data_5VB5
#
_model_server_result.job_id            R7UrAZKxi9nnkcs5U8dNKw 
_model_server_result.datetime_utc      '2024-11-14 13:27:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5VB5 
#
_exptl.entry_id    5VB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              526.11 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2R)-3-(4-{[3-(4-chlorophenyl)propanoyl]amino}phenyl)-1-(4-methylpiperidin-1-yl)-1-oxopropan-2-yl]-4-methylpentanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VB5 
_cell.length_a            60.468 
_cell.length_b            60.468 
_cell.length_c            154.997 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O CYS 123 A CYS 366 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc2 A OG SER 165 A SER 408 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc3 B NA NA . A NA 601 1_555 D O HOH . A HOH 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc4 B NA NA . A NA 601 1_555 D O HOH . A HOH 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc5 B NA NA . A NA 601 1_555 D O HOH . A HOH 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
#
_chem_comp.formula           'C30 H40 Cl N3 O3' 
_chem_comp.formula_weight    526.11 
_chem_comp.id                92A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2R)-3-(4-{[3-(4-chlorophenyl)propanoyl]amino}phenyl)-1-(4-methylpiperidin-1-yl)-1-oxopropan-2-yl]-4-methylpentanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O31 C30 92A doub 1 n n 
C38 C37 92A sing 2 n n 
C38 N32 92A sing 3 n n 
C37 C35 92A sing 4 n n 
C13 C14 92A doub 5 n y 
C13 C12 92A sing 6 n y 
C30 N32 92A sing 7 n n 
C30 C9 92A sing 8 n n 
O18 C17 92A doub 9 n n 
C14 C15 92A sing 10 n y 
C27 C26 92A doub 11 n y 
C27 C21 92A sing 12 n y 
C5 C6 92A sing 13 n n 
C5 C4 92A sing 14 n n 
N32 C33 92A sing 15 n n 
C26 C24 92A sing 16 n y 
C20 C21 92A sing 17 n n 
C20 C19 92A sing 18 n n 
C11 C9 92A sing 19 n n 
C11 C12 92A sing 20 n n 
N8 C6 92A sing 21 n n 
N8 C9 92A sing 22 n n 
C6 O7 92A doub 23 n n 
C21 C22 92A doub 24 n y 
C12 C29 92A doub 25 n y 
C35 C36 92A sing 26 n n 
C35 C34 92A sing 27 n n 
C17 C19 92A sing 28 n n 
C17 N16 92A sing 29 n n 
C3 C2 92A sing 30 n n 
C24 CL1 92A sing 31 n n 
C24 C23 92A doub 32 n y 
C15 N16 92A sing 33 n n 
C15 C28 92A doub 34 n y 
C2 C4 92A sing 35 n n 
C2 C1 92A sing 36 n n 
C22 C23 92A sing 37 n y 
C33 C34 92A sing 38 n n 
C29 C28 92A sing 39 n y 
C4 H1 92A sing 40 n n 
C4 H2 92A sing 41 n n 
C5 H3 92A sing 42 n n 
C5 H4 92A sing 43 n n 
C13 H5 92A sing 44 n n 
C20 H6 92A sing 45 n n 
C20 H7 92A sing 46 n n 
C22 H8 92A sing 47 n n 
C26 H9 92A sing 48 n n 
C28 H10 92A sing 49 n n 
C38 H11 92A sing 50 n n 
C38 H12 92A sing 51 n n 
C37 H13 92A sing 52 n n 
C37 H14 92A sing 53 n n 
C35 H15 92A sing 54 n n 
C36 H16 92A sing 55 n n 
C36 H17 92A sing 56 n n 
C36 H18 92A sing 57 n n 
C34 H19 92A sing 58 n n 
C34 H20 92A sing 59 n n 
C33 H21 92A sing 60 n n 
C33 H22 92A sing 61 n n 
C9 H23 92A sing 62 n n 
N8 H24 92A sing 63 n n 
C2 H25 92A sing 64 n n 
C3 H26 92A sing 65 n n 
C3 H27 92A sing 66 n n 
C3 H28 92A sing 67 n n 
C1 H29 92A sing 68 n n 
C1 H30 92A sing 69 n n 
C1 H31 92A sing 70 n n 
C11 H32 92A sing 71 n n 
C11 H33 92A sing 72 n n 
C29 H34 92A sing 73 n n 
C14 H35 92A sing 74 n n 
N16 H36 92A sing 75 n n 
C19 H37 92A sing 76 n n 
C19 H38 92A sing 77 n n 
C27 H39 92A sing 78 n n 
C23 H40 92A sing 79 n n 
#
_atom_sites.entry_id                     5VB5 
_atom_sites.fract_transf_matrix[1][1]    0.016538 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016538 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 601 1 NA NA . 
C 3 92A A 1 602 990 92A LIG . 
D 4 HOH A 1 701 68 HOH HOH . 
D 4 HOH A 2 702 77 HOH HOH . 
D 4 HOH A 3 703 74 HOH HOH . 
D 4 HOH A 4 704 76 HOH HOH . 
D 4 HOH A 5 705 119 HOH HOH . 
D 4 HOH A 6 706 78 HOH HOH . 
D 4 HOH A 7 707 5 HOH HOH . 
D 4 HOH A 8 708 82 HOH HOH . 
D 4 HOH A 9 709 61 HOH HOH . 
D 4 HOH A 10 710 32 HOH HOH . 
D 4 HOH A 11 711 11 HOH HOH . 
D 4 HOH A 12 712 65 HOH HOH . 
D 4 HOH A 13 713 13 HOH HOH . 
D 4 HOH A 14 714 15 HOH HOH . 
D 4 HOH A 15 715 9 HOH HOH . 
D 4 HOH A 16 716 85 HOH HOH . 
D 4 HOH A 17 717 1 HOH HOH . 
D 4 HOH A 18 718 92 HOH HOH . 
D 4 HOH A 19 719 91 HOH HOH . 
D 4 HOH A 20 720 109 HOH HOH . 
D 4 HOH A 21 721 54 HOH HOH . 
D 4 HOH A 22 722 30 HOH HOH . 
D 4 HOH A 23 723 27 HOH HOH . 
D 4 HOH A 24 724 101 HOH HOH . 
D 4 HOH A 25 725 118 HOH HOH . 
D 4 HOH A 26 726 2 HOH HOH . 
D 4 HOH A 27 727 23 HOH HOH . 
D 4 HOH A 28 728 3 HOH HOH . 
D 4 HOH A 29 729 108 HOH HOH . 
D 4 HOH A 30 730 60 HOH HOH . 
D 4 HOH A 31 731 113 HOH HOH . 
D 4 HOH A 32 732 120 HOH HOH . 
D 4 HOH A 33 733 42 HOH HOH . 
D 4 HOH A 34 734 7 HOH HOH . 
D 4 HOH A 35 735 6 HOH HOH . 
D 4 HOH A 36 736 69 HOH HOH . 
D 4 HOH A 37 737 18 HOH HOH . 
D 4 HOH A 38 738 33 HOH HOH . 
D 4 HOH A 39 739 12 HOH HOH . 
D 4 HOH A 40 740 41 HOH HOH . 
D 4 HOH A 41 741 73 HOH HOH . 
D 4 HOH A 42 742 89 HOH HOH . 
D 4 HOH A 43 743 19 HOH HOH . 
D 4 HOH A 44 744 4 HOH HOH . 
D 4 HOH A 45 745 26 HOH HOH . 
D 4 HOH A 46 746 22 HOH HOH . 
D 4 HOH A 47 747 50 HOH HOH . 
D 4 HOH A 48 748 75 HOH HOH . 
D 4 HOH A 49 749 10 HOH HOH . 
D 4 HOH A 50 750 43 HOH HOH . 
D 4 HOH A 51 751 84 HOH HOH . 
D 4 HOH A 52 752 35 HOH HOH . 
D 4 HOH A 53 753 31 HOH HOH . 
D 4 HOH A 54 754 29 HOH HOH . 
D 4 HOH A 55 755 98 HOH HOH . 
D 4 HOH A 56 756 88 HOH HOH . 
D 4 HOH A 57 757 56 HOH HOH . 
D 4 HOH A 58 758 17 HOH HOH . 
D 4 HOH A 59 759 8 HOH HOH . 
D 4 HOH A 60 760 103 HOH HOH . 
D 4 HOH A 61 761 104 HOH HOH . 
D 4 HOH A 62 762 24 HOH HOH . 
D 4 HOH A 63 763 106 HOH HOH . 
D 4 HOH A 64 764 16 HOH HOH . 
D 4 HOH A 65 765 51 HOH HOH . 
D 4 HOH A 66 766 90 HOH HOH . 
D 4 HOH A 67 767 38 HOH HOH . 
D 4 HOH A 68 768 28 HOH HOH . 
D 4 HOH A 69 769 83 HOH HOH . 
D 4 HOH A 70 770 96 HOH HOH . 
D 4 HOH A 71 771 110 HOH HOH . 
D 4 HOH A 72 772 25 HOH HOH . 
D 4 HOH A 73 773 57 HOH HOH . 
D 4 HOH A 74 774 87 HOH HOH . 
D 4 HOH A 75 775 14 HOH HOH . 
D 4 HOH A 76 776 20 HOH HOH . 
D 4 HOH A 77 777 53 HOH HOH . 
D 4 HOH A 78 778 36 HOH HOH . 
D 4 HOH A 79 779 112 HOH HOH . 
D 4 HOH A 80 780 81 HOH HOH . 
D 4 HOH A 81 781 44 HOH HOH . 
D 4 HOH A 82 782 100 HOH HOH . 
D 4 HOH A 83 783 116 HOH HOH . 
D 4 HOH A 84 784 37 HOH HOH . 
D 4 HOH A 85 785 95 HOH HOH . 
D 4 HOH A 86 786 102 HOH HOH . 
D 4 HOH A 87 787 21 HOH HOH . 
D 4 HOH A 88 788 111 HOH HOH . 
D 4 HOH A 89 789 99 HOH HOH . 
D 4 HOH A 90 790 66 HOH HOH . 
D 4 HOH A 91 791 114 HOH HOH . 
D 4 HOH A 92 792 121 HOH HOH . 
D 4 HOH A 93 793 52 HOH HOH . 
D 4 HOH A 94 794 86 HOH HOH . 
D 4 HOH A 95 795 93 HOH HOH . 
D 4 HOH A 96 796 79 HOH HOH . 
D 4 HOH A 97 797 107 HOH HOH . 
D 4 HOH A 98 798 47 HOH HOH . 
D 4 HOH A 99 799 64 HOH HOH . 
D 4 HOH A 100 800 63 HOH HOH . 
D 4 HOH A 101 801 62 HOH HOH . 
D 4 HOH A 102 802 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 92A . . . C 3 0.59 24.486 15.658 1 50.67 ? C4 92A 602 A 1 
HETATM 2 C C5 92A . . . C 3 -0.18 24.481 14.338 1 53.86 ? C5 92A 602 A 1 
HETATM 3 C C6 92A . . . C 3 -1.642 24.719 14.597 1 54.11 ? C6 92A 602 A 1 
HETATM 4 C C13 92A . . . C 3 -7.112 22.811 13.814 1 48.9 ? C13 92A 602 A 1 
HETATM 5 C C15 92A . . . C 3 -8.877 23.022 15.43 1 56.89 ? C15 92A 602 A 1 
HETATM 6 C C17 92A . . . C 3 -11.125 23.809 15.003 1 50.63 ? C17 92A 602 A 1 
HETATM 7 C C20 92A . . . C 3 -13.421 22.987 14.482 1 55.7 ? C20 92A 602 A 1 
HETATM 8 C C21 92A . . . C 3 -13.158 21.538 14.787 1 53.7 ? C21 92A 602 A 1 
HETATM 9 C C22 92A . . . C 3 -13.934 20.877 15.72 1 60.21 ? C22 92A 602 A 1 
HETATM 10 C C24 92A . . . C 3 -12.666 18.879 15.368 1 76.49 ? C24 92A 602 A 1 
HETATM 11 C C26 92A . . . C 3 -11.89 19.542 14.434 1 67.89 ? C26 92A 602 A 1 
HETATM 12 C C28 92A . . . C 3 -7.932 22.974 16.444 1 56.23 ? C28 92A 602 A 1 
HETATM 13 O O31 92A . . . C 3 -4.224 24.927 12.674 1 51.53 ? O31 92A 602 A 1 
HETATM 14 C C30 92A . . . C 3 -4.447 24.998 13.863 1 67.9 ? C30 92A 602 A 1 
HETATM 15 N N32 92A . . . C 3 -5.154 26.033 14.36 1 53.38 ? N32 92A 602 A 1 
HETATM 16 C C38 92A . . . C 3 -5.653 27.085 13.464 1 57.27 ? C38 92A 602 A 1 
HETATM 17 C C37 92A . . . C 3 -7.151 27.337 13.663 1 49.87 ? C37 92A 602 A 1 
HETATM 18 C C35 92A . . . C 3 -7.72 26.735 14.953 1 53.82 ? C35 92A 602 A 1 
HETATM 19 C C36 92A . . . C 3 -9.023 27.448 15.312 1 50.56 ? C36 92A 602 A 1 
HETATM 20 C C34 92A . . . C 3 -6.724 26.897 16.102 1 52.94 ? C34 92A 602 A 1 
HETATM 21 C C33 92A . . . C 3 -5.429 26.13 15.802 1 59.32 ? C33 92A 602 A 1 
HETATM 22 C C9 92A . . . C 3 -3.938 23.919 14.782 1 56.37 ? C9 92A 602 A 1 
HETATM 23 N N8 92A . . . C 3 -2.513 23.695 14.538 1 51.5 ? N8 92A 602 A 1 
HETATM 24 O O7 92A . . . C 3 -2.03 25.834 14.851 1 51.72 ? O7 92A 602 A 1 
HETATM 25 C C2 92A . . . C 3 1.954 23.835 15.442 1 57.34 ? C2 92A 602 A 1 
HETATM 26 C C3 92A . . . C 3 1.754 22.354 15.126 1 53.68 ? C3 92A 602 A 1 
HETATM 27 C C1 92A . . . C 3 2.805 23.984 16.704 1 42.17 ? C1 92A 602 A 1 
HETATM 28 C C11 92A . . . C 3 -4.708 22.63 14.506 1 54.03 ? C11 92A 602 A 1 
HETATM 29 C C12 92A . . . C 3 -6.174 22.772 14.831 1 62.99 ? C12 92A 602 A 1 
HETATM 30 C C29 92A . . . C 3 -6.589 22.852 16.147 1 52.79 ? C29 92A 602 A 1 
HETATM 31 C C14 92A . . . C 3 -8.457 22.932 14.108 1 50.1 ? C14 92A 602 A 1 
HETATM 32 N N16 92A . . . C 3 -10.236 23.13 15.75 1 46.37 ? N16 92A 602 A 1 
HETATM 33 O O18 92A . . . C 3 -10.768 24.384 14.003 1 60.3 ? O18 92A 602 A 1 
HETATM 34 C C19 92A . . . C 3 -12.575 23.862 15.416 1 60.43 ? C19 92A 602 A 1 
HETATM 35 C C27 92A . . . C 3 -12.136 20.871 14.144 1 56.17 ? C27 92A 602 A 1 
HETATM 36 CL CL1 92A . . . C 3 -12.353 17.214 15.733 1 81.31 ? CL1 92A 602 A 1 
HETATM 37 C C23 92A . . . C 3 -13.691 19.549 16.009 1 65.02 ? C23 92A 602 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           152 
_model_server_stats.create_model_time_ms    81 
_model_server_stats.query_time_ms           419 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#