data_5VC0 # _model_server_result.job_id s3MU8SbeAymchlgZKuMFZw _model_server_result.datetime_utc '2024-11-23 03:52:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5VC0 # _exptl.entry_id 5VC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 720.944 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RITONAVIR _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VC0 _cell.length_a 76.579 _cell.length_b 100.069 _cell.length_c 125.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -76.579 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.579 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N5 RIT . A RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? # _chem_comp.formula 'C37 H48 N6 O5 S2' _chem_comp.formula_weight 720.944 _chem_comp.id RIT _chem_comp.mon_nstd_flag . _chem_comp.name RITONAVIR _chem_comp.type peptide-like _chem_comp.pdbx_synonyms A-84538 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RIT doub 357 n y C1 N5 RIT sing 358 n y C1 H1 RIT sing 359 n n C2 S3 RIT sing 360 n y C2 C6 RIT sing 361 n n S3 C4 RIT sing 362 n y C4 N5 RIT doub 363 n y C4 H4 RIT sing 364 n n C6 O7 RIT sing 365 n n C6 H61 RIT sing 366 n n C6 H62A RIT sing 367 n n O7 C10 RIT sing 368 n n C10 N11 RIT sing 369 n n C10 O24 RIT doub 370 n n N11 C12 RIT sing 371 n n N11 H11 RIT sing 372 n n C12 C13 RIT sing 373 n n C12 C26 RIT sing 374 n n C12 H12 RIT sing 375 n n C13 C14 RIT sing 376 n n C13 O41 RIT sing 377 n n C13 H13 RIT sing 378 n n C14 C15 RIT sing 379 n n C14 H141 RIT sing 380 n n C14 H142 RIT sing 381 n n C15 C44 RIT sing 382 n n C15 N58 RIT sing 383 n n C15 H15 RIT sing 384 n n C18 C19 RIT sing 385 n n C18 N58 RIT sing 386 n n C18 O61 RIT doub 387 n n C19 N20 RIT sing 388 n n C19 C62 RIT sing 389 n n C19 H19 RIT sing 390 n n N20 C21 RIT sing 391 n n N20 H20 RIT sing 392 n n C21 N74 RIT sing 393 n n C21 O76 RIT doub 394 n n C26 C28 RIT sing 395 n n C26 H261 RIT sing 396 n n C26 H262 RIT sing 397 n n C28 C31 RIT doub 398 n y C28 C35 RIT sing 399 n y C31 C32 RIT sing 400 n y C31 H31 RIT sing 401 n n C32 C33 RIT doub 402 n y C32 H32 RIT sing 403 n n C33 C34 RIT sing 404 n y C33 H33 RIT sing 405 n n C34 C35 RIT doub 406 n y C34 H34 RIT sing 407 n n C35 H35 RIT sing 408 n n O41 HO4 RIT sing 409 n n C44 C45 RIT sing 410 n n C44 H441 RIT sing 411 n n C44 H442 RIT sing 412 n n C45 C48 RIT doub 413 n y C45 C52 RIT sing 414 n y C48 C49 RIT sing 415 n y C48 H48 RIT sing 416 n n C49 C50 RIT doub 417 n y C49 H49 RIT sing 418 n n C50 C51 RIT sing 419 n y C50 H50 RIT sing 420 n n C51 C52 RIT doub 421 n y C51 H51 RIT sing 422 n n C52 H52 RIT sing 423 n n N58 H58 RIT sing 424 n n C62 C64 RIT sing 425 n n C62 C68 RIT sing 426 n n C62 H62 RIT sing 427 n n C64 H641 RIT sing 428 n n C64 H642 RIT sing 429 n n C64 H643 RIT sing 430 n n C68 H681 RIT sing 431 n n C68 H682 RIT sing 432 n n C68 H683 RIT sing 433 n n N74 C75 RIT sing 434 n n N74 C95 RIT sing 435 n n C75 C77 RIT sing 436 n n C75 H751 RIT sing 437 n n C75 H752 RIT sing 438 n n C77 C80 RIT doub 439 n y C77 N83 RIT sing 440 n y C80 S81 RIT sing 441 n y C80 H80 RIT sing 442 n n S81 C82 RIT sing 443 n y C82 N83 RIT doub 444 n y C82 C85 RIT sing 445 n n C85 C86 RIT sing 446 n n C85 C90 RIT sing 447 n n C85 H85 RIT sing 448 n n C86 H861 RIT sing 449 n n C86 H862 RIT sing 450 n n C86 H863 RIT sing 451 n n C90 H901 RIT sing 452 n n C90 H902 RIT sing 453 n n C90 H903 RIT sing 454 n n C95 H951 RIT sing 455 n n C95 H952 RIT sing 456 n n C95 H953 RIT sing 457 n n # _atom_sites.entry_id 5VC0 _atom_sites.fract_transf_matrix[1][1] 0.013058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 RIT A 1 602 602 RIT RIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIT . . . C 3 -18.075 -23.105 -7.712 1 71.4 ? C1 RIT 602 A 1 HETATM 2 C C2 RIT . . . C 3 -19.356 -22.697 -7.742 1 71.89 ? C2 RIT 602 A 1 HETATM 3 S S3 RIT . . . C 3 -19.677 -22.455 -9.383 1 67.99 ? S3 RIT 602 A 1 HETATM 4 C C4 RIT . . . C 3 -18.127 -22.896 -9.911 1 67.46 ? C4 RIT 602 A 1 HETATM 5 N N5 RIT . . . C 3 -17.453 -23.214 -8.808 1 66.3 ? N5 RIT 602 A 1 HETATM 6 C C6 RIT . . . C 3 -20.345 -22.467 -6.586 1 75.58 ? C6 RIT 602 A 1 HETATM 7 O O7 RIT . . . C 3 -20.947 -21.164 -6.756 1 77.63 ? O7 RIT 602 A 1 HETATM 8 C C10 RIT . . . C 3 -20.292 -20.111 -6.042 1 88.17 ? C10 RIT 602 A 1 HETATM 9 O O24 RIT . . . C 3 -19.206 -20.314 -5.539 1 95.14 ? O24 RIT 602 A 1 HETATM 10 N N11 RIT . . . C 3 -21.1 -19.054 -5.42 1 94.57 ? N11 RIT 602 A 1 HETATM 11 C C12 RIT . . . C 3 -21.825 -18.046 -6.205 1 92.99 ? C12 RIT 602 A 1 HETATM 12 C C13 RIT . . . C 3 -21.083 -16.682 -6.216 1 91.86 ? C13 RIT 602 A 1 HETATM 13 C C14 RIT . . . C 3 -19.917 -16.726 -7.207 1 96.59 ? C14 RIT 602 A 1 HETATM 14 C C15 RIT . . . C 3 -20.105 -17.306 -8.611 1 92 ? C15 RIT 602 A 1 HETATM 15 C C26 RIT . . . C 3 -23.237 -17.927 -5.611 1 89.42 ? C26 RIT 602 A 1 HETATM 16 C C28 RIT . . . C 3 -23.789 -19.289 -5.166 1 86.61 ? C28 RIT 602 A 1 HETATM 17 C C31 RIT . . . C 3 -24.491 -20.08 -6.077 1 85.04 ? C31 RIT 602 A 1 HETATM 18 C C32 RIT . . . C 3 -24.994 -21.316 -5.655 1 84.28 ? C32 RIT 602 A 1 HETATM 19 C C33 RIT . . . C 3 -24.789 -21.763 -4.341 1 84.52 ? C33 RIT 602 A 1 HETATM 20 C C34 RIT . . . C 3 -24.081 -20.969 -3.434 1 85.39 ? C34 RIT 602 A 1 HETATM 21 C C35 RIT . . . C 3 -23.582 -19.729 -3.851 1 87.47 ? C35 RIT 602 A 1 HETATM 22 O O41 RIT . . . C 3 -20.603 -16.415 -5.141 1 94.27 ? O41 RIT 602 A 1 HETATM 23 C C44 RIT . . . C 3 -18.728 -17.277 -9.264 1 90.77 ? C44 RIT 602 A 1 HETATM 24 C C45 RIT . . . C 3 -18.857 -18.016 -10.583 1 94.99 ? C45 RIT 602 A 1 HETATM 25 C C48 RIT . . . C 3 -19.247 -17.315 -11.731 1 96.52 ? C48 RIT 602 A 1 HETATM 26 C C49 RIT . . . C 3 -19.383 -18.01 -12.936 1 105.02 ? C49 RIT 602 A 1 HETATM 27 C C50 RIT . . . C 3 -19.129 -19.39 -12.968 1 105.78 ? C50 RIT 602 A 1 HETATM 28 C C51 RIT . . . C 3 -18.737 -20.078 -11.813 1 105.25 ? C51 RIT 602 A 1 HETATM 29 C C52 RIT . . . C 3 -18.603 -19.389 -10.606 1 101 ? C52 RIT 602 A 1 HETATM 30 N N58 RIT . . . C 3 -20.99 -16.395 -9.327 1 91.2 ? N58 RIT 602 A 1 HETATM 31 N N20 RIT . . . C 3 -23.456 -15.782 -11.98 1 122.45 ? N20 RIT 602 A 1 HETATM 32 C C19 RIT . . . C 3 -23.055 -15.606 -10.572 1 102.7 ? C19 RIT 602 A 1 HETATM 33 C C18 RIT . . . C 3 -22.295 -16.767 -9.876 1 99.21 ? C18 RIT 602 A 1 HETATM 34 O O61 RIT . . . C 3 -22.714 -17.897 -9.758 1 100.72 ? O61 RIT 602 A 1 HETATM 35 C C62 RIT . . . C 3 -24.276 -15.082 -9.777 1 104.97 ? C62 RIT 602 A 1 HETATM 36 C C64 RIT . . . C 3 -24.709 -13.682 -10.269 1 107.22 ? C64 RIT 602 A 1 HETATM 37 C C68 RIT . . . C 3 -25.445 -16.085 -9.814 1 105.99 ? C68 RIT 602 A 1 HETATM 38 C C21 RIT . . . C 3 -22.548 -15.397 -13.083 1 138.98 ? C21 RIT 602 A 1 HETATM 39 N N74 RIT . . . C 3 -22.997 -15.56 -14.476 1 139.55 ? N74 RIT 602 A 1 HETATM 40 C C75 RIT . . . C 3 -24.351 -16.048 -14.76 1 147.82 ? C75 RIT 602 A 1 HETATM 41 O O76 RIT . . . C 3 -21.432 -14.97 -12.853 1 145.23 ? O76 RIT 602 A 1 HETATM 42 C C77 RIT . . . C 3 -25.31 -14.843 -14.614 1 160.79 ? C77 RIT 602 A 1 HETATM 43 C C80 RIT . . . C 3 -26.699 -14.984 -14.724 1 168.85 ? C80 RIT 602 A 1 HETATM 44 S S81 RIT . . . C 3 -27.297 -13.407 -14.495 1 175.2 ? S81 RIT 602 A 1 HETATM 45 C C82 RIT . . . C 3 -25.816 -12.629 -14.27 1 173 ? C82 RIT 602 A 1 HETATM 46 N N83 RIT . . . C 3 -24.877 -13.587 -14.374 1 169.72 ? N83 RIT 602 A 1 HETATM 47 C C85 RIT . . . C 3 -25.594 -11.121 -13.998 1 171.92 ? C85 RIT 602 A 1 HETATM 48 C C86 RIT . . . C 3 -26.434 -10.221 -14.927 1 162.7 ? C86 RIT 602 A 1 HETATM 49 C C90 RIT . . . C 3 -25.836 -10.759 -12.518 1 168.63 ? C90 RIT 602 A 1 HETATM 50 C C95 RIT . . . C 3 -22.116 -15.199 -15.591 1 142.71 ? C95 RIT 602 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #