data_5VAD # _model_server_result.job_id dqVC58S7w8AqEzRGfThEYA _model_server_result.datetime_utc '2024-11-23 22:57:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1602}' # _entry.id 5VAD # _exptl.entry_id 5VAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 115.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.18 _cell.angle_gamma 90 _cell.entry_id 5VAD _cell.length_a 71.089 _cell.length_b 92.278 _cell.length_c 84.832 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 457 A CYS 1453 1_555 A SG CYS 501 A CYS 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A SG CYS 452 A CYS 1448 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 A SG CYS 457 A CYS 1453 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc3 A SG CYS 499 A CYS 1495 1_555 E ZN ZN . A ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc4 B SG CYS 452 B CYS 1448 1_555 H ZN ZN . B ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 B SG CYS 499 B CYS 1495 1_555 H ZN ZN . B ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id PRO _chem_comp.mon_nstd_flag y _chem_comp.name PROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PRO sing 314 n n N CD PRO sing 315 n n N H PRO sing 316 n n CA C PRO sing 317 n n CA CB PRO sing 318 n n CA HA PRO sing 319 n n C O PRO doub 320 n n C OXT PRO sing 321 n n CB CG PRO sing 322 n n CB HB2 PRO sing 323 n n CB HB3 PRO sing 324 n n CG CD PRO sing 325 n n CG HG2 PRO sing 326 n n CG HG3 PRO sing 327 n n CD HD2 PRO sing 328 n n CD HD3 PRO sing 329 n n OXT HXT PRO sing 330 n n # _atom_sites.entry_id 5VAD _atom_sites.fract_transf_matrix[1][1] 0.014067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005451 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 91Y A 1 1601 1601 91Y LIG . D 3 PRO A 1 1602 1602 PRO PRO . E 4 ZN A 1 1603 1604 ZN ZN . F 2 91Y B 1 1601 1601 91Y LIG . G 3 PRO B 1 1602 1602 PRO PRO . H 4 ZN B 1 1603 1604 ZN ZN . I 5 HOH A 1 1701 44 HOH HOH . I 5 HOH A 2 1702 115 HOH HOH . I 5 HOH A 3 1703 64 HOH HOH . I 5 HOH A 4 1704 131 HOH HOH . I 5 HOH A 5 1705 132 HOH HOH . I 5 HOH A 6 1706 91 HOH HOH . I 5 HOH A 7 1707 110 HOH HOH . I 5 HOH A 8 1708 5 HOH HOH . I 5 HOH A 9 1709 106 HOH HOH . I 5 HOH A 10 1710 62 HOH HOH . I 5 HOH A 11 1711 53 HOH HOH . I 5 HOH A 12 1712 114 HOH HOH . I 5 HOH A 13 1713 33 HOH HOH . I 5 HOH A 14 1714 63 HOH HOH . I 5 HOH A 15 1715 2 HOH HOH . I 5 HOH A 16 1716 56 HOH HOH . I 5 HOH A 17 1717 12 HOH HOH . I 5 HOH A 18 1718 65 HOH HOH . I 5 HOH A 19 1719 54 HOH HOH . I 5 HOH A 20 1720 25 HOH HOH . I 5 HOH A 21 1721 13 HOH HOH . I 5 HOH A 22 1722 58 HOH HOH . I 5 HOH A 23 1723 55 HOH HOH . I 5 HOH A 24 1724 122 HOH HOH . I 5 HOH A 25 1725 138 HOH HOH . I 5 HOH A 26 1726 1 HOH HOH . I 5 HOH A 27 1727 51 HOH HOH . I 5 HOH A 28 1728 108 HOH HOH . I 5 HOH A 29 1729 127 HOH HOH . I 5 HOH A 30 1730 24 HOH HOH . I 5 HOH A 31 1731 14 HOH HOH . I 5 HOH A 32 1732 137 HOH HOH . I 5 HOH A 33 1733 43 HOH HOH . I 5 HOH A 34 1734 41 HOH HOH . I 5 HOH A 35 1735 120 HOH HOH . I 5 HOH A 36 1736 112 HOH HOH . I 5 HOH A 37 1737 140 HOH HOH . I 5 HOH A 38 1738 47 HOH HOH . I 5 HOH A 39 1739 3 HOH HOH . I 5 HOH A 40 1740 21 HOH HOH . I 5 HOH A 41 1741 72 HOH HOH . I 5 HOH A 42 1742 141 HOH HOH . I 5 HOH A 43 1743 136 HOH HOH . I 5 HOH A 44 1744 45 HOH HOH . I 5 HOH A 45 1745 34 HOH HOH . I 5 HOH A 46 1746 125 HOH HOH . I 5 HOH A 47 1747 66 HOH HOH . I 5 HOH A 48 1748 128 HOH HOH . I 5 HOH A 49 1749 59 HOH HOH . I 5 HOH A 50 1750 60 HOH HOH . I 5 HOH A 51 1751 19 HOH HOH . I 5 HOH A 52 1752 28 HOH HOH . I 5 HOH A 53 1753 4 HOH HOH . I 5 HOH A 54 1754 18 HOH HOH . I 5 HOH A 55 1755 70 HOH HOH . I 5 HOH A 56 1756 113 HOH HOH . I 5 HOH A 57 1757 119 HOH HOH . I 5 HOH A 58 1758 134 HOH HOH . I 5 HOH A 59 1759 121 HOH HOH . I 5 HOH A 60 1760 22 HOH HOH . I 5 HOH A 61 1761 116 HOH HOH . I 5 HOH A 62 1762 67 HOH HOH . I 5 HOH A 63 1763 107 HOH HOH . I 5 HOH A 64 1764 118 HOH HOH . I 5 HOH A 65 1765 139 HOH HOH . I 5 HOH A 66 1766 71 HOH HOH . I 5 HOH A 67 1767 48 HOH HOH . I 5 HOH A 68 1768 126 HOH HOH . I 5 HOH A 69 1769 49 HOH HOH . I 5 HOH A 70 1770 129 HOH HOH . I 5 HOH A 71 1771 68 HOH HOH . I 5 HOH A 72 1772 26 HOH HOH . I 5 HOH A 73 1773 69 HOH HOH . J 5 HOH B 1 1701 39 HOH HOH . J 5 HOH B 2 1702 27 HOH HOH . J 5 HOH B 3 1703 42 HOH HOH . J 5 HOH B 4 1704 117 HOH HOH . J 5 HOH B 5 1705 142 HOH HOH . J 5 HOH B 6 1706 97 HOH HOH . J 5 HOH B 7 1707 124 HOH HOH . J 5 HOH B 8 1708 79 HOH HOH . J 5 HOH B 9 1709 90 HOH HOH . J 5 HOH B 10 1710 9 HOH HOH . J 5 HOH B 11 1711 46 HOH HOH . J 5 HOH B 12 1712 35 HOH HOH . J 5 HOH B 13 1713 133 HOH HOH . J 5 HOH B 14 1714 52 HOH HOH . J 5 HOH B 15 1715 29 HOH HOH . J 5 HOH B 16 1716 32 HOH HOH . J 5 HOH B 17 1717 61 HOH HOH . J 5 HOH B 18 1718 105 HOH HOH . J 5 HOH B 19 1719 78 HOH HOH . J 5 HOH B 20 1720 81 HOH HOH . J 5 HOH B 21 1721 92 HOH HOH . J 5 HOH B 22 1722 103 HOH HOH . J 5 HOH B 23 1723 38 HOH HOH . J 5 HOH B 24 1724 101 HOH HOH . J 5 HOH B 25 1725 57 HOH HOH . J 5 HOH B 26 1726 15 HOH HOH . J 5 HOH B 27 1727 80 HOH HOH . J 5 HOH B 28 1728 36 HOH HOH . J 5 HOH B 29 1729 23 HOH HOH . J 5 HOH B 30 1730 17 HOH HOH . J 5 HOH B 31 1731 37 HOH HOH . J 5 HOH B 32 1732 99 HOH HOH . J 5 HOH B 33 1733 76 HOH HOH . J 5 HOH B 34 1734 86 HOH HOH . J 5 HOH B 35 1735 84 HOH HOH . J 5 HOH B 36 1736 50 HOH HOH . J 5 HOH B 37 1737 11 HOH HOH . J 5 HOH B 38 1738 89 HOH HOH . J 5 HOH B 39 1739 130 HOH HOH . J 5 HOH B 40 1740 31 HOH HOH . J 5 HOH B 41 1741 111 HOH HOH . J 5 HOH B 42 1742 30 HOH HOH . J 5 HOH B 43 1743 73 HOH HOH . J 5 HOH B 44 1744 16 HOH HOH . J 5 HOH B 45 1745 6 HOH HOH . J 5 HOH B 46 1746 104 HOH HOH . J 5 HOH B 47 1747 93 HOH HOH . J 5 HOH B 48 1748 100 HOH HOH . J 5 HOH B 49 1749 8 HOH HOH . J 5 HOH B 50 1750 109 HOH HOH . J 5 HOH B 51 1751 98 HOH HOH . J 5 HOH B 52 1752 20 HOH HOH . J 5 HOH B 53 1753 7 HOH HOH . J 5 HOH B 54 1754 135 HOH HOH . J 5 HOH B 55 1755 87 HOH HOH . J 5 HOH B 56 1756 40 HOH HOH . J 5 HOH B 57 1757 85 HOH HOH . J 5 HOH B 58 1758 74 HOH HOH . J 5 HOH B 59 1759 94 HOH HOH . J 5 HOH B 60 1760 75 HOH HOH . J 5 HOH B 61 1761 95 HOH HOH . J 5 HOH B 62 1762 123 HOH HOH . J 5 HOH B 63 1763 10 HOH HOH . J 5 HOH B 64 1764 102 HOH HOH . J 5 HOH B 65 1765 82 HOH HOH . J 5 HOH B 66 1766 88 HOH HOH . J 5 HOH B 67 1767 77 HOH HOH . J 5 HOH B 68 1768 96 HOH HOH . J 5 HOH B 69 1769 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PRO . . . G 3 -12.899 19.294 18.547 1 48.11 ? N PRO 1602 B 1 HETATM 2 C CA PRO . . . G 3 -12.254 19.851 17.354 1 48.66 ? CA PRO 1602 B 1 HETATM 3 C C PRO . . . G 3 -12.938 21.129 16.878 1 53.68 ? C PRO 1602 B 1 HETATM 4 O O PRO . . . G 3 -12.653 21.588 15.772 1 56.79 ? O PRO 1602 B 1 HETATM 5 C CB PRO . . . G 3 -12.405 18.737 16.311 1 42.13 ? CB PRO 1602 B 1 HETATM 6 C CG PRO . . . G 3 -13.542 17.913 16.801 1 45.7 ? CG PRO 1602 B 1 HETATM 7 C CD PRO . . . G 3 -13.476 17.966 18.295 1 45.87 ? CD PRO 1602 B 1 HETATM 8 O OXT PRO . . . G 3 -13.766 21.731 17.59 1 51.85 ? OXT PRO 1602 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #