data_5VBM # _model_server_result.job_id M8LCKtqlyToWqHv-zjE9Ow _model_server_result.datetime_utc '2024-11-05 06:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5VBM # _exptl.entry_id 5VBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.367 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VBM _cell.length_a 32.6 _cell.length_b 41.18 _cell.length_c 111.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 72 1_555 D S24 92V . A 92V 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 B MG MG . A MG 201 1_555 C O3B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 B MG MG . A MG 201 1_555 E O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 B MG MG . A MG 201 1_555 E O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 B MG MG . A MG 201 1_555 E O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 B MG MG . A MG 201 1_555 E O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C15 H16 F3 N3 O2 S' _chem_comp.formula_weight 359.367 _chem_comp.id 92V _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 92V doub 1 n y C10 C11 92V sing 2 n y C13 O12 92V sing 3 n n C21 C22 92V sing 4 n n C21 N20 92V sing 5 n n C22 C23 92V sing 6 n n C01 C02 92V doub 7 n y C01 C05 92V sing 8 n y C01 C18 92V sing 9 n n C02 C14 92V sing 10 n n C02 N03 92V sing 11 n y C05 N04 92V doub 12 n y C06 C07 92V sing 13 n y C06 C11 92V doub 14 n y C06 N03 92V sing 15 n n C07 C08 92V doub 16 n y C08 C09 92V sing 17 n y C09 O12 92V sing 18 n n C14 F15 92V sing 19 n n C14 F16 92V sing 20 n n C14 F17 92V sing 21 n n C18 N20 92V sing 22 n n C18 O19 92V doub 23 n n C23 S24 92V sing 24 n n N03 N04 92V sing 25 n y C10 H101 92V sing 26 n n C13 H132 92V sing 27 n n C13 H131 92V sing 28 n n C13 H133 92V sing 29 n n C21 H212 92V sing 30 n n C21 H211 92V sing 31 n n C22 H221 92V sing 32 n n C22 H222 92V sing 33 n n C05 H051 92V sing 34 n n C07 H071 92V sing 35 n n C08 H081 92V sing 36 n n C11 H111 92V sing 37 n n C23 H232 92V sing 38 n n C23 H231 92V sing 39 n n N20 H201 92V sing 40 n n S24 H1 92V sing 41 n n # _atom_sites.entry_id 5VBM _atom_sites.fract_transf_matrix[1][1] 0.030675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 200 MG MG . C 3 GDP A 1 202 203 GDP GDP . D 4 92V A 1 203 251 92V LIG . E 5 HOH A 1 301 256 HOH HOH . E 5 HOH A 2 302 79 HOH HOH . E 5 HOH A 3 303 49 HOH HOH . E 5 HOH A 4 304 17 HOH HOH . E 5 HOH A 5 305 53 HOH HOH . E 5 HOH A 6 306 85 HOH HOH . E 5 HOH A 7 307 94 HOH HOH . E 5 HOH A 8 308 65 HOH HOH . E 5 HOH A 9 309 35 HOH HOH . E 5 HOH A 10 310 88 HOH HOH . E 5 HOH A 11 311 23 HOH HOH . E 5 HOH A 12 312 250 HOH HOH . E 5 HOH A 13 313 109 HOH HOH . E 5 HOH A 14 314 50 HOH HOH . E 5 HOH A 15 315 51 HOH HOH . E 5 HOH A 16 316 73 HOH HOH . E 5 HOH A 17 317 1 HOH HOH . E 5 HOH A 18 318 63 HOH HOH . E 5 HOH A 19 319 37 HOH HOH . E 5 HOH A 20 320 8 HOH HOH . E 5 HOH A 21 321 52 HOH HOH . E 5 HOH A 22 322 2 HOH HOH . E 5 HOH A 23 323 6 HOH HOH . E 5 HOH A 24 324 75 HOH HOH . E 5 HOH A 25 325 116 HOH HOH . E 5 HOH A 26 326 48 HOH HOH . E 5 HOH A 27 327 93 HOH HOH . E 5 HOH A 28 328 30 HOH HOH . E 5 HOH A 29 329 128 HOH HOH . E 5 HOH A 30 330 36 HOH HOH . E 5 HOH A 31 331 58 HOH HOH . E 5 HOH A 32 332 74 HOH HOH . E 5 HOH A 33 333 19 HOH HOH . E 5 HOH A 34 334 12 HOH HOH . E 5 HOH A 35 335 78 HOH HOH . E 5 HOH A 36 336 110 HOH HOH . E 5 HOH A 37 337 87 HOH HOH . E 5 HOH A 38 338 99 HOH HOH . E 5 HOH A 39 339 9 HOH HOH . E 5 HOH A 40 340 4 HOH HOH . E 5 HOH A 41 341 26 HOH HOH . E 5 HOH A 42 342 14 HOH HOH . E 5 HOH A 43 343 96 HOH HOH . E 5 HOH A 44 344 13 HOH HOH . E 5 HOH A 45 345 11 HOH HOH . E 5 HOH A 46 346 5 HOH HOH . E 5 HOH A 47 347 90 HOH HOH . E 5 HOH A 48 348 42 HOH HOH . E 5 HOH A 49 349 45 HOH HOH . E 5 HOH A 50 350 29 HOH HOH . E 5 HOH A 51 351 248 HOH HOH . E 5 HOH A 52 352 70 HOH HOH . E 5 HOH A 53 353 118 HOH HOH . E 5 HOH A 54 354 3 HOH HOH . E 5 HOH A 55 355 253 HOH HOH . E 5 HOH A 56 356 72 HOH HOH . E 5 HOH A 57 357 31 HOH HOH . E 5 HOH A 58 358 68 HOH HOH . E 5 HOH A 59 359 15 HOH HOH . E 5 HOH A 60 360 81 HOH HOH . E 5 HOH A 61 361 113 HOH HOH . E 5 HOH A 62 362 124 HOH HOH . E 5 HOH A 63 363 41 HOH HOH . E 5 HOH A 64 364 84 HOH HOH . E 5 HOH A 65 365 62 HOH HOH . E 5 HOH A 66 366 21 HOH HOH . E 5 HOH A 67 367 82 HOH HOH . E 5 HOH A 68 368 32 HOH HOH . E 5 HOH A 69 369 7 HOH HOH . E 5 HOH A 70 370 125 HOH HOH . E 5 HOH A 71 371 77 HOH HOH . E 5 HOH A 72 372 64 HOH HOH . E 5 HOH A 73 373 131 HOH HOH . E 5 HOH A 74 374 16 HOH HOH . E 5 HOH A 75 375 39 HOH HOH . E 5 HOH A 76 376 251 HOH HOH . E 5 HOH A 77 377 24 HOH HOH . E 5 HOH A 78 378 80 HOH HOH . E 5 HOH A 79 379 60 HOH HOH . E 5 HOH A 80 380 55 HOH HOH . E 5 HOH A 81 381 27 HOH HOH . E 5 HOH A 82 382 28 HOH HOH . E 5 HOH A 83 383 243 HOH HOH . E 5 HOH A 84 384 34 HOH HOH . E 5 HOH A 85 385 111 HOH HOH . E 5 HOH A 86 386 83 HOH HOH . E 5 HOH A 87 387 33 HOH HOH . E 5 HOH A 88 388 25 HOH HOH . E 5 HOH A 89 389 71 HOH HOH . E 5 HOH A 90 390 20 HOH HOH . E 5 HOH A 91 391 40 HOH HOH . E 5 HOH A 92 392 38 HOH HOH . E 5 HOH A 93 393 10 HOH HOH . E 5 HOH A 94 394 69 HOH HOH . E 5 HOH A 95 395 115 HOH HOH . E 5 HOH A 96 396 89 HOH HOH . E 5 HOH A 97 397 54 HOH HOH . E 5 HOH A 98 398 92 HOH HOH . E 5 HOH A 99 399 114 HOH HOH . E 5 HOH A 100 400 137 HOH HOH . E 5 HOH A 101 401 107 HOH HOH . E 5 HOH A 102 402 76 HOH HOH . E 5 HOH A 103 403 46 HOH HOH . E 5 HOH A 104 404 252 HOH HOH . E 5 HOH A 105 405 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 92V . . . D 4 5.681 6.839 11.647 1 16.14 ? C10 92V 203 A 1 HETATM 2 C C13 92V . . . D 4 6.936 8.149 9.504 1 24.3 ? C13 92V 203 A 1 HETATM 3 C C21 92V . . . D 4 2.291 0.347 17.51 1 41.07 ? C21 92V 203 A 1 HETATM 4 C C22 92V . . . D 4 1.97 -0.529 16.333 1 44.07 ? C22 92V 203 A 1 HETATM 5 C C01 92V . . . D 4 4.544 2.998 15.933 1 18.17 ? C01 92V 203 A 1 HETATM 6 C C02 92V . . . D 4 4.885 3.156 14.589 1 16.22 ? C02 92V 203 A 1 HETATM 7 C C05 92V . . . D 4 4.759 4.228 16.562 1 22.02 ? C05 92V 203 A 1 HETATM 8 C C06 92V . . . D 4 5.755 5.073 13.263 1 16.65 ? C06 92V 203 A 1 HETATM 9 C C07 92V . . . D 4 6.887 4.558 12.658 1 15.45 ? C07 92V 203 A 1 HETATM 10 C C08 92V . . . D 4 7.414 5.162 11.535 1 18.98 ? C08 92V 203 A 1 HETATM 11 C C09 92V . . . D 4 6.817 6.303 11.035 1 16.08 ? C09 92V 203 A 1 HETATM 12 C C11 92V . . . D 4 5.14 6.222 12.771 1 16.49 ? C11 92V 203 A 1 HETATM 13 C C14 92V . . . D 4 4.812 2.13 13.492 1 18.17 ? C14 92V 203 A 1 HETATM 14 C C18 92V . . . D 4 4.042 1.727 16.526 1 18.18 ? C18 92V 203 A 1 HETATM 15 C C23 92V . . . D 4 2.091 -2.011 16.414 1 34.51 ? C23 92V 203 A 1 HETATM 16 F F15 92V . . . D 4 4.352 2.697 12.388 1 17.16 ? F15 92V 203 A 1 HETATM 17 F F16 92V . . . D 4 4.003 1.128 13.799 1 16.57 ? F16 92V 203 A 1 HETATM 18 F F17 92V . . . D 4 6.023 1.607 13.258 1 18.36 ? F17 92V 203 A 1 HETATM 19 N N03 92V . . . D 4 5.28 4.422 14.439 1 18.78 ? N03 92V 203 A 1 HETATM 20 N N04 92V . . . D 4 5.233 5.093 15.624 1 21.26 ? N04 92V 203 A 1 HETATM 21 N N20 92V . . . D 4 2.726 1.642 17.07 1 21.82 ? N20 92V 203 A 1 HETATM 22 O O12 92V . . . D 4 7.352 6.895 9.91 1 21.21 ? O12 92V 203 A 1 HETATM 23 O O19 92V . . . D 4 4.735 0.718 16.505 1 20.16 ? O19 92V 203 A 1 HETATM 24 S S24 92V . . . D 4 0.818 -2.821 17.31 1 24.9 ? S24 92V 203 A 1 HETATM 25 H H101 92V . . . D 4 5.263 7.634 11.281 1 19.37 ? H101 92V 203 A 1 HETATM 26 H H132 92V . . . D 4 6.09 8.071 9.022 1 29.16 ? H132 92V 203 A 1 HETATM 27 H H131 92V . . . D 4 7.609 8.541 8.918 1 29.16 ? H131 92V 203 A 1 HETATM 28 H H133 92V . . . D 4 6.814 8.719 10.285 1 29.16 ? H133 92V 203 A 1 HETATM 29 H H212 92V . . . D 4 3 -0.065 18.031 1 49.28 ? H212 92V 203 A 1 HETATM 30 H H211 92V . . . D 4 1.497 0.429 18.063 1 49.28 ? H211 92V 203 A 1 HETATM 31 H H221 92V . . . D 4 2.543 -0.24 15.602 1 52.88 ? H221 92V 203 A 1 HETATM 32 H H222 92V . . . D 4 1.054 -0.333 16.076 1 52.88 ? H222 92V 203 A 1 HETATM 33 H H051 92V . . . D 4 4.62 4.423 17.5 1 26.43 ? H051 92V 203 A 1 HETATM 34 H H071 92V . . . D 4 7.307 3.761 13.019 1 18.54 ? H071 92V 203 A 1 HETATM 35 H H081 92V . . . D 4 8.202 4.795 11.107 1 22.78 ? H081 92V 203 A 1 HETATM 36 H H111 92V . . . D 4 4.359 6.591 13.21 1 19.79 ? H111 92V 203 A 1 HETATM 37 H H201 92V . . . D 4 2.159 2.35 17.059 1 26.18 ? H201 92V 203 A 1 HETATM 38 H H232 92V . . . D 4 2.941 -2.225 16.833 1 41.41 ? H232 92V 203 A 1 HETATM 39 H H231 92V . . . D 4 2.098 -2.365 15.508 1 41.41 ? H231 92V 203 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #