data_5VBB # _model_server_result.job_id Gb-e3vnBgboCEhQn9msDrw _model_server_result.datetime_utc '2024-11-05 01:03:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5VBB # _exptl.entry_id 5VBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VBB _cell.length_a 55.2 _cell.length_b 92.44 _cell.length_c 88.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 131 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 131 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 138 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 138 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.058 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 303 n n S O2 SO4 doub 304 n n S O3 SO4 sing 305 n n S O4 SO4 sing 306 n n # _atom_sites.entry_id 5VBB _atom_sites.fract_transf_matrix[1][1] 0.018116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 2 SO4 A 1 303 3 SO4 SO4 . E 3 CL A 1 304 1 CL CL . F 3 CL A 1 305 2 CL CL . G 4 GOL A 1 306 501 GOL GOL . H 5 HOH A 1 401 16 HOH HOH . H 5 HOH A 2 402 69 HOH HOH . H 5 HOH A 3 403 58 HOH HOH . H 5 HOH A 4 404 27 HOH HOH . H 5 HOH A 5 405 9 HOH HOH . H 5 HOH A 6 406 32 HOH HOH . H 5 HOH A 7 407 56 HOH HOH . H 5 HOH A 8 408 55 HOH HOH . H 5 HOH A 9 409 111 HOH HOH . H 5 HOH A 10 410 108 HOH HOH . H 5 HOH A 11 411 5 HOH HOH . H 5 HOH A 12 412 47 HOH HOH . H 5 HOH A 13 413 45 HOH HOH . H 5 HOH A 14 414 91 HOH HOH . H 5 HOH A 15 415 18 HOH HOH . H 5 HOH A 16 416 28 HOH HOH . H 5 HOH A 17 417 13 HOH HOH . H 5 HOH A 18 418 22 HOH HOH . H 5 HOH A 19 419 83 HOH HOH . H 5 HOH A 20 420 23 HOH HOH . H 5 HOH A 21 421 75 HOH HOH . H 5 HOH A 22 422 105 HOH HOH . H 5 HOH A 23 423 90 HOH HOH . H 5 HOH A 24 424 66 HOH HOH . H 5 HOH A 25 425 51 HOH HOH . H 5 HOH A 26 426 15 HOH HOH . H 5 HOH A 27 427 46 HOH HOH . H 5 HOH A 28 428 110 HOH HOH . H 5 HOH A 29 429 1 HOH HOH . H 5 HOH A 30 430 17 HOH HOH . H 5 HOH A 31 431 57 HOH HOH . H 5 HOH A 32 432 6 HOH HOH . H 5 HOH A 33 433 31 HOH HOH . H 5 HOH A 34 434 103 HOH HOH . H 5 HOH A 35 435 74 HOH HOH . H 5 HOH A 36 436 76 HOH HOH . H 5 HOH A 37 437 38 HOH HOH . H 5 HOH A 38 438 19 HOH HOH . H 5 HOH A 39 439 72 HOH HOH . H 5 HOH A 40 440 102 HOH HOH . H 5 HOH A 41 441 37 HOH HOH . H 5 HOH A 42 442 92 HOH HOH . H 5 HOH A 43 443 87 HOH HOH . H 5 HOH A 44 444 12 HOH HOH . H 5 HOH A 45 445 109 HOH HOH . H 5 HOH A 46 446 21 HOH HOH . H 5 HOH A 47 447 112 HOH HOH . H 5 HOH A 48 448 7 HOH HOH . H 5 HOH A 49 449 101 HOH HOH . H 5 HOH A 50 450 86 HOH HOH . H 5 HOH A 51 451 62 HOH HOH . H 5 HOH A 52 452 99 HOH HOH . H 5 HOH A 53 453 36 HOH HOH . H 5 HOH A 54 454 65 HOH HOH . H 5 HOH A 55 455 30 HOH HOH . H 5 HOH A 56 456 14 HOH HOH . H 5 HOH A 57 457 70 HOH HOH . H 5 HOH A 58 458 98 HOH HOH . H 5 HOH A 59 459 33 HOH HOH . H 5 HOH A 60 460 84 HOH HOH . H 5 HOH A 61 461 50 HOH HOH . H 5 HOH A 62 462 43 HOH HOH . H 5 HOH A 63 463 94 HOH HOH . H 5 HOH A 64 464 4 HOH HOH . H 5 HOH A 65 465 113 HOH HOH . H 5 HOH A 66 466 42 HOH HOH . H 5 HOH A 67 467 2 HOH HOH . H 5 HOH A 68 468 1 HOH HOH . H 5 HOH A 69 469 54 HOH HOH . H 5 HOH A 70 470 24 HOH HOH . H 5 HOH A 71 471 104 HOH HOH . H 5 HOH A 72 472 3 HOH HOH . H 5 HOH A 73 473 96 HOH HOH . H 5 HOH A 74 474 25 HOH HOH . H 5 HOH A 75 475 44 HOH HOH . H 5 HOH A 76 476 5 HOH HOH . H 5 HOH A 77 477 4 HOH HOH . H 5 HOH A 78 478 48 HOH HOH . H 5 HOH A 79 479 41 HOH HOH . H 5 HOH A 80 480 40 HOH HOH . H 5 HOH A 81 481 107 HOH HOH . H 5 HOH A 82 482 61 HOH HOH . H 5 HOH A 83 483 39 HOH HOH . H 5 HOH A 84 484 60 HOH HOH . H 5 HOH A 85 485 20 HOH HOH . H 5 HOH A 86 486 49 HOH HOH . H 5 HOH A 87 487 2 HOH HOH . H 5 HOH A 88 488 89 HOH HOH . H 5 HOH A 89 489 35 HOH HOH . H 5 HOH A 90 490 95 HOH HOH . H 5 HOH A 91 491 81 HOH HOH . H 5 HOH A 92 492 71 HOH HOH . H 5 HOH A 93 493 29 HOH HOH . H 5 HOH A 94 494 93 HOH HOH . H 5 HOH A 95 495 80 HOH HOH . H 5 HOH A 96 496 63 HOH HOH . H 5 HOH A 97 497 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 23.713 35.318 22.234 1 78.41 ? S SO4 302 A 1 HETATM 2 O O1 SO4 . . . C 2 24.541 34.127 22.055 1 78.56 ? O1 SO4 302 A 1 HETATM 3 O O2 SO4 . . . C 2 23.8 36.126 21.045 1 78.48 ? O2 SO4 302 A 1 HETATM 4 O O3 SO4 . . . C 2 22.329 34.973 22.385 1 81.17 ? O3 SO4 302 A 1 HETATM 5 O O4 SO4 . . . C 2 24.151 36.054 23.411 1 81.34 ? O4 SO4 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #