data_5VBK
#
_model_server_result.job_id            5rqUjbAKFkxSc7OnkuvDDg 
_model_server_result.datetime_utc      '2024-12-18 18:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    5VBK 
#
_exptl.entry_id    5VBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.49 
_cell.angle_gamma         90 
_cell.entry_id            5VBK 
_cell.length_a            81.438 
_cell.length_b            63.69 
_cell.length_c            66.287 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,L 1 1 
B,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5VBK 
_atom_sites.fract_transf_matrix[1][1]    0.012279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007231 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015701 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 4 GOL GOL . 
D 2 GOL A 1 202 5 GOL GOL . 
E 2 GOL A 1 203 7 GOL GOL . 
F 2 GOL A 1 204 8 GOL GOL . 
G 2 GOL B 1 201 1 GOL GOL . 
H 2 GOL B 1 202 2 GOL GOL . 
I 2 GOL B 1 203 3 GOL GOL . 
J 2 GOL B 1 204 6 GOL GOL . 
K 2 GOL B 1 205 9 GOL GOL . 
L 3 HOH A 1 301 139 HOH HOH . 
L 3 HOH A 2 302 137 HOH HOH . 
L 3 HOH A 3 303 166 HOH HOH . 
L 3 HOH A 4 304 180 HOH HOH . 
L 3 HOH A 5 305 86 HOH HOH . 
L 3 HOH A 6 306 63 HOH HOH . 
L 3 HOH A 7 307 203 HOH HOH . 
L 3 HOH A 8 308 22 HOH HOH . 
L 3 HOH A 9 309 191 HOH HOH . 
L 3 HOH A 10 310 19 HOH HOH . 
L 3 HOH A 11 311 77 HOH HOH . 
L 3 HOH A 12 312 49 HOH HOH . 
L 3 HOH A 13 313 161 HOH HOH . 
L 3 HOH A 14 314 120 HOH HOH . 
L 3 HOH A 15 315 24 HOH HOH . 
L 3 HOH A 16 316 38 HOH HOH . 
L 3 HOH A 17 317 17 HOH HOH . 
L 3 HOH A 18 318 6 HOH HOH . 
L 3 HOH A 19 319 118 HOH HOH . 
L 3 HOH A 20 320 155 HOH HOH . 
L 3 HOH A 21 321 202 HOH HOH . 
L 3 HOH A 22 322 27 HOH HOH . 
L 3 HOH A 23 323 113 HOH HOH . 
L 3 HOH A 24 324 149 HOH HOH . 
L 3 HOH A 25 325 160 HOH HOH . 
L 3 HOH A 26 326 208 HOH HOH . 
L 3 HOH A 27 327 210 HOH HOH . 
L 3 HOH A 28 328 75 HOH HOH . 
L 3 HOH A 29 329 55 HOH HOH . 
L 3 HOH A 30 330 36 HOH HOH . 
L 3 HOH A 31 331 53 HOH HOH . 
L 3 HOH A 32 332 94 HOH HOH . 
L 3 HOH A 33 333 21 HOH HOH . 
L 3 HOH A 34 334 138 HOH HOH . 
L 3 HOH A 35 335 101 HOH HOH . 
L 3 HOH A 36 336 109 HOH HOH . 
L 3 HOH A 37 337 46 HOH HOH . 
L 3 HOH A 38 338 196 HOH HOH . 
L 3 HOH A 39 339 35 HOH HOH . 
L 3 HOH A 40 340 85 HOH HOH . 
L 3 HOH A 41 341 117 HOH HOH . 
L 3 HOH A 42 342 182 HOH HOH . 
L 3 HOH A 43 343 124 HOH HOH . 
L 3 HOH A 44 344 110 HOH HOH . 
L 3 HOH A 45 345 193 HOH HOH . 
L 3 HOH A 46 346 141 HOH HOH . 
L 3 HOH A 47 347 199 HOH HOH . 
L 3 HOH A 48 348 172 HOH HOH . 
L 3 HOH A 49 349 152 HOH HOH . 
L 3 HOH A 50 350 47 HOH HOH . 
L 3 HOH A 51 351 9 HOH HOH . 
L 3 HOH A 52 352 11 HOH HOH . 
L 3 HOH A 53 353 171 HOH HOH . 
L 3 HOH A 54 354 214 HOH HOH . 
L 3 HOH A 55 355 168 HOH HOH . 
L 3 HOH A 56 356 127 HOH HOH . 
L 3 HOH A 57 357 10 HOH HOH . 
L 3 HOH A 58 358 68 HOH HOH . 
L 3 HOH A 59 359 103 HOH HOH . 
L 3 HOH A 60 360 164 HOH HOH . 
L 3 HOH A 61 361 167 HOH HOH . 
L 3 HOH A 62 362 105 HOH HOH . 
L 3 HOH A 63 363 207 HOH HOH . 
L 3 HOH A 64 364 211 HOH HOH . 
L 3 HOH A 65 365 189 HOH HOH . 
L 3 HOH A 66 366 108 HOH HOH . 
L 3 HOH A 67 367 60 HOH HOH . 
L 3 HOH A 68 368 41 HOH HOH . 
L 3 HOH A 69 369 147 HOH HOH . 
L 3 HOH A 70 370 123 HOH HOH . 
L 3 HOH A 71 371 122 HOH HOH . 
L 3 HOH A 72 372 181 HOH HOH . 
L 3 HOH A 73 373 23 HOH HOH . 
L 3 HOH A 74 374 56 HOH HOH . 
L 3 HOH A 75 375 212 HOH HOH . 
L 3 HOH A 76 376 156 HOH HOH . 
L 3 HOH A 77 377 170 HOH HOH . 
L 3 HOH A 78 378 64 HOH HOH . 
L 3 HOH A 79 379 158 HOH HOH . 
L 3 HOH A 80 380 183 HOH HOH . 
L 3 HOH A 81 381 206 HOH HOH . 
L 3 HOH A 82 382 148 HOH HOH . 
L 3 HOH A 83 383 66 HOH HOH . 
L 3 HOH A 84 384 173 HOH HOH . 
M 3 HOH B 1 301 150 HOH HOH . 
M 3 HOH B 2 302 201 HOH HOH . 
M 3 HOH B 3 303 187 HOH HOH . 
M 3 HOH B 4 304 198 HOH HOH . 
M 3 HOH B 5 305 184 HOH HOH . 
M 3 HOH B 6 306 106 HOH HOH . 
M 3 HOH B 7 307 13 HOH HOH . 
M 3 HOH B 8 308 178 HOH HOH . 
M 3 HOH B 9 309 74 HOH HOH . 
M 3 HOH B 10 310 72 HOH HOH . 
M 3 HOH B 11 311 2 HOH HOH . 
M 3 HOH B 12 312 5 HOH HOH . 
M 3 HOH B 13 313 71 HOH HOH . 
M 3 HOH B 14 314 195 HOH HOH . 
M 3 HOH B 15 315 28 HOH HOH . 
M 3 HOH B 16 316 125 HOH HOH . 
M 3 HOH B 17 317 78 HOH HOH . 
M 3 HOH B 18 318 65 HOH HOH . 
M 3 HOH B 19 319 140 HOH HOH . 
M 3 HOH B 20 320 25 HOH HOH . 
M 3 HOH B 21 321 3 HOH HOH . 
M 3 HOH B 22 322 73 HOH HOH . 
M 3 HOH B 23 323 192 HOH HOH . 
M 3 HOH B 24 324 87 HOH HOH . 
M 3 HOH B 25 325 154 HOH HOH . 
M 3 HOH B 26 326 34 HOH HOH . 
M 3 HOH B 27 327 116 HOH HOH . 
M 3 HOH B 28 328 42 HOH HOH . 
M 3 HOH B 29 329 92 HOH HOH . 
M 3 HOH B 30 330 7 HOH HOH . 
M 3 HOH B 31 331 197 HOH HOH . 
M 3 HOH B 32 332 107 HOH HOH . 
M 3 HOH B 33 333 90 HOH HOH . 
M 3 HOH B 34 334 130 HOH HOH . 
M 3 HOH B 35 335 39 HOH HOH . 
M 3 HOH B 36 336 20 HOH HOH . 
M 3 HOH B 37 337 33 HOH HOH . 
M 3 HOH B 38 338 179 HOH HOH . 
M 3 HOH B 39 339 84 HOH HOH . 
M 3 HOH B 40 340 8 HOH HOH . 
M 3 HOH B 41 341 145 HOH HOH . 
M 3 HOH B 42 342 174 HOH HOH . 
M 3 HOH B 43 343 57 HOH HOH . 
M 3 HOH B 44 344 4 HOH HOH . 
M 3 HOH B 45 345 162 HOH HOH . 
M 3 HOH B 46 346 40 HOH HOH . 
M 3 HOH B 47 347 128 HOH HOH . 
M 3 HOH B 48 348 83 HOH HOH . 
M 3 HOH B 49 349 1 HOH HOH . 
M 3 HOH B 50 350 98 HOH HOH . 
M 3 HOH B 51 351 169 HOH HOH . 
M 3 HOH B 52 352 70 HOH HOH . 
M 3 HOH B 53 353 136 HOH HOH . 
M 3 HOH B 54 354 14 HOH HOH . 
M 3 HOH B 55 355 58 HOH HOH . 
M 3 HOH B 56 356 44 HOH HOH . 
M 3 HOH B 57 357 79 HOH HOH . 
M 3 HOH B 58 358 126 HOH HOH . 
M 3 HOH B 59 359 26 HOH HOH . 
M 3 HOH B 60 360 177 HOH HOH . 
M 3 HOH B 61 361 134 HOH HOH . 
M 3 HOH B 62 362 146 HOH HOH . 
M 3 HOH B 63 363 102 HOH HOH . 
M 3 HOH B 64 364 69 HOH HOH . 
M 3 HOH B 65 365 190 HOH HOH . 
M 3 HOH B 66 366 52 HOH HOH . 
M 3 HOH B 67 367 45 HOH HOH . 
M 3 HOH B 68 368 209 HOH HOH . 
M 3 HOH B 69 369 132 HOH HOH . 
M 3 HOH B 70 370 88 HOH HOH . 
M 3 HOH B 71 371 67 HOH HOH . 
M 3 HOH B 72 372 165 HOH HOH . 
M 3 HOH B 73 373 29 HOH HOH . 
M 3 HOH B 74 374 76 HOH HOH . 
M 3 HOH B 75 375 163 HOH HOH . 
M 3 HOH B 76 376 62 HOH HOH . 
M 3 HOH B 77 377 37 HOH HOH . 
M 3 HOH B 78 378 95 HOH HOH . 
M 3 HOH B 79 379 104 HOH HOH . 
M 3 HOH B 80 380 135 HOH HOH . 
M 3 HOH B 81 381 18 HOH HOH . 
M 3 HOH B 82 382 15 HOH HOH . 
M 3 HOH B 83 383 43 HOH HOH . 
M 3 HOH B 84 384 99 HOH HOH . 
M 3 HOH B 85 385 194 HOH HOH . 
M 3 HOH B 86 386 61 HOH HOH . 
M 3 HOH B 87 387 176 HOH HOH . 
M 3 HOH B 88 388 97 HOH HOH . 
M 3 HOH B 89 389 30 HOH HOH . 
M 3 HOH B 90 390 144 HOH HOH . 
M 3 HOH B 91 391 151 HOH HOH . 
M 3 HOH B 92 392 54 HOH HOH . 
M 3 HOH B 93 393 31 HOH HOH . 
M 3 HOH B 94 394 111 HOH HOH . 
M 3 HOH B 95 395 12 HOH HOH . 
M 3 HOH B 96 396 186 HOH HOH . 
M 3 HOH B 97 397 119 HOH HOH . 
M 3 HOH B 98 398 16 HOH HOH . 
M 3 HOH B 99 399 112 HOH HOH . 
M 3 HOH B 100 400 51 HOH HOH . 
M 3 HOH B 101 401 59 HOH HOH . 
M 3 HOH B 102 402 48 HOH HOH . 
M 3 HOH B 103 403 32 HOH HOH . 
M 3 HOH B 104 404 93 HOH HOH . 
M 3 HOH B 105 405 91 HOH HOH . 
M 3 HOH B 106 406 115 HOH HOH . 
M 3 HOH B 107 407 175 HOH HOH . 
M 3 HOH B 108 408 200 HOH HOH . 
M 3 HOH B 109 409 185 HOH HOH . 
M 3 HOH B 110 410 153 HOH HOH . 
M 3 HOH B 111 411 114 HOH HOH . 
M 3 HOH B 112 412 157 HOH HOH . 
M 3 HOH B 113 413 142 HOH HOH . 
M 3 HOH B 114 414 100 HOH HOH . 
M 3 HOH B 115 415 213 HOH HOH . 
M 3 HOH B 116 416 205 HOH HOH . 
M 3 HOH B 117 417 204 HOH HOH . 
M 3 HOH B 118 418 131 HOH HOH . 
M 3 HOH B 119 419 96 HOH HOH . 
M 3 HOH B 120 420 81 HOH HOH . 
M 3 HOH B 121 421 80 HOH HOH . 
M 3 HOH B 122 422 159 HOH HOH . 
M 3 HOH B 123 423 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 21.645 43.847 -11.893 1 25.66 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . E 2 21.989 42.759 -12.741 1 29.04 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . E 2 21.185 44.993 -12.786 1 29.38 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . E 2 20.284 44.47 -13.749 1 36.4 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . E 2 20.456 46.037 -11.96 1 26.41 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . E 2 20.025 47.116 -12.795 1 25.38 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           455 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#