data_5V9T # _model_server_result.job_id 1LYAPlh6cbte3kZ53HCZIg _model_server_result.datetime_utc '2024-11-24 05:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":904}' # _entry.id 5V9T # _exptl.entry_id 5V9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.361 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(3R)-1-[3-(propan-2-yl)-1H-pyrazole-5-carbonyl]pyrrolidin-3-yl}cyclopropanecarboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V9T _cell.length_a 159.615 _cell.length_b 159.615 _cell.length_c 92.071 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,L 1 1 B,C,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 669 A CYS 679 1_555 A SG CYS 689 A CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? disulf ? disulf2 B SG CYS 669 B CYS 679 1_555 B SG CYS 689 B CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc1 A NE2 HIS 473 A HIS 483 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc2 A OE2 GLU 475 A GLU 485 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 A NE2 HIS 561 A HIS 571 1_555 D NI NI . A NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A SG CYS 666 A CYS 676 1_555 E ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc5 A SG CYS 669 A CYS 679 1_555 E ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 A SG CYS 680 A CYS 690 1_555 F ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 A N CYS 682 A CYS 692 1_555 F ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 A SG CYS 682 A CYS 692 1_555 F ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc9 A SG CYS 689 A CYS 699 1_555 E ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc10 A SG CYS 699 A CYS 709 1_555 F ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 D NI NI . A NI 901 1_555 G O11 90V . A 90V 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc12 D NI NI . A NI 901 1_555 G N7 90V . A 90V 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc13 B NE2 HIS 473 B HIS 483 1_555 H NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc14 B OE2 GLU 475 B GLU 485 1_555 H NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc15 B NE2 HIS 561 B HIS 571 1_555 H NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc16 B SG CYS 666 B CYS 676 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc17 B SG CYS 669 B CYS 679 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc18 B SG CYS 680 B CYS 690 1_555 J ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc19 B SG CYS 682 B CYS 692 1_555 J ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc20 B SG CYS 689 B CYS 699 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc21 B SG CYS 699 B CYS 709 1_555 J ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc22 H NI NI . B NI 901 1_555 K N7 90V . B 90V 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc23 H NI NI . B NI 901 1_555 K O11 90V . B 90V 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C15 H22 N4 O2' _chem_comp.formula_weight 290.361 _chem_comp.id 90V _chem_comp.mon_nstd_flag . _chem_comp.name N-{(3R)-1-[3-(propan-2-yl)-1H-pyrazole-5-carbonyl]pyrrolidin-3-yl}cyclopropanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 90V sing 1 n n C22 C21 90V sing 2 n n C23 C21 90V sing 3 n n C21 C19 90V sing 4 n n O20 C19 90V doub 5 n n C19 N18 90V sing 6 n n N18 C15 90V sing 7 n n C15 C14 90V sing 8 n n C15 C17 90V sing 9 n n C14 C13 90V sing 10 n n C17 N12 90V sing 11 n n C13 N12 90V sing 12 n n N12 C10 90V sing 13 n n O11 C10 90V doub 14 n n C10 C6 90V sing 15 n n C5 C6 90V doub 16 n y C5 C4 90V sing 17 n y C6 N7 90V sing 18 n y C4 C2 90V sing 19 n n C4 N9 90V doub 20 n y N7 N9 90V sing 21 n y C2 C3 90V sing 22 n n C2 C1 90V sing 23 n n C14 H142 90V sing 24 n n C14 H141 90V sing 25 n n C5 H51 90V sing 26 n n C13 H132 90V sing 27 n n C13 H131 90V sing 28 n n C3 H32 90V sing 29 n n C3 H31 90V sing 30 n n C3 H33 90V sing 31 n n C1 H13 90V sing 32 n n C1 H12 90V sing 33 n n C1 H11 90V sing 34 n n C15 H16 90V sing 35 n n C17 H172 90V sing 36 n n C17 H171 90V sing 37 n n C2 H21 90V sing 38 n n C21 H211 90V sing 39 n n C22 H222 90V sing 40 n n C22 H221 90V sing 41 n n C23 H232 90V sing 42 n n C23 H231 90V sing 43 n n N18 H181 90V sing 44 n n N7 H8 90V sing 45 n n # _atom_sites.entry_id 5V9T _atom_sites.fract_transf_matrix[1][1] 0.006265 _atom_sites.fract_transf_matrix[1][2] 0.003617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NI A 1 901 1500 NI NI . E 4 ZN A 1 902 1502 ZN ZN . F 4 ZN A 1 903 1501 ZN ZN . G 5 90V A 1 904 2 90V DRG . H 3 NI B 1 901 1500 NI NI . I 4 ZN B 1 902 1502 ZN ZN . J 4 ZN B 1 903 1501 ZN ZN . K 5 90V B 1 904 1 90V DRG . L 6 HOH A 1 1001 10 HOH HOH . L 6 HOH A 2 1002 8 HOH HOH . L 6 HOH A 3 1003 11 HOH HOH . L 6 HOH A 4 1004 6 HOH HOH . L 6 HOH A 5 1005 9 HOH HOH . L 6 HOH A 6 1006 4 HOH HOH . L 6 HOH A 7 1007 7 HOH HOH . L 6 HOH A 8 1008 2 HOH HOH . L 6 HOH A 9 1009 3 HOH HOH . M 6 HOH B 1 1001 5 HOH HOH . M 6 HOH B 2 1002 14 HOH HOH . M 6 HOH B 3 1003 12 HOH HOH . M 6 HOH B 4 1004 13 HOH HOH . M 6 HOH B 5 1005 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 90V . . . K 5 -15.833 66.412 15.206 1 59.05 ? C4 90V 904 B 1 HETATM 2 C C14 90V . . . K 5 -12.751 63.64 11.052 1 59.05 ? C14 90V 904 B 1 HETATM 3 C C5 90V . . . K 5 -15.146 66.204 14.017 1 59.05 ? C5 90V 904 B 1 HETATM 4 C C6 90V . . . K 5 -13.944 66.905 14.14 1 60.51 ? C6 90V 904 B 1 HETATM 5 C C10 90V . . . K 5 -12.804 66.984 13.104 1 81.99 ? C10 90V 904 B 1 HETATM 6 C C13 90V . . . K 5 -13.553 64.631 12.004 1 59.05 ? C13 90V 904 B 1 HETATM 7 C C3 90V . . . K 5 -18.208 67.015 15.725 1 87.53 ? C3 90V 904 B 1 HETATM 8 C C1 90V . . . K 5 -17.104 65.044 16.896 1 59.05 ? C1 90V 904 B 1 HETATM 9 C C15 90V . . . K 5 -12.047 64.43 10.288 1 59.05 ? C15 90V 904 B 1 HETATM 10 C C17 90V . . . K 5 -11.7 65.808 11.195 1 89.54 ? C17 90V 904 B 1 HETATM 11 C C19 90V . . . K 5 -12.477 64.266 7.824 1 59.05 ? C19 90V 904 B 1 HETATM 12 C C2 90V . . . K 5 -17.212 65.85 15.581 1 59.05 ? C2 90V 904 B 1 HETATM 13 C C21 90V . . . K 5 -13.191 64.686 6.541 1 59.05 ? C21 90V 904 B 1 HETATM 14 C C22 90V . . . K 5 -13.08 63.697 5.376 1 59.05 ? C22 90V 904 B 1 HETATM 15 C C23 90V . . . K 5 -14.389 63.817 6.162 1 59.05 ? C23 90V 904 B 1 HETATM 16 N N12 90V . . . K 5 -12.638 65.907 12.132 1 59.05 ? N12 90V 904 B 1 HETATM 17 N N18 90V . . . K 5 -12.801 64.87 9.109 1 59.05 ? N18 90V 904 B 1 HETATM 18 N N7 90V . . . K 5 -13.915 67.481 15.339 1 59.05 ? N7 90V 904 B 1 HETATM 19 N N9 90V . . . K 5 -15.086 67.183 15.988 1 84.51 ? N9 90V 904 B 1 HETATM 20 O O11 90V . . . K 5 -12.041 67.883 13.102 1 117.19 ? O11 90V 904 B 1 HETATM 21 O O20 90V . . . K 5 -11.653 63.424 7.765 1 91.48 ? O20 90V 904 B 1 HETATM 22 H H142 90V . . . K 5 -12.169 63.067 11.575 1 70.7 ? H142 90V 904 B 1 HETATM 23 H H141 90V . . . K 5 -13.366 63.112 10.519 1 70.7 ? H141 90V 904 B 1 HETATM 24 H H51 90V . . . K 5 -15.427 65.698 13.29 1 70.7 ? H51 90V 904 B 1 HETATM 25 H H132 90V . . . K 5 -13.687 64.226 12.875 1 70.7 ? H132 90V 904 B 1 HETATM 26 H H131 90V . . . K 5 -14.404 64.868 11.602 1 70.7 ? H131 90V 904 B 1 HETATM 27 H H32 90V . . . K 5 -18.318 67.438 14.894 1 104.88 ? H32 90V 904 B 1 HETATM 28 H H31 90V . . . K 5 -17.878 67.633 16.35 1 104.88 ? H31 90V 904 B 1 HETATM 29 H H33 90V . . . K 5 -19.036 66.684 16.019 1 104.88 ? H33 90V 904 B 1 HETATM 30 H H13 90V . . . K 5 -16.584 64.276 16.751 1 70.7 ? H13 90V 904 B 1 HETATM 31 H H12 90V . . . K 5 -17.963 64.791 17.18 1 70.7 ? H12 90V 904 B 1 HETATM 32 H H11 90V . . . K 5 -16.701 65.575 17.557 1 70.7 ? H11 90V 904 B 1 HETATM 33 H H16 90V . . . K 5 -11.251 64.005 10.03 1 70.7 ? H16 90V 904 B 1 HETATM 34 H H172 90V . . . K 5 -11.721 66.592 10.624 1 107.29 ? H172 90V 904 B 1 HETATM 35 H H171 90V . . . K 5 -10.828 65.718 11.61 1 107.29 ? H171 90V 904 B 1 HETATM 36 H H21 90V . . . K 5 -17.506 65.28 14.895 1 70.7 ? H21 90V 904 B 1 HETATM 37 H H211 90V . . . K 5 -13.254 65.622 6.295 1 70.7 ? H211 90V 904 B 1 HETATM 38 H H222 90V . . . K 5 -13.086 64.091 4.49 1 70.7 ? H222 90V 904 B 1 HETATM 39 H H221 90V . . . K 5 -12.557 62.898 5.553 1 70.7 ? H221 90V 904 B 1 HETATM 40 H H232 90V . . . K 5 -14.583 63.084 6.767 1 70.7 ? H232 90V 904 B 1 HETATM 41 H H231 90V . . . K 5 -15.111 64.276 5.705 1 70.7 ? H231 90V 904 B 1 HETATM 42 H H181 90V . . . K 5 -13.392 65.492 9.169 1 70.7 ? H181 90V 904 B 1 HETATM 43 H H8 90V . . . K 5 -13.273 67.975 15.651 1 70.7 ? H8 90V 904 B 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #