data_5VBU # _model_server_result.job_id 1E080-mDAYxJxSy37vkwjg _model_server_result.datetime_utc '2024-11-25 09:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 5VBU # _exptl.entry_id 5VBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9beta)-17-hydroxypregn-4-ene-3,20-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.37 _cell.angle_gamma 90 _cell.entry_id 5VBU _cell.length_a 152.431 _cell.length_b 88.385 _cell.length_c 111.417 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I 3 1 A,B,C,D,E,F,G,H,I,J,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 410 A CYS 429 1_555 D FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 B SG CYS 410 B CYS 429 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 C SG CYS 410 C CYS 429 1_555 H FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C21 H30 O3' _chem_comp.formula_weight 330.461 _chem_comp.id 3QZ _chem_comp.mon_nstd_flag . _chem_comp.name (9beta)-17-hydroxypregn-4-ene-3,20-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAP CAA 3QZ sing 1 n n CAA HAA 3QZ sing 2 n n CAA HAAA 3QZ sing 3 n n CAA HAAB 3QZ sing 4 n n CAB CAV 3QZ sing 5 n n CAB HAB 3QZ sing 6 n n CAB HABA 3QZ sing 7 n n CAB HABB 3QZ sing 8 n n CAC CAW 3QZ sing 9 n n CAC HAC 3QZ sing 10 n n CAC HACA 3QZ sing 11 n n CAC HACB 3QZ sing 12 n n OAD CAP 3QZ doub 13 n n CAQ OAE 3QZ doub 14 n n CAX OAF 3QZ sing 15 n n OAF HOAF 3QZ sing 16 n n CAQ CAG 3QZ sing 17 n n CAG CAR 3QZ doub 18 n n CAG HAG 3QZ sing 19 n n CAR CAH 3QZ sing 20 n n CAH CAJ 3QZ sing 21 n n CAH HAH 3QZ sing 22 n n CAH HAHA 3QZ sing 23 n n CAI CAM 3QZ sing 24 n n CAI CAQ 3QZ sing 25 n n CAI HAI 3QZ sing 26 n n CAI HAIA 3QZ sing 27 n n CAS CAJ 3QZ sing 28 n n CAJ HAJ 3QZ sing 29 n n CAJ HAJA 3QZ sing 30 n n CAK CAT 3QZ sing 31 n n CAK CAN 3QZ sing 32 n n CAK HAK 3QZ sing 33 n n CAK HAKA 3QZ sing 34 n n CAU CAL 3QZ sing 35 n n CAL CAO 3QZ sing 36 n n CAL HAL 3QZ sing 37 n n CAL HALA 3QZ sing 38 n n CAM CAV 3QZ sing 39 n n CAM HAM 3QZ sing 40 n n CAM HAMA 3QZ sing 41 n n CAN CAW 3QZ sing 42 n n CAN HAN 3QZ sing 43 n n CAN HANA 3QZ sing 44 n n CAX CAO 3QZ sing 45 n n CAO HAO 3QZ sing 46 n n CAO HAOA 3QZ sing 47 n n CAP CAX 3QZ sing 48 n n CAV CAR 3QZ sing 49 n n CAT CAS 3QZ sing 50 n n CAS CAU 3QZ sing 51 n n CAS HAS 3QZ sing 52 n n CAV CAT 3QZ sing 53 n n CAT HAT 3QZ sing 54 n n CAW CAU 3QZ sing 55 n n CAU HAU 3QZ sing 56 n n CAW CAX 3QZ sing 57 n n # _atom_sites.entry_id 5VBU _atom_sites.fract_transf_matrix[1][1] 0.00656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 501 501 HEM HEM . E 3 3QZ A 1 502 502 3QZ 3QZ . F 2 HEM B 1 501 501 HEM HEM . G 3 3QZ B 1 502 502 3QZ 3QZ . H 2 HEM C 1 501 501 HEM HEM . I 3 3QZ C 1 502 502 3QZ 3QZ . J 4 HOH A 1 601 2 HOH HOH . K 4 HOH B 1 601 3 HOH HOH . K 4 HOH B 2 602 4 HOH HOH . K 4 HOH B 3 603 5 HOH HOH . K 4 HOH B 4 604 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3QZ . . . I 3 -61.816 -36.896 29.43 1 92.34 ? CAA 3QZ 502 C 1 HETATM 2 C CAB 3QZ . . . I 3 -67.493 -41.949 32.957 1 83.91 ? CAB 3QZ 502 C 1 HETATM 3 C CAC 3QZ . . . I 3 -64.106 -39.507 32.133 1 90.62 ? CAC 3QZ 502 C 1 HETATM 4 O OAD 3QZ . . . I 3 -63.018 -36.995 31.317 1 99.64 ? OAD 3QZ 502 C 1 HETATM 5 O OAE 3QZ . . . I 3 -70.865 -44.859 31.014 1 80.72 ? OAE 3QZ 502 C 1 HETATM 6 O OAF 3QZ . . . I 3 -63.731 -38.531 28.545 1 103.22 ? OAF 3QZ 502 C 1 HETATM 7 C CAG 3QZ . . . I 3 -68.585 -44.509 30.823 1 83.6 ? CAG 3QZ 502 C 1 HETATM 8 C CAH 3QZ . . . I 3 -66.151 -44.323 30.965 1 85.17 ? CAH 3QZ 502 C 1 HETATM 9 C CAI 3QZ . . . I 3 -70.267 -42.686 31.579 1 83.14 ? CAI 3QZ 502 C 1 HETATM 10 C CAJ 3QZ . . . I 3 -65.117 -43.393 30.305 1 85.3 ? CAJ 3QZ 502 C 1 HETATM 11 C CAK 3QZ . . . I 3 -66.937 -39.864 30.768 1 86.6 ? CAK 3QZ 502 C 1 HETATM 12 C CAL 3QZ . . . I 3 -62.888 -41.298 29.807 1 88.25 ? CAL 3QZ 502 C 1 HETATM 13 C CAM 3QZ . . . I 3 -69.143 -41.774 31.068 1 83.62 ? CAM 3QZ 502 C 1 HETATM 14 C CAN 3QZ . . . I 3 -65.776 -38.958 30.329 1 87.22 ? CAN 3QZ 502 C 1 HETATM 15 C CAO 3QZ . . . I 3 -62.227 -39.957 29.569 1 92.24 ? CAO 3QZ 502 C 1 HETATM 16 C CAP 3QZ . . . I 3 -62.676 -37.539 30.259 1 95.73 ? CAP 3QZ 502 C 1 HETATM 17 C CAQ 3QZ . . . I 3 -69.962 -44.087 31.136 1 82.31 ? CAQ 3QZ 502 C 1 HETATM 18 C CAR 3QZ . . . I 3 -67.538 -43.695 31.097 1 84.75 ? CAR 3QZ 502 C 1 HETATM 19 C CAS 3QZ . . . I 3 -65.271 -41.92 30.725 1 87.07 ? CAS 3QZ 502 C 1 HETATM 20 C CAT 3QZ . . . I 3 -66.745 -41.396 30.616 1 85.93 ? CAT 3QZ 502 C 1 HETATM 21 C CAU 3QZ . . . I 3 -64.346 -40.93 29.993 1 87.74 ? CAU 3QZ 502 C 1 HETATM 22 C CAV 3QZ . . . I 3 -67.731 -42.211 31.466 1 84.33 ? CAV 3QZ 502 C 1 HETATM 23 C CAW 3QZ . . . I 3 -64.387 -39.531 30.616 1 89.68 ? CAW 3QZ 502 C 1 HETATM 24 C CAX 3QZ . . . I 3 -63.261 -38.873 29.826 1 93.52 ? CAX 3QZ 502 C 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #