data_5VBE # _model_server_result.job_id x_CP7gKA5Edj5wmilGR3Rg _model_server_result.datetime_utc '2024-11-05 03:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5VBE # _exptl.entry_id 5VBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VBE _cell.length_a 92.648 _cell.length_b 92.648 _cell.length_c 120.532 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 22 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 D MG MG . A MG 203 1_555 E O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 D MG MG . A MG 203 1_555 E O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 D MG MG . A MG 203 1_555 E O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc6 D MG MG . A MG 203 1_555 E O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'C15 H16 F3 N3 O2 S' _chem_comp.formula_weight 359.367 _chem_comp.id 92V _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 92V doub 1 n y C10 C11 92V sing 2 n y C13 O12 92V sing 3 n n C21 C22 92V sing 4 n n C21 N20 92V sing 5 n n C22 C23 92V sing 6 n n C01 C02 92V doub 7 n y C01 C05 92V sing 8 n y C01 C18 92V sing 9 n n C02 C14 92V sing 10 n n C02 N03 92V sing 11 n y C05 N04 92V doub 12 n y C06 C07 92V sing 13 n y C06 C11 92V doub 14 n y C06 N03 92V sing 15 n n C07 C08 92V doub 16 n y C08 C09 92V sing 17 n y C09 O12 92V sing 18 n n C14 F15 92V sing 19 n n C14 F16 92V sing 20 n n C14 F17 92V sing 21 n n C18 N20 92V sing 22 n n C18 O19 92V doub 23 n n C23 S24 92V sing 24 n n N03 N04 92V sing 25 n y C10 H101 92V sing 26 n n C13 H132 92V sing 27 n n C13 H131 92V sing 28 n n C13 H133 92V sing 29 n n C21 H212 92V sing 30 n n C21 H211 92V sing 31 n n C22 H221 92V sing 32 n n C22 H222 92V sing 33 n n C05 H051 92V sing 34 n n C07 H071 92V sing 35 n n C08 H081 92V sing 36 n n C11 H111 92V sing 37 n n C23 H232 92V sing 38 n n C23 H231 92V sing 39 n n N20 H201 92V sing 40 n n S24 H1 92V sing 41 n n # _atom_sites.entry_id 5VBE _atom_sites.fract_transf_matrix[1][1] 0.010794 _atom_sites.fract_transf_matrix[1][2] 0.006232 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 203 GDP GDP . C 3 92V A 1 202 251 92V LIG . D 4 MG A 1 203 1 MG MG . E 5 HOH A 1 301 75 HOH HOH . E 5 HOH A 2 302 38 HOH HOH . E 5 HOH A 3 303 124 HOH HOH . E 5 HOH A 4 304 85 HOH HOH . E 5 HOH A 5 305 111 HOH HOH . E 5 HOH A 6 306 72 HOH HOH . E 5 HOH A 7 307 80 HOH HOH . E 5 HOH A 8 308 51 HOH HOH . E 5 HOH A 9 309 53 HOH HOH . E 5 HOH A 10 310 12 HOH HOH . E 5 HOH A 11 311 79 HOH HOH . E 5 HOH A 12 312 44 HOH HOH . E 5 HOH A 13 313 14 HOH HOH . E 5 HOH A 14 314 57 HOH HOH . E 5 HOH A 15 315 54 HOH HOH . E 5 HOH A 16 316 62 HOH HOH . E 5 HOH A 17 317 15 HOH HOH . E 5 HOH A 18 318 73 HOH HOH . E 5 HOH A 19 319 7 HOH HOH . E 5 HOH A 20 320 1 HOH HOH . E 5 HOH A 21 321 20 HOH HOH . E 5 HOH A 22 322 97 HOH HOH . E 5 HOH A 23 323 26 HOH HOH . E 5 HOH A 24 324 34 HOH HOH . E 5 HOH A 25 325 61 HOH HOH . E 5 HOH A 26 326 8 HOH HOH . E 5 HOH A 27 327 10 HOH HOH . E 5 HOH A 28 328 84 HOH HOH . E 5 HOH A 29 329 59 HOH HOH . E 5 HOH A 30 330 40 HOH HOH . E 5 HOH A 31 331 55 HOH HOH . E 5 HOH A 32 332 50 HOH HOH . E 5 HOH A 33 333 56 HOH HOH . E 5 HOH A 34 334 67 HOH HOH . E 5 HOH A 35 335 83 HOH HOH . E 5 HOH A 36 336 103 HOH HOH . E 5 HOH A 37 337 9 HOH HOH . E 5 HOH A 38 338 63 HOH HOH . E 5 HOH A 39 339 74 HOH HOH . E 5 HOH A 40 340 121 HOH HOH . E 5 HOH A 41 341 2 HOH HOH . E 5 HOH A 42 342 70 HOH HOH . E 5 HOH A 43 343 31 HOH HOH . E 5 HOH A 44 344 120 HOH HOH . E 5 HOH A 45 345 16 HOH HOH . E 5 HOH A 46 346 22 HOH HOH . E 5 HOH A 47 347 33 HOH HOH . E 5 HOH A 48 348 45 HOH HOH . E 5 HOH A 49 349 37 HOH HOH . E 5 HOH A 50 350 60 HOH HOH . E 5 HOH A 51 351 90 HOH HOH . E 5 HOH A 52 352 153 HOH HOH . E 5 HOH A 53 353 76 HOH HOH . E 5 HOH A 54 354 3 HOH HOH . E 5 HOH A 55 355 87 HOH HOH . E 5 HOH A 56 356 18 HOH HOH . E 5 HOH A 57 357 42 HOH HOH . E 5 HOH A 58 358 46 HOH HOH . E 5 HOH A 59 359 32 HOH HOH . E 5 HOH A 60 360 4 HOH HOH . E 5 HOH A 61 361 5 HOH HOH . E 5 HOH A 62 362 95 HOH HOH . E 5 HOH A 63 363 36 HOH HOH . E 5 HOH A 64 364 88 HOH HOH . E 5 HOH A 65 365 49 HOH HOH . E 5 HOH A 66 366 64 HOH HOH . E 5 HOH A 67 367 150 HOH HOH . E 5 HOH A 68 368 98 HOH HOH . E 5 HOH A 69 369 164 HOH HOH . E 5 HOH A 70 370 6 HOH HOH . E 5 HOH A 71 371 69 HOH HOH . E 5 HOH A 72 372 92 HOH HOH . E 5 HOH A 73 373 158 HOH HOH . E 5 HOH A 74 374 99 HOH HOH . E 5 HOH A 75 375 27 HOH HOH . E 5 HOH A 76 376 11 HOH HOH . E 5 HOH A 77 377 102 HOH HOH . E 5 HOH A 78 378 108 HOH HOH . E 5 HOH A 79 379 152 HOH HOH . E 5 HOH A 80 380 23 HOH HOH . E 5 HOH A 81 381 58 HOH HOH . E 5 HOH A 82 382 29 HOH HOH . E 5 HOH A 83 383 86 HOH HOH . E 5 HOH A 84 384 82 HOH HOH . E 5 HOH A 85 385 30 HOH HOH . E 5 HOH A 86 386 52 HOH HOH . E 5 HOH A 87 387 35 HOH HOH . E 5 HOH A 88 388 81 HOH HOH . E 5 HOH A 89 389 13 HOH HOH . E 5 HOH A 90 390 96 HOH HOH . E 5 HOH A 91 391 94 HOH HOH . E 5 HOH A 92 392 77 HOH HOH . E 5 HOH A 93 393 71 HOH HOH . E 5 HOH A 94 394 163 HOH HOH . E 5 HOH A 95 395 105 HOH HOH . E 5 HOH A 96 396 66 HOH HOH . E 5 HOH A 97 397 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 92V . . . C 3 -11.384 0.767 -20.818 1 66.3 ? C10 92V 202 A 1 HETATM 2 C C13 92V . . . C 3 -9.568 -1.171 -21.834 1 71.68 ? C13 92V 202 A 1 HETATM 3 C C21 92V . . . C 3 -19.435 5.114 -18.889 1 68.66 ? C21 92V 202 A 1 HETATM 4 C C22 92V . . . C 3 -20.2 4.363 -19.929 1 85.02 ? C22 92V 202 A 1 HETATM 5 C C01 92V . . . C 3 -16.118 3.207 -18.459 1 43.58 ? C01 92V 202 A 1 HETATM 6 C C02 92V . . . C 3 -15.542 2.169 -19.165 1 37.03 ? C02 92V 202 A 1 HETATM 7 C C05 92V . . . C 3 -15.105 3.845 -17.751 1 37.05 ? C05 92V 202 A 1 HETATM 8 C C06 92V . . . C 3 -13.291 1.258 -19.442 1 64.57 ? C06 92V 202 A 1 HETATM 9 C C07 92V . . . C 3 -13.407 -0.086 -19.12 1 60.28 ? C07 92V 202 A 1 HETATM 10 C C08 92V . . . C 3 -12.51 -1.006 -19.644 1 59.76 ? C08 92V 202 A 1 HETATM 11 C C09 92V . . . C 3 -11.492 -0.58 -20.494 1 63.14 ? C09 92V 202 A 1 HETATM 12 C C11 92V . . . C 3 -12.285 1.681 -20.296 1 85.82 ? C11 92V 202 A 1 HETATM 13 C C14 92V . . . C 3 -16.265 1.225 -20.074 1 51.97 ? C14 92V 202 A 1 HETATM 14 C C18 92V . . . C 3 -17.573 3.536 -18.468 1 51.23 ? C18 92V 202 A 1 HETATM 15 C C23 92V . . . C 3 -21.677 4.53 -19.95 1 102.79 ? C23 92V 202 A 1 HETATM 16 F F15 92V . . . C 3 -15.5 0.956 -21.128 1 52.88 ? F15 92V 202 A 1 HETATM 17 F F16 92V . . . C 3 -17.375 1.793 -20.528 1 46.06 ? F16 92V 202 A 1 HETATM 18 F F17 92V . . . C 3 -16.59 0.105 -19.424 1 58.54 ? F17 92V 202 A 1 HETATM 19 N N03 92V . . . C 3 -14.24 2.182 -18.901 1 41.57 ? N03 92V 202 A 1 HETATM 20 N N04 92V . . . C 3 -13.945 3.196 -18.037 1 36.59 ? N04 92V 202 A 1 HETATM 21 N N20 92V . . . C 3 -18.031 4.829 -18.849 1 52.19 ? N20 92V 202 A 1 HETATM 22 O O12 92V . . . C 3 -10.613 -1.513 -21.001 1 69.21 ? O12 92V 202 A 1 HETATM 23 O O19 92V . . . C 3 -18.381 2.662 -18.169 1 59.34 ? O19 92V 202 A 1 HETATM 24 S S24 92V . . . C 3 -22.238 6.146 -20.363 1 81.09 ? S24 92V 202 A 1 HETATM 25 H H101 92V . . . C 3 -10.678 1.067 -21.411 1 79.71 ? H101 92V 202 A 1 HETATM 26 H H132 92V . . . C 3 -8.896 -1.88 -21.823 1 86.17 ? H132 92V 202 A 1 HETATM 27 H H131 92V . . . C 3 -9.165 -0.338 -21.525 1 86.17 ? H131 92V 202 A 1 HETATM 28 H H133 92V . . . C 3 -9.901 -1.053 -22.741 1 86.17 ? H133 92V 202 A 1 HETATM 29 H H212 92V . . . C 3 -19.815 4.906 -18.019 1 82.54 ? H212 92V 202 A 1 HETATM 30 H H211 92V . . . C 3 -19.56 6.062 -19.057 1 82.54 ? H211 92V 202 A 1 HETATM 31 H H221 92V . . . C 3 -20.003 3.416 -19.824 1 102.17 ? H221 92V 202 A 1 HETATM 32 H H222 92V . . . C 3 -19.864 4.644 -20.796 1 102.17 ? H222 92V 202 A 1 HETATM 33 H H051 92V . . . C 3 -15.207 4.604 -17.16 1 44.61 ? H051 92V 202 A 1 HETATM 34 H H071 92V . . . C 3 -14.116 -0.383 -18.528 1 72.49 ? H071 92V 202 A 1 HETATM 35 H H081 92V . . . C 3 -12.588 -1.943 -19.414 1 71.87 ? H081 92V 202 A 1 HETATM 36 H H111 92V . . . C 3 -12.207 2.62 -20.523 1 103.14 ? H111 92V 202 A 1 HETATM 37 H H201 92V . . . C 3 -17.437 5.471 -19.088 1 62.78 ? H201 92V 202 A 1 HETATM 38 H H232 92V . . . C 3 -22.02 4.307 -19.068 1 123.5 ? H232 92V 202 A 1 HETATM 39 H H231 92V . . . C 3 -22.048 3.902 -20.592 1 123.5 ? H231 92V 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #