L C19 91D . C 91D 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 D O3B GDP . A GDP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc3 E MG MG . A MG 202 1_555 M O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc4 E MG MG . A MG 202 1_555 M O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc5 E MG MG . A MG 202 1_555 M O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc6 E MG MG . A MG 202 1_555 M O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 G O3B GDP . B GDP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc9 H MG MG . B MG 202 1_555 N O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc10 H MG MG . B MG 202 1_555 N O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 H MG MG . B MG 202 1_555 N O HOH . B HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc12 H MG MG . B MG 202 1_555 N O HOH . B HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc13 C OG SER 18 C SER 17 1_555 K MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc14 J O3B GDP . C GDP 201 1_555 K MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc15 K MG MG . C MG 202 1_555 O O HOH . C HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc16 K MG MG . C MG 202 1_555 O O HOH . C HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc17 K MG MG . C MG 202 1_555 O O HOH . C HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc18 K MG MG . C MG 202 1_555 O O HOH . C HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V9L _atom_sites.fract_transf_matrix[1][1] 0.011756 _atom_sites.fract_transf_matrix[1][2] 0.006787 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GDP A 1 201 169 GDP GDP . E 3 MG A 1 202 170 MG MG . F 4 91D A 1 203 171 91D LIG . G 2 GDP B 1 201 169 GDP GDP . H 3 MG B 1 202 170 MG MG . I 4 91D B 1 203 171 91D LIG . J 2 GDP C 1 201 169 GDP GDP . K 3 MG C 1 202 170 MG MG . L 4 91D C 1 203 171 91D LIG . M 5 HOH A 1 301 1 HOH HOH . M 5 HOH A 2 302 163 HOH HOH . M 5 HOH A 3 303 139 HOH HOH . M 5 HOH A 4 304 146 HOH HOH . M 5 HOH A 5 305 115 HOH HOH . M 5 HOH A 6 306 4 HOH HOH . M 5 HOH A 7 307 145 HOH HOH . M 5 HOH A 8 308 233 HOH HOH . M 5 HOH A 9 309 135 HOH HOH . M 5 HOH A 10 310 64 HOH HOH . M 5 HOH A 11 311 116 HOH HOH . M 5 HOH A 12 312 236 HOH HOH . M 5 HOH A 13 313 159 HOH HOH . M 5 HOH A 14 314 157 HOH HOH . M 5 HOH A 15 315 122 HOH HOH . M 5 HOH A 16 316 83 HOH HOH . M 5 HOH A 17 317 124 HOH HOH . M 5 HOH A 18 318 142 HOH HOH . M 5 HOH A 19 319 234 HOH HOH . M 5 HOH A 20 320 134 HOH HOH . M 5 HOH A 21 321 123 HOH HOH . M 5 HOH A 22 322 3 HOH HOH . M 5 HOH A 23 323 151 HOH HOH . M 5 HOH A 24 324 128 HOH HOH . M 5 HOH A 25 325 51 HOH HOH . M 5 HOH A 26 326 113 HOH HOH . M 5 HOH A 27 327 153 HOH HOH . M 5 HOH A 28 328 149 HOH HOH . M 5 HOH A 29 329 132 HOH HOH . M 5 HOH A 30 330 112 HOH HOH . M 5 HOH A 31 331 221 HOH HOH . M 5 HOH A 32 332 227 HOH HOH . M 5 HOH A 33 333 138 HOH HOH . M 5 HOH A 34 334 117 HOH HOH . M 5 HOH A 35 335 133 HOH HOH . M 5 HOH A 36 336 2 HOH HOH . M 5 HOH A 37 337 225 HOH HOH . M 5 HOH A 38 338 160 HOH HOH . M 5 HOH A 39 339 114 HOH HOH . M 5 HOH A 40 340 164 HOH HOH . M 5 HOH A 41 341 120 HOH HOH . M 5 HOH A 42 342 140 HOH HOH . M 5 HOH A 43 343 226 HOH HOH . M 5 HOH A 44 344 31 HOH HOH . M 5 HOH A 45 345 131 HOH HOH . M 5 HOH A 46 346 109 HOH HOH . M 5 HOH A 47 347 239 HOH HOH . M 5 HOH A 48 348 129 HOH HOH . M 5 HOH A 49 349 224 HOH HOH . M 5 HOH A 50 350 119 HOH HOH . M 5 HOH A 51 351 166 HOH HOH . M 5 HOH A 52 352 150 HOH HOH . M 5 HOH A 53 353 223 HOH HOH . M 5 HOH A 54 354 173 HOH HOH . M 5 HOH A 55 355 154 HOH HOH . M 5 HOH A 56 356 127 HOH HOH . M 5 HOH A 57 357 147 HOH HOH . M 5 HOH A 58 358 125 HOH HOH . M 5 HOH A 59 359 118 HOH HOH . M 5 HOH A 60 360 136 HOH HOH . M 5 HOH A 61 361 126 HOH HOH . M 5 HOH A 62 362 148 HOH HOH . M 5 HOH A 63 363 162 HOH HOH . M 5 HOH A 64 364 218 HOH HOH . M 5 HOH A 65 365 141 HOH HOH . M 5 HOH A 66 366 167 HOH HOH . M 5 HOH A 67 367 137 HOH HOH . M 5 HOH A 68 368 237 HOH HOH . M 5 HOH A 69 369 161 HOH HOH . M 5 HOH A 70 370 222 HOH HOH . M 5 HOH A 71 371 155 HOH HOH . M 5 HOH A 72 372 121 HOH HOH . M 5 HOH A 73 373 165 HOH HOH . M 5 HOH A 74 374 209 HOH HOH . N 5 HOH B 1 301 192 HOH HOH . N 5 HOH B 2 302 43 HOH HOH . N 5 HOH B 3 303 238 HOH HOH . N 5 HOH B 4 304 190 HOH HOH . N 5 HOH B 5 305 178 HOH HOH . N 5 HOH B 6 306 63 HOH HOH . N 5 HOH B 7 307 88 HOH HOH . N 5 HOH B 8 308 22 HOH HOH . N 5 HOH B 9 309 72 HOH HOH . N 5 HOH B 10 310 76 HOH HOH . N 5 HOH B 11 311 144 HOH HOH . N 5 HOH B 12 312 7 HOH HOH . N 5 HOH B 13 313 187 HOH HOH . N 5 HOH B 14 314 20 HOH HOH . N 5 HOH B 15 315 26 HOH HOH . N 5 HOH B 16 316 58 HOH HOH . N 5 HOH B 17 317 143 HOH HOH . N 5 HOH B 18 318 60 HOH HOH . N 5 HOH B 19 319 100 HOH HOH . N 5 HOH B 20 320 95 HOH HOH . N 5 HOH B 21 321 6 HOH HOH . N 5 HOH B 22 322 53 HOH HOH . N 5 HOH B 23 323 152 HOH HOH . N 5 HOH B 24 324 89 HOH HOH . N 5 HOH B 25 325 28 HOH HOH . N 5 HOH B 26 326 57 HOH HOH . N 5 HOH B 27 327 52 HOH HOH . N 5 HOH B 28 328 54 HOH HOH . N 5 HOH B 29 329 93 HOH HOH . N 5 HOH B 30 330 170 HOH HOH . N 5 HOH B 31 331 5 HOH HOH . N 5 HOH B 32 332 47 HOH HOH . N 5 HOH B 33 333 66 HOH HOH . N 5 HOH B 34 334 230 HOH HOH . N 5 HOH B 35 335 98 HOH HOH . N 5 HOH B 36 336 56 HOH HOH . N 5 HOH B 37 337 33 HOH HOH . N 5 HOH B 38 338 97 HOH HOH . N 5 HOH B 39 339 176 HOH HOH . N 5 HOH B 40 340 18 HOH HOH . N 5 HOH B 41 341 14 HOH HOH . N 5 HOH B 42 342 8 HOH HOH . N 5 HOH B 43 343 65 HOH HOH . N 5 HOH B 44 344 21 HOH HOH . N 5 HOH B 45 345 87 HOH HOH . N 5 HOH B 46 346 68 HOH HOH . N 5 HOH B 47 347 177 HOH HOH . N 5 HOH B 48 348 188 HOH HOH . N 5 HOH B 49 349 228 HOH HOH . N 5 HOH B 50 350 235 HOH HOH . N 5 HOH B 51 351 73 HOH HOH . N 5 HOH B 52 352 84 HOH HOH . N 5 HOH B 53 353 92 HOH HOH . N 5 HOH B 54 354 27 HOH HOH . N 5 HOH B 55 355 217 HOH HOH . N 5 HOH B 56 356 171 HOH HOH . N 5 HOH B 57 357 41 HOH HOH . N 5 HOH B 58 358 231 HOH HOH . N 5 HOH B 59 359 94 HOH HOH . N 5 HOH B 60 360 103 HOH HOH . N 5 HOH B 61 361 74 HOH HOH . N 5 HOH B 62 362 69 HOH HOH . N 5 HOH B 63 363 172 HOH HOH . N 5 HOH B 64 364 24 HOH HOH . N 5 HOH B 65 365 44 HOH HOH . N 5 HOH B 66 366 29 HOH HOH . N 5 HOH B 67 367 185 HOH HOH . N 5 HOH B 68 368 23 HOH HOH . N 5 HOH B 69 369 79 HOH HOH . N 5 HOH B 70 370 91 HOH HOH . N 5 HOH B 71 371 215 HOH HOH . N 5 HOH B 72 372 71 HOH HOH . N 5 HOH B 73 373 81 HOH HOH . N 5 HOH B 74 374 183 HOH HOH . N 5 HOH B 75 375 38 HOH HOH . N 5 HOH B 76 376 156 HOH HOH . N 5 HOH B 77 377 232 HOH HOH . N 5 HOH B 78 378 45 HOH HOH . N 5 HOH B 79 379 180 HOH HOH . N 5 HOH B 80 380 34 HOH HOH . N 5 HOH B 81 381 229 HOH HOH . N 5 HOH B 82 382 82 HOH HOH . N 5 HOH B 83 383 67 HOH HOH . N 5 HOH B 84 384 101 HOH HOH . N 5 HOH B 85 385 102 HOH HOH . N 5 HOH B 86 386 158 HOH HOH . N 5 HOH B 87 387 182 HOH HOH . N 5 HOH B 88 388 214 HOH HOH . N 5 HOH B 89 389 184 HOH HOH . N 5 HOH B 90 390 219 HOH HOH . N 5 HOH B 91 391 241 HOH HOH . N 5 HOH B 92 392 240 HOH HOH . N 5 HOH B 93 393 110 HOH HOH . N 5 HOH B 94 394 181 HOH HOH . N 5 HOH B 95 395 186 HOH HOH . N 5 HOH B 96 396 191 HOH HOH . N 5 HOH B 97 397 169 HOH HOH . N 5 HOH B 98 398 35 HOH HOH . N 5 HOH B 99 399 168 HOH HOH . O 5 HOH C 1 301 179 HOH HOH . O 5 HOH C 2 302 196 HOH HOH . O 5 HOH C 3 303 85 HOH HOH . O 5 HOH C 4 304 96 HOH HOH . O 5 HOH C 5 305 174 HOH HOH . O 5 HOH C 6 306 46 HOH HOH . O 5 HOH C 7 307 203 HOH HOH . O 5 HOH C 8 308 90 HOH HOH . O 5 HOH C 9 309 75 HOH HOH . O 5 HOH C 10 310 208 HOH HOH . O 5 HOH C 11 311 197 HOH HOH . O 5 HOH C 12 312 13 HOH HOH . O 5 HOH C 13 313 42 HOH HOH . O 5 HOH C 14 314 205 HOH HOH . O 5 HOH C 15 315 19 HOH HOH . O 5 HOH C 16 316 105 HOH HOH . O 5 HOH C 17 317 12 HOH HOH . O 5 HOH C 18 318 189 HOH HOH . O 5 HOH C 19 319 39 HOH HOH . O 5 HOH C 20 320 62 HOH HOH . O 5 HOH C 21 321 17 HOH HOH . O 5 HOH C 22 322 10 HOH HOH . O 5 HOH C 23 323 11 HOH HOH . O 5 HOH C 24 324 80 HOH HOH . O 5 HOH C 25 325 199 HOH HOH . O 5 HOH C 26 326 86 HOH HOH . O 5 HOH C 27 327 30 HOH HOH . O 5 HOH C 28 328 25 HOH HOH . O 5 HOH C 29 329 15 HOH HOH . O 5 HOH C 30 330 111 HOH HOH . O 5 HOH C 31 331 216 HOH HOH . O 5 HOH C 32 332 70 HOH HOH . O 5 HOH C 33 333 210 HOH HOH . O 5 HOH C 34 334 202 HOH HOH . O 5 HOH C 35 335 204 HOH HOH . O 5 HOH C 36 336 16 HOH HOH . O 5 HOH C 37 337 61 HOH HOH . O 5 HOH C 38 338 9 HOH HOH . O 5 HOH C 39 339 78 HOH HOH . O 5 HOH C 40 340 32 HOH HOH . O 5 HOH C 41 341 40 HOH HOH . O 5 HOH C 42 342 59 HOH HOH . O 5 HOH C 43 343 36 HOH HOH . O 5 HOH C 44 344 212 HOH HOH . O 5 HOH C 45 345 104 HOH HOH . O 5 HOH C 46 346 37 HOH HOH . O 5 HOH C 47 347 50 HOH HOH . O 5 HOH C 48 348 206 HOH HOH . O 5 HOH C 49 349 107 HOH HOH . O 5 HOH C 50 350 99 HOH HOH . O 5 HOH C 51 351 220 HOH HOH . O 5 HOH C 52 352 195 HOH HOH . O 5 HOH C 53 353 213 HOH HOH . O 5 HOH C 54 354 194 HOH HOH . O 5 HOH C 55 355 130 HOH HOH . O 5 HOH C 56 356 211 HOH HOH . O 5 HOH C 57 357 207 HOH HOH . O 5 HOH C 58 358 200 HOH HOH . O 5 HOH C 59 359 49 HOH HOH . O 5 HOH C 60 360 48 HOH HOH . O 5 HOH C 61 361 77 HOH HOH . O 5 HOH C 62 362 106 HOH HOH . O 5 HOH C 63 363 193 HOH HOH . O 5 HOH C 64 364 201 HOH HOH . O 5 HOH C 65 365 108 HOH HOH . O 5 HOH C 66 366 198 HOH HOH . O 5 HOH C 67 367 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.037 _atom_site.Cartn_y 117.257 _atom_site.Cartn_z -24.069 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #