data_5VBP
#
_model_server_result.job_id            I90yGMocFUcUtvhJy1guiA 
_model_server_result.datetime_utc      '2024-11-24 11:36:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    5VBP 
#
_exptl.entry_id    5VBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VBP 
_cell.length_a            42.125 
_cell.length_b            59.452 
_cell.length_c            115.244 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 170 n n 
C1 C2 EDO sing 171 n n 
C1 H11 EDO sing 172 n n 
C1 H12 EDO sing 173 n n 
O1 HO1 EDO sing 174 n n 
C2 O2 EDO sing 175 n n 
C2 H21 EDO sing 176 n n 
C2 H22 EDO sing 177 n n 
O2 HO2 EDO sing 178 n n 
#
_atom_sites.entry_id                     5VBP 
_atom_sites.fract_transf_matrix[1][1]    0.023739 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01682 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 1 EDO EDO . 
D 2 EDO A 1 202 4 EDO EDO . 
E 3 PEG A 1 203 1 PEG PEG . 
F 4 79C A 1 204 1 79C LIG . 
G 2 EDO B 1 201 2 EDO EDO . 
H 2 EDO B 1 202 3 EDO EDO . 
I 5 DMS B 1 203 1 DMS DMS . 
J 4 79C B 1 204 2 79C LIG . 
K 6 HOH A 1 301 20 HOH HOH . 
K 6 HOH A 2 302 110 HOH HOH . 
K 6 HOH A 3 303 40 HOH HOH . 
K 6 HOH A 4 304 87 HOH HOH . 
K 6 HOH A 5 305 161 HOH HOH . 
K 6 HOH A 6 306 69 HOH HOH . 
K 6 HOH A 7 307 127 HOH HOH . 
K 6 HOH A 8 308 191 HOH HOH . 
K 6 HOH A 9 309 180 HOH HOH . 
K 6 HOH A 10 310 1 HOH HOH . 
K 6 HOH A 11 311 116 HOH HOH . 
K 6 HOH A 12 312 132 HOH HOH . 
K 6 HOH A 13 313 145 HOH HOH . 
K 6 HOH A 14 314 21 HOH HOH . 
K 6 HOH A 15 315 107 HOH HOH . 
K 6 HOH A 16 316 2 HOH HOH . 
K 6 HOH A 17 317 133 HOH HOH . 
K 6 HOH A 18 318 147 HOH HOH . 
K 6 HOH A 19 319 221 HOH HOH . 
K 6 HOH A 20 320 120 HOH HOH . 
K 6 HOH A 21 321 106 HOH HOH . 
K 6 HOH A 22 322 75 HOH HOH . 
K 6 HOH A 23 323 68 HOH HOH . 
K 6 HOH A 24 324 219 HOH HOH . 
K 6 HOH A 25 325 15 HOH HOH . 
K 6 HOH A 26 326 182 HOH HOH . 
K 6 HOH A 27 327 12 HOH HOH . 
K 6 HOH A 28 328 72 HOH HOH . 
K 6 HOH A 29 329 117 HOH HOH . 
K 6 HOH A 30 330 101 HOH HOH . 
K 6 HOH A 31 331 178 HOH HOH . 
K 6 HOH A 32 332 11 HOH HOH . 
K 6 HOH A 33 333 57 HOH HOH . 
K 6 HOH A 34 334 199 HOH HOH . 
K 6 HOH A 35 335 5 HOH HOH . 
K 6 HOH A 36 336 22 HOH HOH . 
K 6 HOH A 37 337 8 HOH HOH . 
K 6 HOH A 38 338 82 HOH HOH . 
K 6 HOH A 39 339 119 HOH HOH . 
K 6 HOH A 40 340 7 HOH HOH . 
K 6 HOH A 41 341 156 HOH HOH . 
K 6 HOH A 42 342 9 HOH HOH . 
K 6 HOH A 43 343 118 HOH HOH . 
K 6 HOH A 44 344 19 HOH HOH . 
K 6 HOH A 45 345 141 HOH HOH . 
K 6 HOH A 46 346 204 HOH HOH . 
K 6 HOH A 47 347 4 HOH HOH . 
K 6 HOH A 48 348 146 HOH HOH . 
K 6 HOH A 49 349 76 HOH HOH . 
K 6 HOH A 50 350 176 HOH HOH . 
K 6 HOH A 51 351 115 HOH HOH . 
K 6 HOH A 52 352 6 HOH HOH . 
K 6 HOH A 53 353 64 HOH HOH . 
K 6 HOH A 54 354 226 HOH HOH . 
K 6 HOH A 55 355 142 HOH HOH . 
K 6 HOH A 56 356 202 HOH HOH . 
K 6 HOH A 57 357 59 HOH HOH . 
K 6 HOH A 58 358 105 HOH HOH . 
K 6 HOH A 59 359 97 HOH HOH . 
K 6 HOH A 60 360 23 HOH HOH . 
K 6 HOH A 61 361 205 HOH HOH . 
K 6 HOH A 62 362 17 HOH HOH . 
K 6 HOH A 63 363 168 HOH HOH . 
K 6 HOH A 64 364 98 HOH HOH . 
K 6 HOH A 65 365 171 HOH HOH . 
K 6 HOH A 66 366 135 HOH HOH . 
K 6 HOH A 67 367 10 HOH HOH . 
K 6 HOH A 68 368 70 HOH HOH . 
K 6 HOH A 69 369 91 HOH HOH . 
K 6 HOH A 70 370 100 HOH HOH . 
K 6 HOH A 71 371 13 HOH HOH . 
K 6 HOH A 72 372 157 HOH HOH . 
K 6 HOH A 73 373 212 HOH HOH . 
K 6 HOH A 74 374 55 HOH HOH . 
K 6 HOH A 75 375 3 HOH HOH . 
K 6 HOH A 76 376 122 HOH HOH . 
K 6 HOH A 77 377 177 HOH HOH . 
K 6 HOH A 78 378 175 HOH HOH . 
K 6 HOH A 79 379 104 HOH HOH . 
K 6 HOH A 80 380 25 HOH HOH . 
K 6 HOH A 81 381 14 HOH HOH . 
K 6 HOH A 82 382 88 HOH HOH . 
K 6 HOH A 83 383 163 HOH HOH . 
K 6 HOH A 84 384 79 HOH HOH . 
K 6 HOH A 85 385 16 HOH HOH . 
K 6 HOH A 86 386 197 HOH HOH . 
K 6 HOH A 87 387 220 HOH HOH . 
K 6 HOH A 88 388 190 HOH HOH . 
K 6 HOH A 89 389 131 HOH HOH . 
K 6 HOH A 90 390 84 HOH HOH . 
K 6 HOH A 91 391 194 HOH HOH . 
K 6 HOH A 92 392 203 HOH HOH . 
K 6 HOH A 93 393 201 HOH HOH . 
K 6 HOH A 94 394 60 HOH HOH . 
K 6 HOH A 95 395 209 HOH HOH . 
K 6 HOH A 96 396 198 HOH HOH . 
K 6 HOH A 97 397 148 HOH HOH . 
K 6 HOH A 98 398 99 HOH HOH . 
K 6 HOH A 99 399 174 HOH HOH . 
K 6 HOH A 100 400 128 HOH HOH . 
K 6 HOH A 101 401 140 HOH HOH . 
K 6 HOH A 102 402 126 HOH HOH . 
K 6 HOH A 103 403 143 HOH HOH . 
K 6 HOH A 104 404 200 HOH HOH . 
K 6 HOH A 105 405 183 HOH HOH . 
K 6 HOH A 106 406 51 HOH HOH . 
K 6 HOH A 107 407 196 HOH HOH . 
K 6 HOH A 108 408 167 HOH HOH . 
K 6 HOH A 109 409 164 HOH HOH . 
K 6 HOH A 110 410 165 HOH HOH . 
K 6 HOH A 111 411 151 HOH HOH . 
K 6 HOH A 112 412 166 HOH HOH . 
K 6 HOH A 113 413 158 HOH HOH . 
L 6 HOH B 1 301 73 HOH HOH . 
L 6 HOH B 2 302 139 HOH HOH . 
L 6 HOH B 3 303 27 HOH HOH . 
L 6 HOH B 4 304 74 HOH HOH . 
L 6 HOH B 5 305 108 HOH HOH . 
L 6 HOH B 6 306 52 HOH HOH . 
L 6 HOH B 7 307 56 HOH HOH . 
L 6 HOH B 8 308 92 HOH HOH . 
L 6 HOH B 9 309 35 HOH HOH . 
L 6 HOH B 10 310 153 HOH HOH . 
L 6 HOH B 11 311 114 HOH HOH . 
L 6 HOH B 12 312 83 HOH HOH . 
L 6 HOH B 13 313 58 HOH HOH . 
L 6 HOH B 14 314 172 HOH HOH . 
L 6 HOH B 15 315 66 HOH HOH . 
L 6 HOH B 16 316 103 HOH HOH . 
L 6 HOH B 17 317 192 HOH HOH . 
L 6 HOH B 18 318 134 HOH HOH . 
L 6 HOH B 19 319 31 HOH HOH . 
L 6 HOH B 20 320 67 HOH HOH . 
L 6 HOH B 21 321 206 HOH HOH . 
L 6 HOH B 22 322 124 HOH HOH . 
L 6 HOH B 23 323 181 HOH HOH . 
L 6 HOH B 24 324 222 HOH HOH . 
L 6 HOH B 25 325 111 HOH HOH . 
L 6 HOH B 26 326 48 HOH HOH . 
L 6 HOH B 27 327 37 HOH HOH . 
L 6 HOH B 28 328 136 HOH HOH . 
L 6 HOH B 29 329 41 HOH HOH . 
L 6 HOH B 30 330 81 HOH HOH . 
L 6 HOH B 31 331 80 HOH HOH . 
L 6 HOH B 32 332 137 HOH HOH . 
L 6 HOH B 33 333 29 HOH HOH . 
L 6 HOH B 34 334 47 HOH HOH . 
L 6 HOH B 35 335 138 HOH HOH . 
L 6 HOH B 36 336 34 HOH HOH . 
L 6 HOH B 37 337 44 HOH HOH . 
L 6 HOH B 38 338 53 HOH HOH . 
L 6 HOH B 39 339 189 HOH HOH . 
L 6 HOH B 40 340 125 HOH HOH . 
L 6 HOH B 41 341 155 HOH HOH . 
L 6 HOH B 42 342 49 HOH HOH . 
L 6 HOH B 43 343 207 HOH HOH . 
L 6 HOH B 44 344 61 HOH HOH . 
L 6 HOH B 45 345 18 HOH HOH . 
L 6 HOH B 46 346 43 HOH HOH . 
L 6 HOH B 47 347 94 HOH HOH . 
L 6 HOH B 48 348 32 HOH HOH . 
L 6 HOH B 49 349 46 HOH HOH . 
L 6 HOH B 50 350 65 HOH HOH . 
L 6 HOH B 51 351 228 HOH HOH . 
L 6 HOH B 52 352 159 HOH HOH . 
L 6 HOH B 53 353 162 HOH HOH . 
L 6 HOH B 54 354 77 HOH HOH . 
L 6 HOH B 55 355 36 HOH HOH . 
L 6 HOH B 56 356 63 HOH HOH . 
L 6 HOH B 57 357 89 HOH HOH . 
L 6 HOH B 58 358 71 HOH HOH . 
L 6 HOH B 59 359 39 HOH HOH . 
L 6 HOH B 60 360 85 HOH HOH . 
L 6 HOH B 61 361 184 HOH HOH . 
L 6 HOH B 62 362 54 HOH HOH . 
L 6 HOH B 63 363 216 HOH HOH . 
L 6 HOH B 64 364 149 HOH HOH . 
L 6 HOH B 65 365 28 HOH HOH . 
L 6 HOH B 66 366 121 HOH HOH . 
L 6 HOH B 67 367 38 HOH HOH . 
L 6 HOH B 68 368 86 HOH HOH . 
L 6 HOH B 69 369 195 HOH HOH . 
L 6 HOH B 70 370 214 HOH HOH . 
L 6 HOH B 71 371 90 HOH HOH . 
L 6 HOH B 72 372 213 HOH HOH . 
L 6 HOH B 73 373 93 HOH HOH . 
L 6 HOH B 74 374 33 HOH HOH . 
L 6 HOH B 75 375 42 HOH HOH . 
L 6 HOH B 76 376 26 HOH HOH . 
L 6 HOH B 77 377 78 HOH HOH . 
L 6 HOH B 78 378 160 HOH HOH . 
L 6 HOH B 79 379 24 HOH HOH . 
L 6 HOH B 80 380 102 HOH HOH . 
L 6 HOH B 81 381 95 HOH HOH . 
L 6 HOH B 82 382 185 HOH HOH . 
L 6 HOH B 83 383 45 HOH HOH . 
L 6 HOH B 84 384 129 HOH HOH . 
L 6 HOH B 85 385 50 HOH HOH . 
L 6 HOH B 86 386 173 HOH HOH . 
L 6 HOH B 87 387 217 HOH HOH . 
L 6 HOH B 88 388 109 HOH HOH . 
L 6 HOH B 89 389 30 HOH HOH . 
L 6 HOH B 90 390 186 HOH HOH . 
L 6 HOH B 91 391 210 HOH HOH . 
L 6 HOH B 92 392 211 HOH HOH . 
L 6 HOH B 93 393 187 HOH HOH . 
L 6 HOH B 94 394 179 HOH HOH . 
L 6 HOH B 95 395 62 HOH HOH . 
L 6 HOH B 96 396 227 HOH HOH . 
L 6 HOH B 97 397 193 HOH HOH . 
L 6 HOH B 98 398 150 HOH HOH . 
L 6 HOH B 99 399 169 HOH HOH . 
L 6 HOH B 100 400 123 HOH HOH . 
L 6 HOH B 101 401 112 HOH HOH . 
L 6 HOH B 102 402 188 HOH HOH . 
L 6 HOH B 103 403 130 HOH HOH . 
L 6 HOH B 104 404 154 HOH HOH . 
L 6 HOH B 105 405 223 HOH HOH . 
L 6 HOH B 106 406 215 HOH HOH . 
L 6 HOH B 107 407 218 HOH HOH . 
L 6 HOH B 108 408 208 HOH HOH . 
L 6 HOH B 109 409 113 HOH HOH . 
L 6 HOH B 110 410 152 HOH HOH . 
L 6 HOH B 111 411 225 HOH HOH . 
L 6 HOH B 112 412 96 HOH HOH . 
L 6 HOH B 113 413 224 HOH HOH . 
L 6 HOH B 114 414 170 HOH HOH . 
L 6 HOH B 115 415 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 2 -6.619 72.823 51.279 1 24.64 ? C1 EDO 201 B 1 
HETATM 2 O O1 EDO . . . G 2 -5.735 71.816 50.764 1 14.16 ? O1 EDO 201 B 1 
HETATM 3 C C2 EDO . . . G 2 -5.873 74.138 51.394 1 27.3 ? C2 EDO 201 B 1 
HETATM 4 O O2 EDO . . . G 2 -4.781 73.938 52.298 1 18.63 ? O2 EDO 201 B 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           384 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#