data_5VBZ
#
_model_server_result.job_id            DHpot0FGJDcqHrWTtNSRyQ 
_model_server_result.datetime_utc      '2024-11-05 05:43:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    5VBZ 
#
_exptl.entry_id    5VBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              359.367 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VBZ 
_cell.length_a            61.84 
_cell.length_b            75.44 
_cell.length_c            93.63 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1 
B,F,G,L 2 1 
C,H,I,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 77 C CYS 72 1_555 H S24 92V . C 92V 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc1 A OG SER 22 A SER 17 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc2 A OG1 THR 40 A THR 35 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc3 D O1G GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc4 D O1B GNP . A GNP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc5 E MG MG . A MG 202 1_555 K O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc6 E MG MG . A MG 202 1_555 K O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc7 B OG SER 22 B SER 17 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc8 F O3G GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc9 F O2B GNP . B GNP 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc10 G MG MG . B MG 202 1_555 L O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 G MG MG . B MG 202 1_555 L O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc12 G MG MG . B MG 202 1_555 L O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc13 C OG SER 22 C SER 17 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc14 C O THR 40 C THR 35 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc15 C OG1 THR 40 C THR 35 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc16 I O3G GNP . C GNP 302 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc17 I O2B GNP . C GNP 302 1_555 J MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc18 J MG MG . C MG 303 1_555 M O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'C15 H16 F3 N3 O2 S' 
_chem_comp.formula_weight    359.367 
_chem_comp.id                92V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C09 92V doub 1 n y 
C10 C11 92V sing 2 n y 
C13 O12 92V sing 3 n n 
C21 C22 92V sing 4 n n 
C21 N20 92V sing 5 n n 
C22 C23 92V sing 6 n n 
C01 C02 92V doub 7 n y 
C01 C05 92V sing 8 n y 
C01 C18 92V sing 9 n n 
C02 C14 92V sing 10 n n 
C02 N03 92V sing 11 n y 
C05 N04 92V doub 12 n y 
C06 C07 92V sing 13 n y 
C06 C11 92V doub 14 n y 
C06 N03 92V sing 15 n n 
C07 C08 92V doub 16 n y 
C08 C09 92V sing 17 n y 
C09 O12 92V sing 18 n n 
C14 F15 92V sing 19 n n 
C14 F16 92V sing 20 n n 
C14 F17 92V sing 21 n n 
C18 N20 92V sing 22 n n 
C18 O19 92V doub 23 n n 
C23 S24 92V sing 24 n n 
N03 N04 92V sing 25 n y 
C10 H101 92V sing 26 n n 
C13 H132 92V sing 27 n n 
C13 H131 92V sing 28 n n 
C13 H133 92V sing 29 n n 
C21 H212 92V sing 30 n n 
C21 H211 92V sing 31 n n 
C22 H221 92V sing 32 n n 
C22 H222 92V sing 33 n n 
C05 H051 92V sing 34 n n 
C07 H071 92V sing 35 n n 
C08 H081 92V sing 36 n n 
C11 H111 92V sing 37 n n 
C23 H232 92V sing 38 n n 
C23 H231 92V sing 39 n n 
N20 H201 92V sing 40 n n 
S24 H1 92V sing 41 n n 
#
_atom_sites.entry_id                     5VBZ 
_atom_sites.fract_transf_matrix[1][1]    0.016171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GNP A 1 201 2 GNP GNP . 
E 3 MG A 1 202 2 MG MG . 
F 2 GNP B 1 201 1 GNP GNP . 
G 3 MG B 1 202 1 MG MG . 
H 4 92V C 1 301 301 92V LIG . 
I 2 GNP C 1 302 3 GNP GNP . 
J 3 MG C 1 303 3 MG MG . 
K 5 HOH A 1 301 9 HOH HOH . 
K 5 HOH A 2 302 54 HOH HOH . 
K 5 HOH A 3 303 55 HOH HOH . 
K 5 HOH A 4 304 56 HOH HOH . 
K 5 HOH A 5 305 18 HOH HOH . 
K 5 HOH A 6 306 53 HOH HOH . 
K 5 HOH A 7 307 8 HOH HOH . 
K 5 HOH A 8 308 28 HOH HOH . 
K 5 HOH A 9 309 25 HOH HOH . 
K 5 HOH A 10 310 27 HOH HOH . 
K 5 HOH A 11 311 1 HOH HOH . 
K 5 HOH A 12 312 42 HOH HOH . 
K 5 HOH A 13 313 21 HOH HOH . 
K 5 HOH A 14 314 7 HOH HOH . 
K 5 HOH A 15 315 43 HOH HOH . 
K 5 HOH A 16 316 23 HOH HOH . 
K 5 HOH A 17 317 22 HOH HOH . 
K 5 HOH A 18 318 62 HOH HOH . 
K 5 HOH A 19 319 19 HOH HOH . 
K 5 HOH A 20 320 41 HOH HOH . 
K 5 HOH A 21 321 17 HOH HOH . 
K 5 HOH A 22 322 51 HOH HOH . 
L 5 HOH B 1 301 33 HOH HOH . 
L 5 HOH B 2 302 50 HOH HOH . 
L 5 HOH B 3 303 46 HOH HOH . 
L 5 HOH B 4 304 31 HOH HOH . 
L 5 HOH B 5 305 61 HOH HOH . 
L 5 HOH B 6 306 24 HOH HOH . 
L 5 HOH B 7 307 11 HOH HOH . 
L 5 HOH B 8 308 10 HOH HOH . 
L 5 HOH B 9 309 63 HOH HOH . 
L 5 HOH B 10 310 47 HOH HOH . 
L 5 HOH B 11 311 49 HOH HOH . 
L 5 HOH B 12 312 58 HOH HOH . 
L 5 HOH B 13 313 32 HOH HOH . 
L 5 HOH B 14 314 13 HOH HOH . 
L 5 HOH B 15 315 44 HOH HOH . 
L 5 HOH B 16 316 48 HOH HOH . 
M 5 HOH C 1 401 3 HOH HOH . 
M 5 HOH C 2 402 36 HOH HOH . 
M 5 HOH C 3 403 2 HOH HOH . 
M 5 HOH C 4 404 14 HOH HOH . 
M 5 HOH C 5 405 6 HOH HOH . 
M 5 HOH C 6 406 57 HOH HOH . 
M 5 HOH C 7 407 60 HOH HOH . 
M 5 HOH C 8 408 66 HOH HOH . 
M 5 HOH C 9 409 39 HOH HOH . 
M 5 HOH C 10 410 37 HOH HOH . 
M 5 HOH C 11 411 29 HOH HOH . 
M 5 HOH C 12 412 40 HOH HOH . 
M 5 HOH C 13 413 26 HOH HOH . 
M 5 HOH C 14 414 52 HOH HOH . 
M 5 HOH C 15 415 20 HOH HOH . 
M 5 HOH C 16 416 15 HOH HOH . 
M 5 HOH C 17 417 35 HOH HOH . 
M 5 HOH C 18 418 4 HOH HOH . 
M 5 HOH C 19 419 30 HOH HOH . 
M 5 HOH C 20 420 38 HOH HOH . 
M 5 HOH C 21 421 45 HOH HOH . 
M 5 HOH C 22 422 59 HOH HOH . 
M 5 HOH C 23 423 34 HOH HOH . 
M 5 HOH C 24 424 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 92V . . . H 4 8.147 15.076 -6.557 1 20.74 ? C10 92V 301 C 1 
HETATM 2 C C13 92V . . . H 4 9.141 14.905 -9.949 1 24.6 ? C13 92V 301 C 1 
HETATM 3 C C21 92V . . . H 4 0.378 19.043 -2.387 1 27.42 ? C21 92V 301 C 1 
HETATM 4 C C22 92V . . . H 4 -0.21 17.82 -1.601 1 29.09 ? C22 92V 301 C 1 
HETATM 5 C C01 92V . . . H 4 3.429 17.868 -4.495 1 27.23 ? C01 92V 301 C 1 
HETATM 6 C C02 92V . . . H 4 3.875 16.967 -5.384 1 28.04 ? C02 92V 301 C 1 
HETATM 7 C C05 92V . . . H 4 4.55 18.581 -3.993 1 25.5 ? C05 92V 301 C 1 
HETATM 8 C C06 92V . . . H 4 6.133 16.351 -6.241 1 18.8 ? C06 92V 301 C 1 
HETATM 9 C C07 92V . . . H 4 5.86 16.255 -7.594 1 17.59 ? C07 92V 301 C 1 
HETATM 10 C C08 92V . . . H 4 6.714 15.556 -8.429 1 21.52 ? C08 92V 301 C 1 
HETATM 11 C C09 92V . . . H 4 7.864 14.975 -7.918 1 23.07 ? C09 92V 301 C 1 
HETATM 12 C C11 92V . . . H 4 7.29 15.77 -5.716 1 17.48 ? C11 92V 301 C 1 
HETATM 13 C C14 92V . . . H 4 3.02 15.983 -6.132 1 31.92 ? C14 92V 301 C 1 
HETATM 14 C C18 92V . . . H 4 1.98 18.139 -4.067 1 23.05 ? C18 92V 301 C 1 
HETATM 15 C C23 92V . . . H 4 -1.652 18.041 -1.243 1 30.78 ? C23 92V 301 C 1 
HETATM 16 F F15 92V . . . H 4 2.648 16.475 -7.288 1 32.59 ? F15 92V 301 C 1 
HETATM 17 F F16 92V . . . H 4 3.671 14.843 -6.317 1 32.6 ? F16 92V 301 C 1 
HETATM 18 F F17 92V . . . H 4 1.933 15.706 -5.379 1 32.27 ? F17 92V 301 C 1 
HETATM 19 N N03 92V . . . H 4 5.239 17.086 -5.424 1 23.62 ? N03 92V 301 C 1 
HETATM 20 N N04 92V . . . H 4 5.638 18.078 -4.589 1 24.63 ? N04 92V 301 C 1 
HETATM 21 N N20 92V . . . H 4 1.731 18.763 -2.812 1 23.57 ? N20 92V 301 C 1 
HETATM 22 O O12 92V . . . H 4 8.716 14.263 -8.764 1 25.72 ? O12 92V 301 C 1 
HETATM 23 O O19 92V . . . H 4 1.032 17.826 -4.826 1 21.86 ? O19 92V 301 C 1 
HETATM 24 S S24 92V . . . H 4 -2.199 16.73 -0.239 1 34.03 ? S24 92V 301 C 1 
HETATM 25 H H101 92V . . . H 4 8.949 14.66 -6.197 1 24.88 ? H101 92V 301 C 1 
HETATM 26 H H132 92V . . . H 4 9.376 14.229 -10.623 1 29.53 ? H132 92V 301 C 1 
HETATM 27 H H131 92V . . . H 4 9.935 15.464 -9.752 1 29.53 ? H131 92V 301 C 1 
HETATM 28 H H133 92V . . . H 4 8.389 15.494 -10.306 1 29.53 ? H133 92V 301 C 1 
HETATM 29 H H212 92V . . . H 4 -0.184 19.229 -3.179 1 32.91 ? H212 92V 301 C 1 
HETATM 30 H H211 92V . . . H 4 0.38 19.818 -1.812 1 32.91 ? H211 92V 301 C 1 
HETATM 31 H H221 92V . . . H 4 -0.137 17.006 -2.169 1 34.91 ? H221 92V 301 C 1 
HETATM 32 H H222 92V . . . H 4 0.332 17.683 -0.746 1 34.91 ? H222 92V 301 C 1 
HETATM 33 H H051 92V . . . H 4 4.529 19.316 -3.328 1 30.6 ? H051 92V 301 C 1 
HETATM 34 H H071 92V . . . H 4 5.031 16.679 -7.967 1 21.11 ? H071 92V 301 C 1 
HETATM 35 H H081 92V . . . H 4 6.52 15.485 -9.351 1 25.82 ? H081 92V 301 C 1 
HETATM 36 H H111 92V . . . H 4 7.496 15.848 -4.733 1 20.97 ? H111 92V 301 C 1 
HETATM 37 H H201 92V . . . H 4 2.462 19.002 -2.248 1 28.28 ? H201 92V 301 C 1 
HETATM 38 H H232 92V . . . H 4 -2.185 18.071 -2.053 1 36.93 ? H232 92V 301 C 1 
HETATM 39 H H231 92V . . . H 4 -1.749 18.915 -0.74 1 36.93 ? H231 92V 301 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#