data_5VBQ # _model_server_result.job_id YJt8CRZmCjcTFx1a9jNguA _model_server_result.datetime_utc '2024-11-26 23:11:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":207}' # _entry.id 5VBQ # _exptl.entry_id 5VBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.9 _cell.angle_gamma 90 _cell.entry_id 5VBQ _cell.length_a 65.59 _cell.length_b 31 _cell.length_c 69.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,V 1 1 B,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5VBQ _atom_sites.fract_transf_matrix[1][1] 0.015246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001844 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R78 A 1 201 1 R78 R78 . D 3 CL A 1 202 1 CL CL . E 4 EDO A 1 203 2 EDO EDO . F 4 EDO A 1 204 3 EDO EDO . G 4 EDO A 1 205 4 EDO EDO . H 4 EDO A 1 206 5 EDO EDO . I 4 EDO A 1 207 8 EDO EDO . J 4 EDO A 1 208 9 EDO EDO . K 4 EDO A 1 209 11 EDO EDO . L 4 EDO A 1 210 12 EDO EDO . M 4 EDO A 1 211 13 EDO EDO . N 4 EDO A 1 212 16 EDO EDO . O 2 R78 B 1 201 2 R78 R78 . P 4 EDO B 1 202 1 EDO EDO . Q 4 EDO B 1 203 6 EDO EDO . R 4 EDO B 1 204 7 EDO EDO . S 4 EDO B 1 205 10 EDO EDO . T 4 EDO B 1 206 14 EDO EDO . U 4 EDO B 1 207 15 EDO EDO . V 5 HOH A 1 301 78 HOH HOH . V 5 HOH A 2 302 115 HOH HOH . V 5 HOH A 3 303 14 HOH HOH . V 5 HOH A 4 304 12 HOH HOH . V 5 HOH A 5 305 24 HOH HOH . V 5 HOH A 6 306 105 HOH HOH . V 5 HOH A 7 307 21 HOH HOH . V 5 HOH A 8 308 76 HOH HOH . V 5 HOH A 9 309 154 HOH HOH . V 5 HOH A 10 310 96 HOH HOH . V 5 HOH A 11 311 146 HOH HOH . V 5 HOH A 12 312 103 HOH HOH . V 5 HOH A 13 313 182 HOH HOH . V 5 HOH A 14 314 178 HOH HOH . V 5 HOH A 15 315 71 HOH HOH . V 5 HOH A 16 316 27 HOH HOH . V 5 HOH A 17 317 63 HOH HOH . V 5 HOH A 18 318 49 HOH HOH . V 5 HOH A 19 319 1 HOH HOH . V 5 HOH A 20 320 39 HOH HOH . V 5 HOH A 21 321 51 HOH HOH . V 5 HOH A 22 322 22 HOH HOH . V 5 HOH A 23 323 84 HOH HOH . V 5 HOH A 24 324 149 HOH HOH . V 5 HOH A 25 325 123 HOH HOH . V 5 HOH A 26 326 65 HOH HOH . V 5 HOH A 27 327 7 HOH HOH . V 5 HOH A 28 328 8 HOH HOH . V 5 HOH A 29 329 57 HOH HOH . V 5 HOH A 30 330 126 HOH HOH . V 5 HOH A 31 331 112 HOH HOH . V 5 HOH A 32 332 170 HOH HOH . V 5 HOH A 33 333 118 HOH HOH . V 5 HOH A 34 334 38 HOH HOH . V 5 HOH A 35 335 3 HOH HOH . V 5 HOH A 36 336 25 HOH HOH . V 5 HOH A 37 337 46 HOH HOH . V 5 HOH A 38 338 163 HOH HOH . V 5 HOH A 39 339 67 HOH HOH . V 5 HOH A 40 340 33 HOH HOH . V 5 HOH A 41 341 167 HOH HOH . V 5 HOH A 42 342 135 HOH HOH . V 5 HOH A 43 343 108 HOH HOH . V 5 HOH A 44 344 132 HOH HOH . V 5 HOH A 45 345 110 HOH HOH . V 5 HOH A 46 346 52 HOH HOH . V 5 HOH A 47 347 58 HOH HOH . V 5 HOH A 48 348 4 HOH HOH . V 5 HOH A 49 349 125 HOH HOH . V 5 HOH A 50 350 168 HOH HOH . V 5 HOH A 51 351 36 HOH HOH . V 5 HOH A 52 352 28 HOH HOH . V 5 HOH A 53 353 181 HOH HOH . V 5 HOH A 54 354 6 HOH HOH . V 5 HOH A 55 355 26 HOH HOH . V 5 HOH A 56 356 104 HOH HOH . V 5 HOH A 57 357 88 HOH HOH . V 5 HOH A 58 358 77 HOH HOH . V 5 HOH A 59 359 117 HOH HOH . V 5 HOH A 60 360 94 HOH HOH . V 5 HOH A 61 361 54 HOH HOH . V 5 HOH A 62 362 75 HOH HOH . V 5 HOH A 63 363 55 HOH HOH . V 5 HOH A 64 364 23 HOH HOH . V 5 HOH A 65 365 45 HOH HOH . V 5 HOH A 66 366 169 HOH HOH . V 5 HOH A 67 367 148 HOH HOH . V 5 HOH A 68 368 152 HOH HOH . V 5 HOH A 69 369 60 HOH HOH . V 5 HOH A 70 370 61 HOH HOH . V 5 HOH A 71 371 18 HOH HOH . V 5 HOH A 72 372 158 HOH HOH . V 5 HOH A 73 373 89 HOH HOH . V 5 HOH A 74 374 9 HOH HOH . V 5 HOH A 75 375 128 HOH HOH . V 5 HOH A 76 376 176 HOH HOH . V 5 HOH A 77 377 98 HOH HOH . V 5 HOH A 78 378 11 HOH HOH . V 5 HOH A 79 379 30 HOH HOH . V 5 HOH A 80 380 87 HOH HOH . V 5 HOH A 81 381 131 HOH HOH . V 5 HOH A 82 382 180 HOH HOH . V 5 HOH A 83 383 31 HOH HOH . V 5 HOH A 84 384 73 HOH HOH . V 5 HOH A 85 385 156 HOH HOH . V 5 HOH A 86 386 92 HOH HOH . V 5 HOH A 87 387 72 HOH HOH . V 5 HOH A 88 388 114 HOH HOH . V 5 HOH A 89 389 50 HOH HOH . V 5 HOH A 90 390 173 HOH HOH . V 5 HOH A 91 391 155 HOH HOH . V 5 HOH A 92 392 139 HOH HOH . V 5 HOH A 93 393 133 HOH HOH . V 5 HOH A 94 394 175 HOH HOH . V 5 HOH A 95 395 144 HOH HOH . V 5 HOH A 96 396 189 HOH HOH . V 5 HOH A 97 397 183 HOH HOH . V 5 HOH A 98 398 166 HOH HOH . V 5 HOH A 99 399 162 HOH HOH . V 5 HOH A 100 400 83 HOH HOH . V 5 HOH A 101 401 120 HOH HOH . V 5 HOH A 102 402 121 HOH HOH . V 5 HOH A 103 403 101 HOH HOH . V 5 HOH A 104 404 157 HOH HOH . V 5 HOH A 105 405 164 HOH HOH . V 5 HOH A 106 406 62 HOH HOH . V 5 HOH A 107 407 42 HOH HOH . V 5 HOH A 108 408 86 HOH HOH . V 5 HOH A 109 409 147 HOH HOH . W 5 HOH B 1 301 13 HOH HOH . W 5 HOH B 2 302 179 HOH HOH . W 5 HOH B 3 303 68 HOH HOH . W 5 HOH B 4 304 187 HOH HOH . W 5 HOH B 5 305 91 HOH HOH . W 5 HOH B 6 306 44 HOH HOH . W 5 HOH B 7 307 107 HOH HOH . W 5 HOH B 8 308 188 HOH HOH . W 5 HOH B 9 309 113 HOH HOH . W 5 HOH B 10 310 174 HOH HOH . W 5 HOH B 11 311 2 HOH HOH . W 5 HOH B 12 312 15 HOH HOH . W 5 HOH B 13 313 80 HOH HOH . W 5 HOH B 14 314 53 HOH HOH . W 5 HOH B 15 315 17 HOH HOH . W 5 HOH B 16 316 124 HOH HOH . W 5 HOH B 17 317 32 HOH HOH . W 5 HOH B 18 318 29 HOH HOH . W 5 HOH B 19 319 106 HOH HOH . W 5 HOH B 20 320 69 HOH HOH . W 5 HOH B 21 321 10 HOH HOH . W 5 HOH B 22 322 102 HOH HOH . W 5 HOH B 23 323 66 HOH HOH . W 5 HOH B 24 324 5 HOH HOH . W 5 HOH B 25 325 109 HOH HOH . W 5 HOH B 26 326 140 HOH HOH . W 5 HOH B 27 327 34 HOH HOH . W 5 HOH B 28 328 16 HOH HOH . W 5 HOH B 29 329 100 HOH HOH . W 5 HOH B 30 330 141 HOH HOH . W 5 HOH B 31 331 40 HOH HOH . W 5 HOH B 32 332 127 HOH HOH . W 5 HOH B 33 333 99 HOH HOH . W 5 HOH B 34 334 161 HOH HOH . W 5 HOH B 35 335 81 HOH HOH . W 5 HOH B 36 336 37 HOH HOH . W 5 HOH B 37 337 93 HOH HOH . W 5 HOH B 38 338 159 HOH HOH . W 5 HOH B 39 339 153 HOH HOH . W 5 HOH B 40 340 90 HOH HOH . W 5 HOH B 41 341 79 HOH HOH . W 5 HOH B 42 342 138 HOH HOH . W 5 HOH B 43 343 129 HOH HOH . W 5 HOH B 44 344 35 HOH HOH . W 5 HOH B 45 345 184 HOH HOH . W 5 HOH B 46 346 20 HOH HOH . W 5 HOH B 47 347 74 HOH HOH . W 5 HOH B 48 348 56 HOH HOH . W 5 HOH B 49 349 85 HOH HOH . W 5 HOH B 50 350 41 HOH HOH . W 5 HOH B 51 351 111 HOH HOH . W 5 HOH B 52 352 48 HOH HOH . W 5 HOH B 53 353 145 HOH HOH . W 5 HOH B 54 354 150 HOH HOH . W 5 HOH B 55 355 43 HOH HOH . W 5 HOH B 56 356 134 HOH HOH . W 5 HOH B 57 357 97 HOH HOH . W 5 HOH B 58 358 137 HOH HOH . W 5 HOH B 59 359 151 HOH HOH . W 5 HOH B 60 360 19 HOH HOH . W 5 HOH B 61 361 82 HOH HOH . W 5 HOH B 62 362 177 HOH HOH . W 5 HOH B 63 363 122 HOH HOH . W 5 HOH B 64 364 64 HOH HOH . W 5 HOH B 65 365 70 HOH HOH . W 5 HOH B 66 366 59 HOH HOH . W 5 HOH B 67 367 172 HOH HOH . W 5 HOH B 68 368 171 HOH HOH . W 5 HOH B 69 369 185 HOH HOH . W 5 HOH B 70 370 47 HOH HOH . W 5 HOH B 71 371 160 HOH HOH . W 5 HOH B 72 372 136 HOH HOH . W 5 HOH B 73 373 190 HOH HOH . W 5 HOH B 74 374 186 HOH HOH . W 5 HOH B 75 375 119 HOH HOH . W 5 HOH B 76 376 130 HOH HOH . W 5 HOH B 77 377 165 HOH HOH . W 5 HOH B 78 378 143 HOH HOH . W 5 HOH B 79 379 142 HOH HOH . W 5 HOH B 80 380 95 HOH HOH . W 5 HOH B 81 381 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . U 4 -17.782 7.121 -26.261 1 69.2 ? C1 EDO 207 B 1 HETATM 2 O O1 EDO . . . U 4 -16.688 7.897 -25.755 1 69.71 ? O1 EDO 207 B 1 HETATM 3 C C2 EDO . . . U 4 -17.61 6.884 -27.761 1 68.15 ? C2 EDO 207 B 1 HETATM 4 O O2 EDO . . . U 4 -18.841 6.448 -28.359 1 65.82 ? O2 EDO 207 B 1 HETATM 5 H H11 EDO . . . U 4 -18.722 7.647 -26.078 1 83.04 ? H11 EDO 207 B 1 HETATM 6 H H12 EDO . . . U 4 -17.824 6.162 -25.741 1 83.04 ? H12 EDO 207 B 1 HETATM 7 H HO1 EDO . . . U 4 -16.807 8.041 -24.806 1 83.65 ? HO1 EDO 207 B 1 HETATM 8 H H21 EDO . . . U 4 -17.281 7.809 -28.24 1 81.78 ? H21 EDO 207 B 1 HETATM 9 H H22 EDO . . . U 4 -16.839 6.129 -27.924 1 81.78 ? H22 EDO 207 B 1 HETATM 10 H HO2 EDO . . . U 4 -18.706 6.306 -29.306 1 78.98 ? HO2 EDO 207 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #