data_5VBZ
#
_model_server_result.job_id            IImnFFmsaHmDtHGiXbd-wg 
_model_server_result.datetime_utc      '2024-11-05 05:33:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":202}' 
#
_entry.id    5VBZ 
#
_exptl.entry_id    5VBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VBZ 
_cell.length_a            61.84 
_cell.length_b            75.44 
_cell.length_c            93.63 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1 
B,F,G,L 2 1 
C,H,I,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 77 C CYS 72 1_555 H S24 92V . C 92V 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc1 A OG SER 22 A SER 17 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc2 A OG1 THR 40 A THR 35 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 D O1G GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc4 D O1B GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc5 E MG MG . A MG 202 1_555 K O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc6 E MG MG . A MG 202 1_555 K O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc7 B OG SER 22 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc8 F O3G GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc9 F O2B GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc10 G MG MG . B MG 202 1_555 L O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 G MG MG . B MG 202 1_555 L O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc12 G MG MG . B MG 202 1_555 L O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc13 C OG SER 22 C SER 17 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc14 C O THR 40 C THR 35 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc15 C OG1 THR 40 C THR 35 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc16 I O3G GNP . C GNP 302 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc17 I O2B GNP . C GNP 302 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc18 J MG MG . C MG 303 1_555 M O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VBZ 
_atom_sites.fract_transf_matrix[1][1]    0.016171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GNP A 1 201 2 GNP GNP . 
E 3 MG A 1 202 2 MG MG . 
F 2 GNP B 1 201 1 GNP GNP . 
G 3 MG B 1 202 1 MG MG . 
H 4 92V C 1 301 301 92V LIG . 
I 2 GNP C 1 302 3 GNP GNP . 
J 3 MG C 1 303 3 MG MG . 
K 5 HOH A 1 301 9 HOH HOH . 
K 5 HOH A 2 302 54 HOH HOH . 
K 5 HOH A 3 303 55 HOH HOH . 
K 5 HOH A 4 304 56 HOH HOH . 
K 5 HOH A 5 305 18 HOH HOH . 
K 5 HOH A 6 306 53 HOH HOH . 
K 5 HOH A 7 307 8 HOH HOH . 
K 5 HOH A 8 308 28 HOH HOH . 
K 5 HOH A 9 309 25 HOH HOH . 
K 5 HOH A 10 310 27 HOH HOH . 
K 5 HOH A 11 311 1 HOH HOH . 
K 5 HOH A 12 312 42 HOH HOH . 
K 5 HOH A 13 313 21 HOH HOH . 
K 5 HOH A 14 314 7 HOH HOH . 
K 5 HOH A 15 315 43 HOH HOH . 
K 5 HOH A 16 316 23 HOH HOH . 
K 5 HOH A 17 317 22 HOH HOH . 
K 5 HOH A 18 318 62 HOH HOH . 
K 5 HOH A 19 319 19 HOH HOH . 
K 5 HOH A 20 320 41 HOH HOH . 
K 5 HOH A 21 321 17 HOH HOH . 
K 5 HOH A 22 322 51 HOH HOH . 
L 5 HOH B 1 301 33 HOH HOH . 
L 5 HOH B 2 302 50 HOH HOH . 
L 5 HOH B 3 303 46 HOH HOH . 
L 5 HOH B 4 304 31 HOH HOH . 
L 5 HOH B 5 305 61 HOH HOH . 
L 5 HOH B 6 306 24 HOH HOH . 
L 5 HOH B 7 307 11 HOH HOH . 
L 5 HOH B 8 308 10 HOH HOH . 
L 5 HOH B 9 309 63 HOH HOH . 
L 5 HOH B 10 310 47 HOH HOH . 
L 5 HOH B 11 311 49 HOH HOH . 
L 5 HOH B 12 312 58 HOH HOH . 
L 5 HOH B 13 313 32 HOH HOH . 
L 5 HOH B 14 314 13 HOH HOH . 
L 5 HOH B 15 315 44 HOH HOH . 
L 5 HOH B 16 316 48 HOH HOH . 
M 5 HOH C 1 401 3 HOH HOH . 
M 5 HOH C 2 402 36 HOH HOH . 
M 5 HOH C 3 403 2 HOH HOH . 
M 5 HOH C 4 404 14 HOH HOH . 
M 5 HOH C 5 405 6 HOH HOH . 
M 5 HOH C 6 406 57 HOH HOH . 
M 5 HOH C 7 407 60 HOH HOH . 
M 5 HOH C 8 408 66 HOH HOH . 
M 5 HOH C 9 409 39 HOH HOH . 
M 5 HOH C 10 410 37 HOH HOH . 
M 5 HOH C 11 411 29 HOH HOH . 
M 5 HOH C 12 412 40 HOH HOH . 
M 5 HOH C 13 413 26 HOH HOH . 
M 5 HOH C 14 414 52 HOH HOH . 
M 5 HOH C 15 415 20 HOH HOH . 
M 5 HOH C 16 416 15 HOH HOH . 
M 5 HOH C 17 417 35 HOH HOH . 
M 5 HOH C 18 418 4 HOH HOH . 
M 5 HOH C 19 419 30 HOH HOH . 
M 5 HOH C 20 420 38 HOH HOH . 
M 5 HOH C 21 421 45 HOH HOH . 
M 5 HOH C 22 422 59 HOH HOH . 
M 5 HOH C 23 423 34 HOH HOH . 
M 5 HOH C 24 424 64 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -41.335 
_atom_site.Cartn_y               12.228 
_atom_site.Cartn_z               -16.618 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#