data_5VBR
#
_model_server_result.job_id            Eb0M0tVcf8hLyZae7IDKuQ 
_model_server_result.datetime_utc      '2024-11-05 07:56:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vbr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5VBR 
#
_exptl.entry_id    5VBR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.09 
_cell.angle_gamma         90 
_cell.entry_id            5VBR 
_cell.length_a            65.45 
_cell.length_b            31.05 
_cell.length_c            69.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VBR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,R 1 1 
B,K,L,M,N,O,P,Q,S 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5VBR 
_atom_sites.fract_transf_matrix[1][1]    0.015279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014437 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IBI A 1 201 1 IBI IBI . 
D 3 EDO A 1 202 2 EDO EDO . 
E 3 EDO A 1 203 3 EDO EDO . 
F 3 EDO A 1 204 4 EDO EDO . 
G 3 EDO A 1 205 6 EDO EDO . 
H 3 EDO A 1 206 7 EDO EDO . 
I 3 EDO A 1 207 10 EDO EDO . 
J 4 CL A 1 208 2 CL CL . 
K 2 IBI B 1 201 2 IBI IBI . 
L 3 EDO B 1 202 1 EDO EDO . 
M 3 EDO B 1 203 5 EDO EDO . 
N 3 EDO B 1 204 8 EDO EDO . 
O 3 EDO B 1 205 9 EDO EDO . 
P 3 EDO B 1 206 11 EDO EDO . 
Q 4 CL B 1 207 1 CL CL . 
R 5 HOH A 1 301 104 HOH HOH . 
R 5 HOH A 2 302 88 HOH HOH . 
R 5 HOH A 3 303 102 HOH HOH . 
R 5 HOH A 4 304 38 HOH HOH . 
R 5 HOH A 5 305 93 HOH HOH . 
R 5 HOH A 6 306 50 HOH HOH . 
R 5 HOH A 7 307 112 HOH HOH . 
R 5 HOH A 8 308 47 HOH HOH . 
R 5 HOH A 9 309 205 HOH HOH . 
R 5 HOH A 10 310 41 HOH HOH . 
R 5 HOH A 11 311 4 HOH HOH . 
R 5 HOH A 12 312 77 HOH HOH . 
R 5 HOH A 13 313 55 HOH HOH . 
R 5 HOH A 14 314 19 HOH HOH . 
R 5 HOH A 15 315 105 HOH HOH . 
R 5 HOH A 16 316 127 HOH HOH . 
R 5 HOH A 17 317 31 HOH HOH . 
R 5 HOH A 18 318 3 HOH HOH . 
R 5 HOH A 19 319 36 HOH HOH . 
R 5 HOH A 20 320 13 HOH HOH . 
R 5 HOH A 21 321 85 HOH HOH . 
R 5 HOH A 22 322 70 HOH HOH . 
R 5 HOH A 23 323 121 HOH HOH . 
R 5 HOH A 24 324 110 HOH HOH . 
R 5 HOH A 25 325 73 HOH HOH . 
R 5 HOH A 26 326 34 HOH HOH . 
R 5 HOH A 27 327 92 HOH HOH . 
R 5 HOH A 28 328 27 HOH HOH . 
R 5 HOH A 29 329 96 HOH HOH . 
R 5 HOH A 30 330 152 HOH HOH . 
R 5 HOH A 31 331 24 HOH HOH . 
R 5 HOH A 32 332 161 HOH HOH . 
R 5 HOH A 33 333 87 HOH HOH . 
R 5 HOH A 34 334 117 HOH HOH . 
R 5 HOH A 35 335 2 HOH HOH . 
R 5 HOH A 36 336 204 HOH HOH . 
R 5 HOH A 37 337 134 HOH HOH . 
R 5 HOH A 38 338 99 HOH HOH . 
R 5 HOH A 39 339 80 HOH HOH . 
R 5 HOH A 40 340 131 HOH HOH . 
R 5 HOH A 41 341 146 HOH HOH . 
R 5 HOH A 42 342 8 HOH HOH . 
R 5 HOH A 43 343 20 HOH HOH . 
R 5 HOH A 44 344 98 HOH HOH . 
R 5 HOH A 45 345 185 HOH HOH . 
R 5 HOH A 46 346 167 HOH HOH . 
R 5 HOH A 47 347 16 HOH HOH . 
R 5 HOH A 48 348 53 HOH HOH . 
R 5 HOH A 49 349 94 HOH HOH . 
R 5 HOH A 50 350 40 HOH HOH . 
R 5 HOH A 51 351 68 HOH HOH . 
R 5 HOH A 52 352 221 HOH HOH . 
R 5 HOH A 53 353 45 HOH HOH . 
R 5 HOH A 54 354 5 HOH HOH . 
R 5 HOH A 55 355 201 HOH HOH . 
R 5 HOH A 56 356 196 HOH HOH . 
R 5 HOH A 57 357 32 HOH HOH . 
R 5 HOH A 58 358 219 HOH HOH . 
R 5 HOH A 59 359 39 HOH HOH . 
R 5 HOH A 60 360 74 HOH HOH . 
R 5 HOH A 61 361 10 HOH HOH . 
R 5 HOH A 62 362 144 HOH HOH . 
R 5 HOH A 63 363 22 HOH HOH . 
R 5 HOH A 64 364 46 HOH HOH . 
R 5 HOH A 65 365 187 HOH HOH . 
R 5 HOH A 66 366 67 HOH HOH . 
R 5 HOH A 67 367 103 HOH HOH . 
R 5 HOH A 68 368 7 HOH HOH . 
R 5 HOH A 69 369 149 HOH HOH . 
R 5 HOH A 70 370 58 HOH HOH . 
R 5 HOH A 71 371 56 HOH HOH . 
R 5 HOH A 72 372 108 HOH HOH . 
R 5 HOH A 73 373 156 HOH HOH . 
R 5 HOH A 74 374 159 HOH HOH . 
R 5 HOH A 75 375 48 HOH HOH . 
R 5 HOH A 76 376 64 HOH HOH . 
R 5 HOH A 77 377 168 HOH HOH . 
R 5 HOH A 78 378 82 HOH HOH . 
R 5 HOH A 79 379 30 HOH HOH . 
R 5 HOH A 80 380 106 HOH HOH . 
R 5 HOH A 81 381 181 HOH HOH . 
R 5 HOH A 82 382 120 HOH HOH . 
R 5 HOH A 83 383 57 HOH HOH . 
R 5 HOH A 84 384 142 HOH HOH . 
R 5 HOH A 85 385 119 HOH HOH . 
R 5 HOH A 86 386 26 HOH HOH . 
R 5 HOH A 87 387 76 HOH HOH . 
R 5 HOH A 88 388 191 HOH HOH . 
R 5 HOH A 89 389 35 HOH HOH . 
R 5 HOH A 90 390 155 HOH HOH . 
R 5 HOH A 91 391 71 HOH HOH . 
R 5 HOH A 92 392 86 HOH HOH . 
R 5 HOH A 93 393 217 HOH HOH . 
R 5 HOH A 94 394 84 HOH HOH . 
R 5 HOH A 95 395 170 HOH HOH . 
R 5 HOH A 96 396 216 HOH HOH . 
R 5 HOH A 97 397 124 HOH HOH . 
R 5 HOH A 98 398 62 HOH HOH . 
R 5 HOH A 99 399 89 HOH HOH . 
R 5 HOH A 100 400 195 HOH HOH . 
R 5 HOH A 101 401 203 HOH HOH . 
R 5 HOH A 102 402 208 HOH HOH . 
R 5 HOH A 103 403 192 HOH HOH . 
R 5 HOH A 104 404 218 HOH HOH . 
R 5 HOH A 105 405 176 HOH HOH . 
R 5 HOH A 106 406 177 HOH HOH . 
R 5 HOH A 107 407 194 HOH HOH . 
R 5 HOH A 108 408 198 HOH HOH . 
R 5 HOH A 109 409 186 HOH HOH . 
R 5 HOH A 110 410 171 HOH HOH . 
R 5 HOH A 111 411 200 HOH HOH . 
R 5 HOH A 112 412 179 HOH HOH . 
R 5 HOH A 113 413 224 HOH HOH . 
R 5 HOH A 114 414 188 HOH HOH . 
R 5 HOH A 115 415 222 HOH HOH . 
R 5 HOH A 116 416 190 HOH HOH . 
R 5 HOH A 117 417 178 HOH HOH . 
R 5 HOH A 118 418 212 HOH HOH . 
R 5 HOH A 119 419 133 HOH HOH . 
R 5 HOH A 120 420 206 HOH HOH . 
R 5 HOH A 121 421 158 HOH HOH . 
S 5 HOH B 1 301 61 HOH HOH . 
S 5 HOH B 2 302 164 HOH HOH . 
S 5 HOH B 3 303 165 HOH HOH . 
S 5 HOH B 4 304 11 HOH HOH . 
S 5 HOH B 5 305 114 HOH HOH . 
S 5 HOH B 6 306 59 HOH HOH . 
S 5 HOH B 7 307 223 HOH HOH . 
S 5 HOH B 8 308 14 HOH HOH . 
S 5 HOH B 9 309 72 HOH HOH . 
S 5 HOH B 10 310 109 HOH HOH . 
S 5 HOH B 11 311 207 HOH HOH . 
S 5 HOH B 12 312 1 HOH HOH . 
S 5 HOH B 13 313 6 HOH HOH . 
S 5 HOH B 14 314 18 HOH HOH . 
S 5 HOH B 15 315 125 HOH HOH . 
S 5 HOH B 16 316 12 HOH HOH . 
S 5 HOH B 17 317 136 HOH HOH . 
S 5 HOH B 18 318 128 HOH HOH . 
S 5 HOH B 19 319 147 HOH HOH . 
S 5 HOH B 20 320 43 HOH HOH . 
S 5 HOH B 21 321 130 HOH HOH . 
S 5 HOH B 22 322 197 HOH HOH . 
S 5 HOH B 23 323 37 HOH HOH . 
S 5 HOH B 24 324 52 HOH HOH . 
S 5 HOH B 25 325 83 HOH HOH . 
S 5 HOH B 26 326 28 HOH HOH . 
S 5 HOH B 27 327 69 HOH HOH . 
S 5 HOH B 28 328 63 HOH HOH . 
S 5 HOH B 29 329 160 HOH HOH . 
S 5 HOH B 30 330 215 HOH HOH . 
S 5 HOH B 31 331 66 HOH HOH . 
S 5 HOH B 32 332 25 HOH HOH . 
S 5 HOH B 33 333 123 HOH HOH . 
S 5 HOH B 34 334 75 HOH HOH . 
S 5 HOH B 35 335 113 HOH HOH . 
S 5 HOH B 36 336 101 HOH HOH . 
S 5 HOH B 37 337 21 HOH HOH . 
S 5 HOH B 38 338 116 HOH HOH . 
S 5 HOH B 39 339 44 HOH HOH . 
S 5 HOH B 40 340 33 HOH HOH . 
S 5 HOH B 41 341 9 HOH HOH . 
S 5 HOH B 42 342 81 HOH HOH . 
S 5 HOH B 43 343 122 HOH HOH . 
S 5 HOH B 44 344 107 HOH HOH . 
S 5 HOH B 45 345 199 HOH HOH . 
S 5 HOH B 46 346 15 HOH HOH . 
S 5 HOH B 47 347 60 HOH HOH . 
S 5 HOH B 48 348 141 HOH HOH . 
S 5 HOH B 49 349 29 HOH HOH . 
S 5 HOH B 50 350 154 HOH HOH . 
S 5 HOH B 51 351 175 HOH HOH . 
S 5 HOH B 52 352 145 HOH HOH . 
S 5 HOH B 53 353 95 HOH HOH . 
S 5 HOH B 54 354 17 HOH HOH . 
S 5 HOH B 55 355 202 HOH HOH . 
S 5 HOH B 56 356 65 HOH HOH . 
S 5 HOH B 57 357 97 HOH HOH . 
S 5 HOH B 58 358 49 HOH HOH . 
S 5 HOH B 59 359 23 HOH HOH . 
S 5 HOH B 60 360 213 HOH HOH . 
S 5 HOH B 61 361 78 HOH HOH . 
S 5 HOH B 62 362 51 HOH HOH . 
S 5 HOH B 63 363 209 HOH HOH . 
S 5 HOH B 64 364 91 HOH HOH . 
S 5 HOH B 65 365 137 HOH HOH . 
S 5 HOH B 66 366 138 HOH HOH . 
S 5 HOH B 67 367 118 HOH HOH . 
S 5 HOH B 68 368 129 HOH HOH . 
S 5 HOH B 69 369 174 HOH HOH . 
S 5 HOH B 70 370 100 HOH HOH . 
S 5 HOH B 71 371 143 HOH HOH . 
S 5 HOH B 72 372 126 HOH HOH . 
S 5 HOH B 73 373 42 HOH HOH . 
S 5 HOH B 74 374 189 HOH HOH . 
S 5 HOH B 75 375 173 HOH HOH . 
S 5 HOH B 76 376 54 HOH HOH . 
S 5 HOH B 77 377 139 HOH HOH . 
S 5 HOH B 78 378 183 HOH HOH . 
S 5 HOH B 79 379 132 HOH HOH . 
S 5 HOH B 80 380 111 HOH HOH . 
S 5 HOH B 81 381 151 HOH HOH . 
S 5 HOH B 82 382 115 HOH HOH . 
S 5 HOH B 83 383 166 HOH HOH . 
S 5 HOH B 84 384 182 HOH HOH . 
S 5 HOH B 85 385 140 HOH HOH . 
S 5 HOH B 86 386 193 HOH HOH . 
S 5 HOH B 87 387 220 HOH HOH . 
S 5 HOH B 88 388 162 HOH HOH . 
S 5 HOH B 89 389 210 HOH HOH . 
S 5 HOH B 90 390 172 HOH HOH . 
S 5 HOH B 91 391 148 HOH HOH . 
S 5 HOH B 92 392 79 HOH HOH . 
S 5 HOH B 93 393 157 HOH HOH . 
S 5 HOH B 94 394 214 HOH HOH . 
S 5 HOH B 95 395 169 HOH HOH . 
S 5 HOH B 96 396 150 HOH HOH . 
S 5 HOH B 97 397 184 HOH HOH . 
S 5 HOH B 98 398 153 HOH HOH . 
S 5 HOH B 99 399 163 HOH HOH . 
S 5 HOH B 100 400 180 HOH HOH . 
S 5 HOH B 101 401 211 HOH HOH . 
S 5 HOH B 102 402 135 HOH HOH . 
S 5 HOH B 103 403 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 26.575 -19.36 5.874 1 22.24 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . D 3 27.466 -18.251 6.07 1 21.69 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . D 3 27.166 -20.665 6.409 1 23.08 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . D 3 27.297 -20.593 7.834 1 23.81 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#