data_5VB2 # _model_server_result.job_id TaSZe1vcmaohZyYxSc1hUw _model_server_result.datetime_utc '2024-10-27 12:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":2301}' # _entry.id 5VB2 # _exptl.entry_id 5VB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 614.877 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VB2 _cell.length_a 125.963 _cell.length_b 129.853 _cell.length_c 196.128 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 K N N ? 2 L N N ? 2 R N N ? 2 S N N ? 2 Y N N ? 2 Z N N # _chem_comp.formula 'C32 H58 N2 O7 S' _chem_comp.formula_weight 614.877 _chem_comp.id CPS _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CHAPS # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CPS sing 70 n n C1 C12 CPS sing 71 n n C2 C11 CPS sing 72 n n C2 C15 CPS sing 73 n n C2 C19 CPS sing 74 n n C3 C4 CPS sing 75 n n C3 C19 CPS sing 76 n n C4 C5 CPS sing 77 n n C4 O4 CPS sing 78 n n C5 C6 CPS sing 79 n n C5 C9 CPS sing 80 n n C5 C10 CPS sing 81 n n C6 C7 CPS sing 82 n n C6 C18 CPS sing 83 n n C7 C8 CPS sing 84 n n C8 C9 CPS sing 85 n n C9 C20 CPS sing 86 n n C12 C13 CPS sing 87 n n C13 C14 CPS sing 88 n n C13 O2 CPS sing 89 n n C14 C15 CPS sing 90 n n C15 C16 CPS sing 91 n n C16 C17 CPS sing 92 n n C17 C18 CPS sing 93 n n C17 O3 CPS sing 94 n n C18 C19 CPS sing 95 n n C20 C21 CPS sing 96 n n C20 C22 CPS sing 97 n n C22 C23 CPS sing 98 n n C23 C24 CPS sing 99 n n C24 N1 CPS sing 100 n n C24 O1 CPS doub 101 n n C25 C26 CPS sing 102 n n C25 N1 CPS sing 103 n n C26 C27 CPS sing 104 n n C27 N2 CPS sing 105 n n C28 N2 CPS sing 106 n n C29 N2 CPS sing 107 n n C30 C31 CPS sing 108 n n C30 N2 CPS sing 109 n n C31 C32 CPS sing 110 n n C32 S CPS sing 111 n n O2S S CPS sing 112 n n O3S S CPS doub 113 n n O1S S CPS doub 114 n n C1 H1 CPS sing 115 n n C1 H1A CPS sing 116 n n C3 H3 CPS sing 117 n n C3 H3A CPS sing 118 n n C4 H4 CPS sing 119 n n C6 H6 CPS sing 120 n n C7 H7 CPS sing 121 n n C7 H7A CPS sing 122 n n C8 H8 CPS sing 123 n n C8 H8A CPS sing 124 n n C9 H9 CPS sing 125 n n C10 H10 CPS sing 126 n n C10 H10A CPS sing 127 n n C10 H10B CPS sing 128 n n C11 H11 CPS sing 129 n n C11 H11A CPS sing 130 n n C11 H11B CPS sing 131 n n C12 H12 CPS sing 132 n n C12 H12A CPS sing 133 n n C13 H13 CPS sing 134 n n C14 H14 CPS sing 135 n n C14 H14A CPS sing 136 n n C15 H15 CPS sing 137 n n C16 H16 CPS sing 138 n n C16 H16A CPS sing 139 n n C17 H17 CPS sing 140 n n C18 H18 CPS sing 141 n n C19 H19 CPS sing 142 n n C20 H20 CPS sing 143 n n C21 H21 CPS sing 144 n n C21 H21A CPS sing 145 n n C21 H21B CPS sing 146 n n C22 H22 CPS sing 147 n n C22 H22A CPS sing 148 n n C23 H23 CPS sing 149 n n C23 H23A CPS sing 150 n n C25 H25 CPS sing 151 n n C25 H25A CPS sing 152 n n C26 H261 CPS sing 153 n n C27 H271 CPS sing 154 n n C28 H28 CPS sing 155 n n C28 H28A CPS sing 156 n n C28 H28B CPS sing 157 n n C29 H29 CPS sing 158 n n C29 H29A CPS sing 159 n n C29 H29B CPS sing 160 n n C30 H30 CPS sing 161 n n C30 H30A CPS sing 162 n n C31 H31 CPS sing 163 n n C31 H31A CPS sing 164 n n C32 H32 CPS sing 165 n n C32 H32A CPS sing 166 n n N1 HN1 CPS sing 167 n n O2 HO2 CPS sing 168 n n O3 HO3 CPS sing 169 n n O4 HO4 CPS sing 170 n n C26 H262 CPS sing 171 n n C27 H272 CPS sing 172 n n # _atom_sites.entry_id 5VB2 _atom_sites.fract_transf_matrix[1][1] 0.007939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CPS A 1 1301 1301 CPS CPS . F 2 CPS A 1 1302 1302 CPS CPS . G 3 PX4 A 1 1303 1303 PX4 PX4 . H 3 PX4 A 1 1304 1304 PX4 PX4 . I 3 PX4 A 1 1305 1305 PX4 PX4 . J 4 PO4 A 1 1306 1306 PO4 PO4 . K 2 CPS B 1 2301 2301 CPS CPS . L 2 CPS B 1 2302 2302 CPS CPS . M 3 PX4 B 1 2303 2303 PX4 PX4 . N 3 PX4 B 1 2304 2304 PX4 PX4 . O 3 PX4 B 1 2305 2305 PX4 PX4 . P 3 PX4 B 1 2306 2306 PX4 PX4 . Q 4 PO4 B 1 2307 2307 PO4 PO4 . R 2 CPS C 1 1301 1301 CPS CPS . S 2 CPS C 1 1302 1302 CPS CPS . T 3 PX4 C 1 1303 1303 PX4 PX4 . U 3 PX4 C 1 1304 1304 PX4 PX4 . V 3 PX4 C 1 1305 1305 PX4 PX4 . W 4 PO4 C 1 1306 1306 PO4 PO4 . X 5 CL C 1 1307 1307 CL CL . Y 2 CPS D 1 2301 2301 CPS CPS . Z 2 CPS D 1 2302 2302 CPS CPS . AA 3 PX4 D 1 2303 2303 PX4 PX4 . BA 3 PX4 D 1 2304 2304 PX4 PX4 . CA 3 PX4 D 1 2305 2305 PX4 PX4 . DA 4 PO4 D 1 2306 2306 PO4 PO4 . EA 6 HOH A 1 1401 1401 HOH HOH . EA 6 HOH A 2 1402 1402 HOH HOH . EA 6 HOH A 3 1403 1403 HOH HOH . EA 6 HOH A 4 1404 1404 HOH HOH . EA 6 HOH A 5 1405 1405 HOH HOH . EA 6 HOH A 6 1406 1406 HOH HOH . EA 6 HOH A 7 1407 1407 HOH HOH . EA 6 HOH A 8 1408 1408 HOH HOH . FA 6 HOH B 1 2401 2401 HOH HOH . FA 6 HOH B 2 2402 2402 HOH HOH . FA 6 HOH B 3 2403 2403 HOH HOH . FA 6 HOH B 4 2404 2404 HOH HOH . FA 6 HOH B 5 2405 2405 HOH HOH . FA 6 HOH B 6 2406 2406 HOH HOH . GA 6 HOH C 1 1401 1401 HOH HOH . GA 6 HOH C 2 1402 1402 HOH HOH . GA 6 HOH C 3 1403 1403 HOH HOH . GA 6 HOH C 4 1404 1404 HOH HOH . GA 6 HOH C 5 1405 1405 HOH HOH . HA 6 HOH D 1 2401 2401 HOH HOH . HA 6 HOH D 2 2402 2402 HOH HOH . HA 6 HOH D 3 2403 2403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CPS . . . Y 2 -7.246 164.451 47.286 1 89.77 ? C1 CPS 2301 D 1 HETATM 2 C C2 CPS . . . Y 2 -7.193 164.2 45.766 1 88.32 ? C2 CPS 2301 D 1 HETATM 3 C C3 CPS . . . Y 2 -6.748 166.643 45.227 1 83.58 ? C3 CPS 2301 D 1 HETATM 4 C C4 CPS . . . Y 2 -7.224 167.888 44.471 1 81.59 ? C4 CPS 2301 D 1 HETATM 5 C C5 CPS . . . Y 2 -7.192 167.614 42.976 1 81.88 ? C5 CPS 2301 D 1 HETATM 6 C C6 CPS . . . Y 2 -8.166 166.414 42.742 1 81.69 ? C6 CPS 2301 D 1 HETATM 7 C C7 CPS . . . Y 2 -8.242 166.387 41.211 1 80.94 ? C7 CPS 2301 D 1 HETATM 8 C C8 CPS . . . Y 2 -8.304 167.899 40.844 1 80.77 ? C8 CPS 2301 D 1 HETATM 9 C C9 CPS . . . Y 2 -7.852 168.686 42.101 1 80.77 ? C9 CPS 2301 D 1 HETATM 10 C C10 CPS . . . Y 2 -5.763 167.341 42.457 1 80.77 ? C10 CPS 2301 D 1 HETATM 11 C C11 CPS . . . Y 2 -5.735 163.824 45.466 1 88.59 ? C11 CPS 2301 D 1 HETATM 12 C C12 CPS . . . Y 2 -8.679 164.618 47.796 1 90.84 ? C12 CPS 2301 D 1 HETATM 13 C C13 CPS . . . Y 2 -9.395 163.296 47.558 1 91.17 ? C13 CPS 2301 D 1 HETATM 14 C C14 CPS . . . Y 2 -9.473 163.073 46.049 1 90.11 ? C14 CPS 2301 D 1 HETATM 15 C C15 CPS . . . Y 2 -8.063 162.968 45.447 1 88.77 ? C15 CPS 2301 D 1 HETATM 16 C C16 CPS . . . Y 2 -8.158 162.728 43.929 1 87.68 ? C16 CPS 2301 D 1 HETATM 17 C C17 CPS . . . Y 2 -8.592 163.964 43.126 1 86.01 ? C17 CPS 2301 D 1 HETATM 18 C C18 CPS . . . Y 2 -7.666 165.146 43.433 1 84.43 ? C18 CPS 2301 D 1 HETATM 19 C C19 CPS . . . Y 2 -7.643 165.435 44.95 1 85.75 ? C19 CPS 2301 D 1 HETATM 20 C C20 CPS . . . Y 2 -6.959 169.866 41.657 1 80.77 ? C20 CPS 2301 D 1 HETATM 21 C C21 CPS . . . Y 2 -6.318 170.611 42.839 1 80.77 ? C21 CPS 2301 D 1 HETATM 22 C C22 CPS . . . Y 2 -7.865 170.805 40.839 1 80.77 ? C22 CPS 2301 D 1 HETATM 23 C C23 CPS . . . Y 2 -7.507 172.29 40.984 1 80.77 ? C23 CPS 2301 D 1 HETATM 24 O O2 CPS . . . Y 2 -10.713 163.346 48.107 1 92.11 ? O2 CPS 2301 D 1 HETATM 25 O O3 CPS . . . Y 2 -9.952 164.301 43.409 1 86.25 ? O3 CPS 2301 D 1 HETATM 26 O O4 CPS . . . Y 2 -8.566 168.182 44.869 1 80.77 ? O4 CPS 2301 D 1 HETATM 27 H H1 CPS . . . Y 2 -6.786 163.607 47.799 1 107.73 ? H1 CPS 2301 D 1 HETATM 28 H H1A CPS . . . Y 2 -6.682 165.355 47.516 1 107.73 ? H1A CPS 2301 D 1 HETATM 29 H H3 CPS . . . Y 2 -5.729 166.409 44.921 1 100.29 ? H3 CPS 2301 D 1 HETATM 30 H H3A CPS . . . Y 2 -6.756 166.853 46.297 1 100.29 ? H3A CPS 2301 D 1 HETATM 31 H H4 CPS . . . Y 2 -6.575 168.732 44.705 1 97.9 ? H4 CPS 2301 D 1 HETATM 32 H H6 CPS . . . Y 2 -9.148 166.672 43.139 1 98.03 ? H6 CPS 2301 D 1 HETATM 33 H H7 CPS . . . Y 2 -7.352 165.921 40.788 1 97.12 ? H7 CPS 2301 D 1 HETATM 34 H H7A CPS . . . Y 2 -9.143 165.872 40.879 1 97.12 ? H7A CPS 2301 D 1 HETATM 35 H H8 CPS . . . Y 2 -7.633 168.107 40.011 1 96.92 ? H8 CPS 2301 D 1 HETATM 36 H H8A CPS . . . Y 2 -9.324 168.176 40.578 1 96.92 ? H8A CPS 2301 D 1 HETATM 37 H H9 CPS . . . Y 2 -8.73 169.076 42.615 1 96.92 ? H9 CPS 2301 D 1 HETATM 38 H H10 CPS . . . Y 2 -5.428 166.367 42.812 1 96.92 ? H10 CPS 2301 D 1 HETATM 39 H H10A CPS . . . Y 2 -5.764 167.351 41.367 1 96.92 ? H10A CPS 2301 D 1 HETATM 40 H H10B CPS . . . Y 2 -5.088 168.114 42.827 1 96.92 ? H10B CPS 2301 D 1 HETATM 41 H H11 CPS . . . Y 2 -5.509 162.859 45.92 1 106.31 ? H11 CPS 2301 D 1 HETATM 42 H H11A CPS . . . Y 2 -5.59 163.761 44.388 1 106.31 ? H11A CPS 2301 D 1 HETATM 43 H H11B CPS . . . Y 2 -5.072 164.584 45.878 1 106.31 ? H11B CPS 2301 D 1 HETATM 44 H H12 CPS . . . Y 2 -8.67 164.85 48.86 1 109 ? H12 CPS 2301 D 1 HETATM 45 H H12A CPS . . . Y 2 -9.179 165.415 47.245 1 109 ? H12A CPS 2301 D 1 HETATM 46 H H13 CPS . . . Y 2 -8.834 162.485 48.022 1 109.41 ? H13 CPS 2301 D 1 HETATM 47 H H14 CPS . . . Y 2 -10.021 162.152 45.849 1 108.13 ? H14 CPS 2301 D 1 HETATM 48 H H14A CPS . . . Y 2 -9.998 163.911 45.589 1 108.13 ? H14A CPS 2301 D 1 HETATM 49 H H15 CPS . . . Y 2 -7.578 162.097 45.889 1 106.53 ? H15 CPS 2301 D 1 HETATM 50 H H16 CPS . . . Y 2 -7.182 162.405 43.568 1 105.21 ? H16 CPS 2301 D 1 HETATM 51 H H16A CPS . . . Y 2 -8.876 161.927 43.749 1 105.21 ? H16A CPS 2301 D 1 HETATM 52 H H17 CPS . . . Y 2 -8.51 163.729 42.065 1 103.21 ? H17 CPS 2301 D 1 HETATM 53 H H18 CPS . . . Y 2 -6.661 164.916 43.078 1 101.31 ? H18 CPS 2301 D 1 HETATM 54 H H19 CPS . . . Y 2 -8.659 165.689 45.252 1 102.91 ? H19 CPS 2301 D 1 HETATM 55 H H20 CPS . . . Y 2 -6.169 169.486 41.01 1 96.92 ? H20 CPS 2301 D 1 HETATM 56 H H21 CPS . . . Y 2 -5.715 169.915 43.422 1 96.92 ? H21 CPS 2301 D 1 HETATM 57 H H21A CPS . . . Y 2 -5.683 171.413 42.462 1 96.92 ? H21A CPS 2301 D 1 HETATM 58 H H21B CPS . . . Y 2 -7.1 171.032 43.47 1 96.92 ? H21B CPS 2301 D 1 HETATM 59 H H22 CPS . . . Y 2 -7.788 170.531 39.786 1 96.92 ? H22 CPS 2301 D 1 HETATM 60 H H22A CPS . . . Y 2 -8.896 170.662 41.161 1 96.92 ? H22A CPS 2301 D 1 HETATM 61 H H23 CPS . . . Y 2 -7.732 172.619 41.999 1 96.92 ? H23 CPS 2301 D 1 HETATM 62 H H23A CPS . . . Y 2 -6.444 172.43 40.783 1 96.92 ? H23A CPS 2301 D 1 HETATM 63 H HO2 CPS . . . Y 2 -10.785 162.965 48.992 1 110.53 ? HO2 CPS 2301 D 1 HETATM 64 H HO3 CPS . . . Y 2 -10.597 163.688 43.031 1 103.5 ? HO3 CPS 2301 D 1 HETATM 65 H HO4 CPS . . . Y 2 -8.642 168.937 45.467 1 96.92 ? HO4 CPS 2301 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #