data_5VBD # _model_server_result.job_id MKWdYYXLgX6hCGOLP3Prmg _model_server_result.datetime_utc '2025-03-06 10:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 5VBD # _exptl.entry_id 5VBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight ? _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VBD _cell.length_a 46.723 _cell.length_b 125.294 _cell.length_c 29.546 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VBD _atom_sites.fract_transf_matrix[1][1] 0.021403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 1001 1001 UNX UNX . C 2 UNX A 1 1002 1002 UNX UNX . D 2 UNX A 1 1003 1003 UNX UNX . E 3 HOH A 1 1101 25 HOH HOH . E 3 HOH A 2 1102 18 HOH HOH . E 3 HOH A 3 1103 30 HOH HOH . E 3 HOH A 4 1104 47 HOH HOH . E 3 HOH A 5 1105 22 HOH HOH . E 3 HOH A 6 1106 31 HOH HOH . E 3 HOH A 7 1107 17 HOH HOH . E 3 HOH A 8 1108 1 HOH HOH . E 3 HOH A 9 1109 38 HOH HOH . E 3 HOH A 10 1110 42 HOH HOH . E 3 HOH A 11 1111 5 HOH HOH . E 3 HOH A 12 1112 4 HOH HOH . E 3 HOH A 13 1113 11 HOH HOH . E 3 HOH A 14 1114 27 HOH HOH . E 3 HOH A 15 1115 26 HOH HOH . E 3 HOH A 16 1116 63 HOH HOH . E 3 HOH A 17 1117 2 HOH HOH . E 3 HOH A 18 1118 21 HOH HOH . E 3 HOH A 19 1119 58 HOH HOH . E 3 HOH A 20 1120 64 HOH HOH . E 3 HOH A 21 1121 3 HOH HOH . E 3 HOH A 22 1122 39 HOH HOH . E 3 HOH A 23 1123 60 HOH HOH . E 3 HOH A 24 1124 12 HOH HOH . E 3 HOH A 25 1125 34 HOH HOH . E 3 HOH A 26 1126 67 HOH HOH . E 3 HOH A 27 1127 65 HOH HOH . E 3 HOH A 28 1128 44 HOH HOH . E 3 HOH A 29 1129 16 HOH HOH . E 3 HOH A 30 1130 37 HOH HOH . E 3 HOH A 31 1131 14 HOH HOH . E 3 HOH A 32 1132 24 HOH HOH . E 3 HOH A 33 1133 20 HOH HOH . E 3 HOH A 34 1134 70 HOH HOH . E 3 HOH A 35 1135 15 HOH HOH . E 3 HOH A 36 1136 36 HOH HOH . E 3 HOH A 37 1137 13 HOH HOH . E 3 HOH A 38 1138 33 HOH HOH . E 3 HOH A 39 1139 45 HOH HOH . E 3 HOH A 40 1140 7 HOH HOH . E 3 HOH A 41 1141 9 HOH HOH . E 3 HOH A 42 1142 10 HOH HOH . E 3 HOH A 43 1143 55 HOH HOH . E 3 HOH A 44 1144 69 HOH HOH . E 3 HOH A 45 1145 51 HOH HOH . E 3 HOH A 46 1146 46 HOH HOH . E 3 HOH A 47 1147 49 HOH HOH . E 3 HOH A 48 1148 59 HOH HOH . E 3 HOH A 49 1149 6 HOH HOH . E 3 HOH A 50 1150 8 HOH HOH . E 3 HOH A 51 1151 32 HOH HOH . E 3 HOH A 52 1152 19 HOH HOH . E 3 HOH A 53 1153 54 HOH HOH . E 3 HOH A 54 1154 40 HOH HOH . E 3 HOH A 55 1155 71 HOH HOH . E 3 HOH A 56 1156 62 HOH HOH . E 3 HOH A 57 1157 61 HOH HOH . E 3 HOH A 58 1158 48 HOH HOH . E 3 HOH A 59 1159 28 HOH HOH . E 3 HOH A 60 1160 43 HOH HOH . E 3 HOH A 61 1161 68 HOH HOH . E 3 HOH A 62 1162 66 HOH HOH . E 3 HOH A 63 1163 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.978 _atom_site.Cartn_y -2.16 _atom_site.Cartn_z 5.222 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #