data_5VAR # _model_server_result.job_id WLLOBt-a_LT6px_paV3oBA _model_server_result.datetime_utc '2024-12-27 01:36:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5var # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5VAR # _exptl.entry_id 5VAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,3R,4S)-3-[(dimethylamino)methyl]-1-phenylbicyclo[2.2.1]heptan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.61 _cell.angle_gamma 90 _cell.entry_id 5VAR _cell.length_a 33.27 _cell.length_b 39.84 _cell.length_c 44.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H23 N O' _chem_comp.formula_weight 245.36 _chem_comp.id 92Y _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,3R,4S)-3-[(dimethylamino)methyl]-1-phenylbicyclo[2.2.1]heptan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 92Y sing 1 n n C13 C12 92Y sing 2 n n C14 C9 92Y sing 3 n n C7 C6 92Y doub 4 n y C7 C8 92Y sing 5 n y C12 C15 92Y sing 6 n n C12 C11 92Y sing 7 n n C16 C11 92Y sing 8 n n C16 N2 92Y sing 9 n n C9 C15 92Y sing 10 n n C9 C8 92Y sing 11 n n C9 C10 92Y sing 12 n n C6 C5 92Y sing 13 n y O1 C10 92Y sing 14 n n C18 N2 92Y sing 15 n n C8 C3 92Y doub 16 n y C11 C10 92Y sing 17 n n N2 C17 92Y sing 18 n n C5 C4 92Y doub 19 n y C3 C4 92Y sing 20 n y C4 H1 92Y sing 21 n n C5 H2 92Y sing 22 n n C6 H3 92Y sing 23 n n C7 H4 92Y sing 24 n n C10 H5 92Y sing 25 n n C13 H6 92Y sing 26 n n C13 H7 92Y sing 27 n n C15 H8 92Y sing 28 n n C15 H9 92Y sing 29 n n C17 H10 92Y sing 30 n n C17 H11 92Y sing 31 n n C17 H12 92Y sing 32 n n O1 H13 92Y sing 33 n n C3 H15 92Y sing 34 n n C11 H16 92Y sing 35 n n C12 H17 92Y sing 36 n n C14 H18 92Y sing 37 n n C14 H19 92Y sing 38 n n C16 H20 92Y sing 39 n n C16 H21 92Y sing 40 n n C18 H22 92Y sing 41 n n C18 H23 92Y sing 42 n n C18 H24 92Y sing 43 n n # _atom_sites.entry_id 5VAR _atom_sites.fract_transf_matrix[1][1] 0.030057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006175 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 92Y A 1 1101 1 92Y LIG . C 3 HOH A 1 1201 1 HOH HOH . C 3 HOH A 2 1202 5 HOH HOH . C 3 HOH A 3 1203 12 HOH HOH . C 3 HOH A 4 1204 38 HOH HOH . C 3 HOH A 5 1205 1 HOH HOH . C 3 HOH A 6 1206 13 HOH HOH . C 3 HOH A 7 1207 4 HOH HOH . C 3 HOH A 8 1208 49 HOH HOH . C 3 HOH A 9 1209 8 HOH HOH . C 3 HOH A 10 1210 6 HOH HOH . C 3 HOH A 11 1211 17 HOH HOH . C 3 HOH A 12 1212 21 HOH HOH . C 3 HOH A 13 1213 19 HOH HOH . C 3 HOH A 14 1214 3 HOH HOH . C 3 HOH A 15 1215 18 HOH HOH . C 3 HOH A 16 1216 39 HOH HOH . C 3 HOH A 17 1217 27 HOH HOH . C 3 HOH A 18 1218 24 HOH HOH . C 3 HOH A 19 1219 3 HOH HOH . C 3 HOH A 20 1220 7 HOH HOH . C 3 HOH A 21 1221 9 HOH HOH . C 3 HOH A 22 1222 41 HOH HOH . C 3 HOH A 23 1223 20 HOH HOH . C 3 HOH A 24 1224 10 HOH HOH . C 3 HOH A 25 1225 2 HOH HOH . C 3 HOH A 26 1226 7 HOH HOH . C 3 HOH A 27 1227 4 HOH HOH . C 3 HOH A 28 1228 22 HOH HOH . C 3 HOH A 29 1229 43 HOH HOH . C 3 HOH A 30 1230 9 HOH HOH . C 3 HOH A 31 1231 32 HOH HOH . C 3 HOH A 32 1232 11 HOH HOH . C 3 HOH A 33 1233 42 HOH HOH . C 3 HOH A 34 1234 5 HOH HOH . C 3 HOH A 35 1235 59 HOH HOH . C 3 HOH A 36 1236 31 HOH HOH . C 3 HOH A 37 1237 2 HOH HOH . C 3 HOH A 38 1238 13 HOH HOH . C 3 HOH A 39 1239 28 HOH HOH . C 3 HOH A 40 1240 12 HOH HOH . C 3 HOH A 41 1241 23 HOH HOH . C 3 HOH A 42 1242 14 HOH HOH . C 3 HOH A 43 1243 52 HOH HOH . C 3 HOH A 44 1244 26 HOH HOH . C 3 HOH A 45 1245 45 HOH HOH . C 3 HOH A 46 1246 36 HOH HOH . C 3 HOH A 47 1247 37 HOH HOH . C 3 HOH A 48 1248 51 HOH HOH . C 3 HOH A 49 1249 11 HOH HOH . C 3 HOH A 50 1250 30 HOH HOH . C 3 HOH A 51 1251 15 HOH HOH . C 3 HOH A 52 1252 6 HOH HOH . C 3 HOH A 53 1253 33 HOH HOH . C 3 HOH A 54 1254 58 HOH HOH . C 3 HOH A 55 1255 48 HOH HOH . C 3 HOH A 56 1256 53 HOH HOH . C 3 HOH A 57 1257 46 HOH HOH . C 3 HOH A 58 1258 34 HOH HOH . C 3 HOH A 59 1259 25 HOH HOH . C 3 HOH A 60 1260 16 HOH HOH . C 3 HOH A 61 1261 40 HOH HOH . C 3 HOH A 62 1262 47 HOH HOH . C 3 HOH A 63 1263 29 HOH HOH . C 3 HOH A 64 1264 60 HOH HOH . C 3 HOH A 65 1265 56 HOH HOH . C 3 HOH A 66 1266 57 HOH HOH . C 3 HOH A 67 1267 10 HOH HOH . C 3 HOH A 68 1268 8 HOH HOH . C 3 HOH A 69 1269 54 HOH HOH . C 3 HOH A 70 1270 35 HOH HOH . C 3 HOH A 71 1271 44 HOH HOH . C 3 HOH A 72 1272 61 HOH HOH . C 3 HOH A 73 1273 50 HOH HOH . C 3 HOH A 74 1274 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 92Y . . . B 2 22.567 -11.891 7.812 1 43.33 ? C4 92Y 1101 A 1 HETATM 2 C C5 92Y . . . B 2 23.783 -11.988 7.096 1 43.64 ? C5 92Y 1101 A 1 HETATM 3 C C6 92Y . . . B 2 24.044 -11.079 6.062 1 43.76 ? C6 92Y 1101 A 1 HETATM 4 C C7 92Y . . . B 2 23.094 -10.074 5.725 1 42.18 ? C7 92Y 1101 A 1 HETATM 5 C C8 92Y . . . B 2 21.867 -9.974 6.427 1 37.6 ? C8 92Y 1101 A 1 HETATM 6 C C10 92Y . . . B 2 21.019 -7.561 6.768 1 30 ? C10 92Y 1101 A 1 HETATM 7 C C13 92Y . . . B 2 19.323 -8.085 4.339 1 31.02 ? C13 92Y 1101 A 1 HETATM 8 C C15 92Y . . . B 2 19.38 -9.224 6.377 1 32.13 ? C15 92Y 1101 A 1 HETATM 9 C C17 92Y . . . B 2 19.366 -4.201 8.157 1 27.44 ? C17 92Y 1101 A 1 HETATM 10 O O1 92Y . . . B 2 22.009 -6.709 6.228 1 28.86 ? O1 92Y 1101 A 1 HETATM 11 N N2 92Y . . . B 2 20.247 -4.595 7.02 1 31.34 ? N2 92Y 1101 A 1 HETATM 12 C C3 92Y . . . B 2 21.627 -10.903 7.493 1 40.93 ? C3 92Y 1101 A 1 HETATM 13 C C9 92Y . . . B 2 20.848 -8.939 6.031 1 32.89 ? C9 92Y 1101 A 1 HETATM 14 C C11 92Y . . . B 2 19.61 -6.909 6.6 1 32.11 ? C11 92Y 1101 A 1 HETATM 15 C C12 92Y . . . B 2 18.823 -7.931 5.787 1 31.62 ? C12 92Y 1101 A 1 HETATM 16 C C14 92Y . . . B 2 20.719 -8.675 4.503 1 28.79 ? C14 92Y 1101 A 1 HETATM 17 C C16 92Y . . . B 2 19.587 -5.481 6.03 1 30.31 ? C16 92Y 1101 A 1 HETATM 18 C C18 92Y . . . B 2 20.803 -3.406 6.323 1 34.42 ? C18 92Y 1101 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #