data_5VBO # _model_server_result.job_id H1vwBBdEpxvyrJ7bWXi0nQ _model_server_result.datetime_utc '2024-11-23 02:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5VBO # _exptl.entry_id 5VBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VBO _cell.length_a 38.81 _cell.length_b 50.9 _cell.length_c 57.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 168 n n C1 C2 EDO sing 169 n n C1 H11 EDO sing 170 n n C1 H12 EDO sing 171 n n O1 HO1 EDO sing 172 n n C2 O2 EDO sing 173 n n C2 H21 EDO sing 174 n n C2 H22 EDO sing 175 n n O2 HO2 EDO sing 176 n n # _atom_sites.entry_id 5VBO _atom_sites.fract_transf_matrix[1][1] 0.025767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4K4 A 1 201 1 4K4 LIG . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 4 EDO A 1 204 1 EDO EDO . F 4 EDO A 1 205 2 EDO EDO . G 4 EDO A 1 206 3 EDO EDO . H 4 EDO A 1 207 4 EDO EDO . I 4 EDO A 1 208 5 EDO EDO . J 5 HOH A 1 301 126 HOH HOH . J 5 HOH A 2 302 23 HOH HOH . J 5 HOH A 3 303 117 HOH HOH . J 5 HOH A 4 304 93 HOH HOH . J 5 HOH A 5 305 97 HOH HOH . J 5 HOH A 6 306 57 HOH HOH . J 5 HOH A 7 307 104 HOH HOH . J 5 HOH A 8 308 17 HOH HOH . J 5 HOH A 9 309 49 HOH HOH . J 5 HOH A 10 310 124 HOH HOH . J 5 HOH A 11 311 116 HOH HOH . J 5 HOH A 12 312 18 HOH HOH . J 5 HOH A 13 313 69 HOH HOH . J 5 HOH A 14 314 95 HOH HOH . J 5 HOH A 15 315 43 HOH HOH . J 5 HOH A 16 316 41 HOH HOH . J 5 HOH A 17 317 70 HOH HOH . J 5 HOH A 18 318 82 HOH HOH . J 5 HOH A 19 319 62 HOH HOH . J 5 HOH A 20 320 66 HOH HOH . J 5 HOH A 21 321 84 HOH HOH . J 5 HOH A 22 322 28 HOH HOH . J 5 HOH A 23 323 1 HOH HOH . J 5 HOH A 24 324 16 HOH HOH . J 5 HOH A 25 325 80 HOH HOH . J 5 HOH A 26 326 121 HOH HOH . J 5 HOH A 27 327 32 HOH HOH . J 5 HOH A 28 328 65 HOH HOH . J 5 HOH A 29 329 88 HOH HOH . J 5 HOH A 30 330 11 HOH HOH . J 5 HOH A 31 331 92 HOH HOH . J 5 HOH A 32 332 29 HOH HOH . J 5 HOH A 33 333 89 HOH HOH . J 5 HOH A 34 334 51 HOH HOH . J 5 HOH A 35 335 31 HOH HOH . J 5 HOH A 36 336 79 HOH HOH . J 5 HOH A 37 337 8 HOH HOH . J 5 HOH A 38 338 10 HOH HOH . J 5 HOH A 39 339 30 HOH HOH . J 5 HOH A 40 340 68 HOH HOH . J 5 HOH A 41 341 20 HOH HOH . J 5 HOH A 42 342 55 HOH HOH . J 5 HOH A 43 343 86 HOH HOH . J 5 HOH A 44 344 2 HOH HOH . J 5 HOH A 45 345 54 HOH HOH . J 5 HOH A 46 346 42 HOH HOH . J 5 HOH A 47 347 98 HOH HOH . J 5 HOH A 48 348 26 HOH HOH . J 5 HOH A 49 349 4 HOH HOH . J 5 HOH A 50 350 71 HOH HOH . J 5 HOH A 51 351 119 HOH HOH . J 5 HOH A 52 352 24 HOH HOH . J 5 HOH A 53 353 47 HOH HOH . J 5 HOH A 54 354 21 HOH HOH . J 5 HOH A 55 355 36 HOH HOH . J 5 HOH A 56 356 33 HOH HOH . J 5 HOH A 57 357 5 HOH HOH . J 5 HOH A 58 358 128 HOH HOH . J 5 HOH A 59 359 15 HOH HOH . J 5 HOH A 60 360 56 HOH HOH . J 5 HOH A 61 361 6 HOH HOH . J 5 HOH A 62 362 59 HOH HOH . J 5 HOH A 63 363 78 HOH HOH . J 5 HOH A 64 364 73 HOH HOH . J 5 HOH A 65 365 76 HOH HOH . J 5 HOH A 66 366 67 HOH HOH . J 5 HOH A 67 367 7 HOH HOH . J 5 HOH A 68 368 115 HOH HOH . J 5 HOH A 69 369 63 HOH HOH . J 5 HOH A 70 370 74 HOH HOH . J 5 HOH A 71 371 90 HOH HOH . J 5 HOH A 72 372 3 HOH HOH . J 5 HOH A 73 373 14 HOH HOH . J 5 HOH A 74 374 25 HOH HOH . J 5 HOH A 75 375 75 HOH HOH . J 5 HOH A 76 376 46 HOH HOH . J 5 HOH A 77 377 27 HOH HOH . J 5 HOH A 78 378 72 HOH HOH . J 5 HOH A 79 379 94 HOH HOH . J 5 HOH A 80 380 107 HOH HOH . J 5 HOH A 81 381 58 HOH HOH . J 5 HOH A 82 382 34 HOH HOH . J 5 HOH A 83 383 19 HOH HOH . J 5 HOH A 84 384 81 HOH HOH . J 5 HOH A 85 385 64 HOH HOH . J 5 HOH A 86 386 39 HOH HOH . J 5 HOH A 87 387 38 HOH HOH . J 5 HOH A 88 388 12 HOH HOH . J 5 HOH A 89 389 91 HOH HOH . J 5 HOH A 90 390 105 HOH HOH . J 5 HOH A 91 391 114 HOH HOH . J 5 HOH A 92 392 48 HOH HOH . J 5 HOH A 93 393 37 HOH HOH . J 5 HOH A 94 394 13 HOH HOH . J 5 HOH A 95 395 35 HOH HOH . J 5 HOH A 96 396 100 HOH HOH . J 5 HOH A 97 397 60 HOH HOH . J 5 HOH A 98 398 111 HOH HOH . J 5 HOH A 99 399 102 HOH HOH . J 5 HOH A 100 400 127 HOH HOH . J 5 HOH A 101 401 85 HOH HOH . J 5 HOH A 102 402 22 HOH HOH . J 5 HOH A 103 403 106 HOH HOH . J 5 HOH A 104 404 108 HOH HOH . J 5 HOH A 105 405 83 HOH HOH . J 5 HOH A 106 406 120 HOH HOH . J 5 HOH A 107 407 52 HOH HOH . J 5 HOH A 108 408 118 HOH HOH . J 5 HOH A 109 409 99 HOH HOH . J 5 HOH A 110 410 103 HOH HOH . J 5 HOH A 111 411 40 HOH HOH . J 5 HOH A 112 412 96 HOH HOH . J 5 HOH A 113 413 122 HOH HOH . J 5 HOH A 114 414 130 HOH HOH . J 5 HOH A 115 415 112 HOH HOH . J 5 HOH A 116 416 129 HOH HOH . J 5 HOH A 117 417 110 HOH HOH . J 5 HOH A 118 418 77 HOH HOH . J 5 HOH A 119 419 125 HOH HOH . J 5 HOH A 120 420 113 HOH HOH . J 5 HOH A 121 421 44 HOH HOH . J 5 HOH A 122 422 61 HOH HOH . J 5 HOH A 123 423 50 HOH HOH . J 5 HOH A 124 424 9 HOH HOH . J 5 HOH A 125 425 53 HOH HOH . J 5 HOH A 126 426 109 HOH HOH . J 5 HOH A 127 427 101 HOH HOH . J 5 HOH A 128 428 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -8.579 -21.986 11.811 1 17.12 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 4 -7.74 -20.814 11.804 1 13.62 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 4 -7.854 -23.22 12.338 1 19.28 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 4 -6.723 -23.469 11.499 1 19.85 ? O2 EDO 205 A 1 HETATM 5 H H11 EDO . . . F 4 -8.928 -22.182 10.795 1 20.55 ? H11 EDO 205 A 1 HETATM 6 H H12 EDO . . . F 4 -9.457 -21.794 12.431 1 20.55 ? H12 EDO 205 A 1 HETATM 7 H HO1 EDO . . . F 4 -8.242 -20.06 11.463 1 16.34 ? HO1 EDO 205 A 1 HETATM 8 H H21 EDO . . . F 4 -8.525 -24.081 12.326 1 23.13 ? H21 EDO 205 A 1 HETATM 9 H H22 EDO . . . F 4 -7.526 -23.05 13.366 1 23.13 ? H22 EDO 205 A 1 HETATM 10 H HO2 EDO . . . F 4 -6.25 -24.249 11.819 1 23.82 ? HO2 EDO 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #