data_5VBN
#
_model_server_result.job_id            08bJKkNoxntuZ84s4ZH6wA 
_model_server_result.datetime_utc      '2024-11-26 06:34:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2302}' 
#
_entry.id    5VBN 
#
_exptl.entry_id    5VBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VBN 
_cell.length_a            92.26 
_cell.length_b            201.459 
_cell.length_c            78.336 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 17 B CYS 2158 1_555 F ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc2 B SG CYS 20 B CYS 2161 1_555 F ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 B SG CYS 46 B CYS 2187 1_555 F ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 B SG CYS 49 B CYS 2190 1_555 F ZN ZN . B ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc5 B SG CYS 80 B CYS 2221 1_555 G ZN ZN . B ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 B SG CYS 83 B CYS 2224 1_555 G ZN ZN . B ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc7 B SG CYS 95 B CYS 2236 1_555 G ZN ZN . B ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 B SG CYS 97 B CYS 2238 1_555 G ZN ZN . B ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc9 D SG CYS 17 F CYS 2158 1_555 I ZN ZN . F ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc10 D SG CYS 20 F CYS 2161 1_555 I ZN ZN . F ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc11 D SG CYS 46 F CYS 2187 1_555 I ZN ZN . F ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc12 D SG CYS 49 F CYS 2190 1_555 I ZN ZN . F ZN 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc13 D SG CYS 80 F CYS 2221 1_555 J ZN ZN . F ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc14 D SG CYS 83 F CYS 2224 1_555 J ZN ZN . F ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc15 D SG CYS 95 F CYS 2236 1_555 J ZN ZN . F ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc16 D SG CYS 97 F CYS 2238 1_555 J ZN ZN . F ZN 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VBN 
_atom_sites.fract_transf_matrix[1][1]    0.010839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012766 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 601 101 SO4 SO4 . 
F 4 ZN B 1 2301 101 ZN ZN2 . 
G 4 ZN B 1 2302 201 ZN ZN2 . 
H 3 SO4 E 1 601 101 SO4 SO4 . 
I 4 ZN F 1 2301 101 ZN ZN2 . 
J 4 ZN F 1 2302 201 ZN ZN2 . 
K 5 HOH A 1 701 56 HOH HOH . 
K 5 HOH A 2 702 131 HOH HOH . 
K 5 HOH A 3 703 34 HOH HOH . 
K 5 HOH A 4 704 7 HOH HOH . 
K 5 HOH A 5 705 4 HOH HOH . 
K 5 HOH A 6 706 149 HOH HOH . 
K 5 HOH A 7 707 146 HOH HOH . 
K 5 HOH A 8 708 45 HOH HOH . 
K 5 HOH A 9 709 75 HOH HOH . 
K 5 HOH A 10 710 87 HOH HOH . 
K 5 HOH A 11 711 105 HOH HOH . 
K 5 HOH A 12 712 9 HOH HOH . 
K 5 HOH A 13 713 115 HOH HOH . 
K 5 HOH A 14 714 22 HOH HOH . 
K 5 HOH A 15 715 156 HOH HOH . 
K 5 HOH A 16 716 42 HOH HOH . 
K 5 HOH A 17 717 16 HOH HOH . 
K 5 HOH A 18 718 194 HOH HOH . 
K 5 HOH A 19 719 141 HOH HOH . 
K 5 HOH A 20 720 180 HOH HOH . 
K 5 HOH A 21 721 21 HOH HOH . 
K 5 HOH A 22 722 127 HOH HOH . 
K 5 HOH A 23 723 63 HOH HOH . 
K 5 HOH A 24 724 73 HOH HOH . 
K 5 HOH A 25 725 1 HOH HOH . 
K 5 HOH A 26 726 13 HOH HOH . 
K 5 HOH A 27 727 110 HOH HOH . 
K 5 HOH A 28 728 103 HOH HOH . 
K 5 HOH A 29 729 41 HOH HOH . 
K 5 HOH A 30 730 192 HOH HOH . 
K 5 HOH A 31 731 193 HOH HOH . 
K 5 HOH A 32 732 19 HOH HOH . 
K 5 HOH A 33 733 11 HOH HOH . 
K 5 HOH A 34 734 90 HOH HOH . 
K 5 HOH A 35 735 24 HOH HOH . 
K 5 HOH A 36 736 61 HOH HOH . 
K 5 HOH A 37 737 196 HOH HOH . 
K 5 HOH A 38 738 81 HOH HOH . 
K 5 HOH A 39 739 187 HOH HOH . 
K 5 HOH A 40 740 117 HOH HOH . 
K 5 HOH A 41 741 160 HOH HOH . 
K 5 HOH A 42 742 35 HOH HOH . 
K 5 HOH A 43 743 150 HOH HOH . 
K 5 HOH A 44 744 130 HOH HOH . 
K 5 HOH A 45 745 92 HOH HOH . 
K 5 HOH A 46 746 6 HOH HOH . 
K 5 HOH A 47 747 57 HOH HOH . 
K 5 HOH A 48 748 121 HOH HOH . 
K 5 HOH A 49 749 96 HOH HOH . 
K 5 HOH A 50 750 209 HOH HOH . 
K 5 HOH A 51 751 99 HOH HOH . 
K 5 HOH A 52 752 38 HOH HOH . 
K 5 HOH A 53 753 167 HOH HOH . 
K 5 HOH A 54 754 33 HOH HOH . 
K 5 HOH A 55 755 199 HOH HOH . 
K 5 HOH A 56 756 98 HOH HOH . 
K 5 HOH A 57 757 112 HOH HOH . 
K 5 HOH A 58 758 116 HOH HOH . 
K 5 HOH A 59 759 74 HOH HOH . 
K 5 HOH A 60 760 165 HOH HOH . 
K 5 HOH A 61 761 15 HOH HOH . 
K 5 HOH A 62 762 43 HOH HOH . 
K 5 HOH A 63 763 69 HOH HOH . 
K 5 HOH A 64 764 155 HOH HOH . 
K 5 HOH A 65 765 10 HOH HOH . 
K 5 HOH A 66 766 53 HOH HOH . 
K 5 HOH A 67 767 133 HOH HOH . 
K 5 HOH A 68 768 207 HOH HOH . 
K 5 HOH A 69 769 123 HOH HOH . 
K 5 HOH A 70 770 64 HOH HOH . 
K 5 HOH A 71 771 157 HOH HOH . 
K 5 HOH A 72 772 84 HOH HOH . 
K 5 HOH A 73 773 162 HOH HOH . 
K 5 HOH A 74 774 76 HOH HOH . 
K 5 HOH A 75 775 175 HOH HOH . 
K 5 HOH A 76 776 122 HOH HOH . 
K 5 HOH A 77 777 80 HOH HOH . 
K 5 HOH A 78 778 134 HOH HOH . 
K 5 HOH A 79 779 91 HOH HOH . 
K 5 HOH A 80 780 188 HOH HOH . 
K 5 HOH A 81 781 120 HOH HOH . 
K 5 HOH A 82 782 5 HOH HOH . 
K 5 HOH A 83 783 164 HOH HOH . 
K 5 HOH A 84 784 100 HOH HOH . 
K 5 HOH A 85 785 173 HOH HOH . 
K 5 HOH A 86 786 59 HOH HOH . 
K 5 HOH A 87 787 111 HOH HOH . 
K 5 HOH A 88 788 185 HOH HOH . 
K 5 HOH A 89 789 79 HOH HOH . 
K 5 HOH A 90 790 140 HOH HOH . 
K 5 HOH A 91 791 26 HOH HOH . 
K 5 HOH A 92 792 95 HOH HOH . 
K 5 HOH A 93 793 113 HOH HOH . 
K 5 HOH A 94 794 128 HOH HOH . 
K 5 HOH A 95 795 139 HOH HOH . 
K 5 HOH A 96 796 212 HOH HOH . 
K 5 HOH A 97 797 195 HOH HOH . 
K 5 HOH A 98 798 208 HOH HOH . 
K 5 HOH A 99 799 191 HOH HOH . 
K 5 HOH A 100 800 62 HOH HOH . 
K 5 HOH A 101 801 97 HOH HOH . 
K 5 HOH A 102 802 119 HOH HOH . 
K 5 HOH A 103 803 174 HOH HOH . 
K 5 HOH A 104 804 152 HOH HOH . 
K 5 HOH A 105 805 200 HOH HOH . 
K 5 HOH A 106 806 153 HOH HOH . 
K 5 HOH A 107 807 102 HOH HOH . 
K 5 HOH A 108 808 132 HOH HOH . 
L 5 HOH B 1 2401 107 HOH HOH . 
L 5 HOH B 2 2402 55 HOH HOH . 
L 5 HOH B 3 2403 158 HOH HOH . 
L 5 HOH B 4 2404 211 HOH HOH . 
L 5 HOH B 5 2405 206 HOH HOH . 
L 5 HOH B 6 2406 82 HOH HOH . 
M 5 HOH E 1 701 51 HOH HOH . 
M 5 HOH E 2 702 18 HOH HOH . 
M 5 HOH E 3 703 20 HOH HOH . 
M 5 HOH E 4 704 50 HOH HOH . 
M 5 HOH E 5 705 148 HOH HOH . 
M 5 HOH E 6 706 106 HOH HOH . 
M 5 HOH E 7 707 70 HOH HOH . 
M 5 HOH E 8 708 30 HOH HOH . 
M 5 HOH E 9 709 143 HOH HOH . 
M 5 HOH E 10 710 3 HOH HOH . 
M 5 HOH E 11 711 126 HOH HOH . 
M 5 HOH E 12 712 27 HOH HOH . 
M 5 HOH E 13 713 14 HOH HOH . 
M 5 HOH E 14 714 183 HOH HOH . 
M 5 HOH E 15 715 65 HOH HOH . 
M 5 HOH E 16 716 8 HOH HOH . 
M 5 HOH E 17 717 52 HOH HOH . 
M 5 HOH E 18 718 124 HOH HOH . 
M 5 HOH E 19 719 12 HOH HOH . 
M 5 HOH E 20 720 163 HOH HOH . 
M 5 HOH E 21 721 83 HOH HOH . 
M 5 HOH E 22 722 49 HOH HOH . 
M 5 HOH E 23 723 68 HOH HOH . 
M 5 HOH E 24 724 184 HOH HOH . 
M 5 HOH E 25 725 31 HOH HOH . 
M 5 HOH E 26 726 40 HOH HOH . 
M 5 HOH E 27 727 108 HOH HOH . 
M 5 HOH E 28 728 89 HOH HOH . 
M 5 HOH E 29 729 78 HOH HOH . 
M 5 HOH E 30 730 39 HOH HOH . 
M 5 HOH E 31 731 88 HOH HOH . 
M 5 HOH E 32 732 138 HOH HOH . 
M 5 HOH E 33 733 93 HOH HOH . 
M 5 HOH E 34 734 151 HOH HOH . 
M 5 HOH E 35 735 47 HOH HOH . 
M 5 HOH E 36 736 32 HOH HOH . 
M 5 HOH E 37 737 85 HOH HOH . 
M 5 HOH E 38 738 182 HOH HOH . 
M 5 HOH E 39 739 142 HOH HOH . 
M 5 HOH E 40 740 161 HOH HOH . 
M 5 HOH E 41 741 71 HOH HOH . 
M 5 HOH E 42 742 109 HOH HOH . 
M 5 HOH E 43 743 203 HOH HOH . 
M 5 HOH E 44 744 159 HOH HOH . 
M 5 HOH E 45 745 36 HOH HOH . 
M 5 HOH E 46 746 154 HOH HOH . 
M 5 HOH E 47 747 118 HOH HOH . 
M 5 HOH E 48 748 72 HOH HOH . 
M 5 HOH E 49 749 129 HOH HOH . 
M 5 HOH E 50 750 176 HOH HOH . 
M 5 HOH E 51 751 178 HOH HOH . 
M 5 HOH E 52 752 136 HOH HOH . 
M 5 HOH E 53 753 168 HOH HOH . 
M 5 HOH E 54 754 170 HOH HOH . 
M 5 HOH E 55 755 54 HOH HOH . 
M 5 HOH E 56 756 172 HOH HOH . 
M 5 HOH E 57 757 17 HOH HOH . 
M 5 HOH E 58 758 94 HOH HOH . 
M 5 HOH E 59 759 46 HOH HOH . 
M 5 HOH E 60 760 58 HOH HOH . 
M 5 HOH E 61 761 177 HOH HOH . 
M 5 HOH E 62 762 66 HOH HOH . 
M 5 HOH E 63 763 198 HOH HOH . 
M 5 HOH E 64 764 204 HOH HOH . 
M 5 HOH E 65 765 2 HOH HOH . 
M 5 HOH E 66 766 86 HOH HOH . 
M 5 HOH E 67 767 25 HOH HOH . 
M 5 HOH E 68 768 181 HOH HOH . 
M 5 HOH E 69 769 23 HOH HOH . 
M 5 HOH E 70 770 44 HOH HOH . 
M 5 HOH E 71 771 28 HOH HOH . 
M 5 HOH E 72 772 189 HOH HOH . 
M 5 HOH E 73 773 205 HOH HOH . 
M 5 HOH E 74 774 77 HOH HOH . 
M 5 HOH E 75 775 179 HOH HOH . 
M 5 HOH E 76 776 145 HOH HOH . 
M 5 HOH E 77 777 202 HOH HOH . 
M 5 HOH E 78 778 137 HOH HOH . 
M 5 HOH E 79 779 48 HOH HOH . 
M 5 HOH E 80 780 186 HOH HOH . 
M 5 HOH E 81 781 104 HOH HOH . 
M 5 HOH E 82 782 37 HOH HOH . 
M 5 HOH E 83 783 67 HOH HOH . 
M 5 HOH E 84 784 125 HOH HOH . 
M 5 HOH E 85 785 201 HOH HOH . 
M 5 HOH E 86 786 29 HOH HOH . 
M 5 HOH E 87 787 114 HOH HOH . 
M 5 HOH E 88 788 197 HOH HOH . 
M 5 HOH E 89 789 190 HOH HOH . 
M 5 HOH E 90 790 144 HOH HOH . 
M 5 HOH E 91 791 101 HOH HOH . 
M 5 HOH E 92 792 147 HOH HOH . 
M 5 HOH E 93 793 171 HOH HOH . 
M 5 HOH E 94 794 210 HOH HOH . 
N 5 HOH F 1 2401 60 HOH HOH . 
N 5 HOH F 2 2402 166 HOH HOH . 
N 5 HOH F 3 2403 135 HOH HOH . 
N 5 HOH F 4 2404 169 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               97.778 
_atom_site.Cartn_y               50.608 
_atom_site.Cartn_z               41.855 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        66.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           2302 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#