data_5VC3 # _model_server_result.job_id OIdkMpPoj81_g1th5ie3Fw _model_server_result.datetime_utc '2025-07-27 10:52:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5VC3 # _exptl.entry_id 5VC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 530.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.43 _cell.angle_gamma 90 _cell.entry_id 5VC3 _cell.length_a 50.52 _cell.length_b 45.23 _cell.length_c 60.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H29 Cl2 N5 O3' _chem_comp.formula_weight 530.446 _chem_comp.id DB8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Bosutinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAV DB8 sing 83 n n CAA HAA DB8 sing 84 n n CAA HAAA DB8 sing 85 n n CAA HAAB DB8 sing 86 n n CAX O02 DB8 sing 87 n n C01 O02 DB8 sing 88 n n NBH CAC DB8 sing 89 n n CAM CAC DB8 sing 90 n n CAC HAC DB8 sing 91 n n CAC HACA DB8 sing 92 n n CAG NAD DB8 trip 93 n n CL1 CAY DB8 sing 94 n n CL2 CAZ DB8 sing 95 n n CBA CAG DB8 sing 96 n n CBA CAH DB8 doub 97 n y NAT CAH DB8 sing 98 n y CAH HAH DB8 sing 99 n n CAI CAZ DB8 doub 100 n y CAI CAY DB8 sing 101 n y CAI HAI DB8 sing 102 n n CBB CAJ DB8 doub 103 n y CAX CAJ DB8 sing 104 n y CAJ HAJ DB8 sing 105 n n CBD CAK DB8 doub 106 n y CAK CBF DB8 sing 107 n y CAK HAK DB8 sing 108 n n CBC CAL DB8 doub 109 n y CAL CBG DB8 sing 110 n y CAL HAL DB8 sing 111 n n CAM CAN DB8 sing 112 n n CAM HAM DB8 sing 113 n n CAM HAMA DB8 sing 114 n n OAW CAN DB8 sing 115 n n CAN HAN DB8 sing 116 n n CAN HANA DB8 sing 117 n n CAO NBI DB8 sing 118 n n CAO HAO DB8 sing 119 n n CAO HAOA DB8 sing 120 n n CAO HAOB DB8 sing 121 n n NBH CAP DB8 sing 122 n n CAR CAP DB8 sing 123 n n CAP HAP DB8 sing 124 n n CAP HAPA DB8 sing 125 n n CAS CAQ DB8 sing 126 n n CAQ NBH DB8 sing 127 n n CAQ HAQ DB8 sing 128 n n CAQ HAQA DB8 sing 129 n n NBI CAR DB8 sing 130 n n CAR HAR DB8 sing 131 n n CAR HARA DB8 sing 132 n n CAS NBI DB8 sing 133 n n CAS HAS DB8 sing 134 n n CAS HASA DB8 sing 135 n n CBF NAT DB8 doub 136 n y CBB NAU DB8 sing 137 n n NAU CBE DB8 sing 138 n n NAU HNAU DB8 sing 139 n n OAV CBC DB8 sing 140 n n OAW CBD DB8 sing 141 n n CAY CAX DB8 doub 142 n y CAZ CBB DB8 sing 143 n y CBE CBA DB8 sing 144 n y CBC CBD DB8 sing 145 n y CBG CBE DB8 doub 146 n y CBG CBF DB8 sing 147 n y C01 H01 DB8 sing 148 n n C01 H01A DB8 sing 149 n n C01 H01B DB8 sing 150 n n # _atom_sites.entry_id 5VC3 _atom_sites.fract_transf_matrix[1][1] 0.019794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DB8 A 1 601 1 DB8 DB8 . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 3 EDO A 1 604 3 EDO EDO . F 3 EDO A 1 605 4 EDO EDO . G 4 CL A 1 606 1 CL CL . H 5 HOH A 1 701 59 HOH HOH . H 5 HOH A 2 702 44 HOH HOH . H 5 HOH A 3 703 6 HOH HOH . H 5 HOH A 4 704 39 HOH HOH . H 5 HOH A 5 705 30 HOH HOH . H 5 HOH A 6 706 23 HOH HOH . H 5 HOH A 7 707 4 HOH HOH . H 5 HOH A 8 708 50 HOH HOH . H 5 HOH A 9 709 73 HOH HOH . H 5 HOH A 10 710 67 HOH HOH . H 5 HOH A 11 711 60 HOH HOH . H 5 HOH A 12 712 28 HOH HOH . H 5 HOH A 13 713 51 HOH HOH . H 5 HOH A 14 714 25 HOH HOH . H 5 HOH A 15 715 24 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 33 HOH HOH . H 5 HOH A 18 718 34 HOH HOH . H 5 HOH A 19 719 63 HOH HOH . H 5 HOH A 20 720 36 HOH HOH . H 5 HOH A 21 721 37 HOH HOH . H 5 HOH A 22 722 5 HOH HOH . H 5 HOH A 23 723 21 HOH HOH . H 5 HOH A 24 724 11 HOH HOH . H 5 HOH A 25 725 7 HOH HOH . H 5 HOH A 26 726 41 HOH HOH . H 5 HOH A 27 727 20 HOH HOH . H 5 HOH A 28 728 68 HOH HOH . H 5 HOH A 29 729 12 HOH HOH . H 5 HOH A 30 730 62 HOH HOH . H 5 HOH A 31 731 10 HOH HOH . H 5 HOH A 32 732 13 HOH HOH . H 5 HOH A 33 733 42 HOH HOH . H 5 HOH A 34 734 54 HOH HOH . H 5 HOH A 35 735 26 HOH HOH . H 5 HOH A 36 736 58 HOH HOH . H 5 HOH A 37 737 2 HOH HOH . H 5 HOH A 38 738 19 HOH HOH . H 5 HOH A 39 739 3 HOH HOH . H 5 HOH A 40 740 1 HOH HOH . H 5 HOH A 41 741 43 HOH HOH . H 5 HOH A 42 742 14 HOH HOH . H 5 HOH A 43 743 18 HOH HOH . H 5 HOH A 44 744 49 HOH HOH . H 5 HOH A 45 745 53 HOH HOH . H 5 HOH A 46 746 22 HOH HOH . H 5 HOH A 47 747 17 HOH HOH . H 5 HOH A 48 748 15 HOH HOH . H 5 HOH A 49 749 70 HOH HOH . H 5 HOH A 50 750 27 HOH HOH . H 5 HOH A 51 751 45 HOH HOH . H 5 HOH A 52 752 74 HOH HOH . H 5 HOH A 53 753 72 HOH HOH . H 5 HOH A 54 754 64 HOH HOH . H 5 HOH A 55 755 9 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . H 5 HOH A 57 757 31 HOH HOH . H 5 HOH A 58 758 38 HOH HOH . H 5 HOH A 59 759 32 HOH HOH . H 5 HOH A 60 760 66 HOH HOH . H 5 HOH A 61 761 46 HOH HOH . H 5 HOH A 62 762 8 HOH HOH . H 5 HOH A 63 763 29 HOH HOH . H 5 HOH A 64 764 71 HOH HOH . H 5 HOH A 65 765 69 HOH HOH . H 5 HOH A 66 766 65 HOH HOH . H 5 HOH A 67 767 57 HOH HOH . H 5 HOH A 68 768 52 HOH HOH . H 5 HOH A 69 769 35 HOH HOH . H 5 HOH A 70 770 40 HOH HOH . H 5 HOH A 71 771 47 HOH HOH . H 5 HOH A 72 772 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA DB8 . . . B 2 -4.308 6.508 7.709 1 31.02 ? CAA DB8 601 A 1 HETATM 2 O O02 DB8 . . . B 2 1.89 1.303 10.477 1 26.74 ? O02 DB8 601 A 1 HETATM 3 C CAC DB8 . . . B 2 -9.186 8.986 9.821 1 64.86 ? CAC DB8 601 A 1 HETATM 4 N NAD DB8 . . . B 2 -2.091 1.024 14.047 1 63.96 ? NAD DB8 601 A 1 HETATM 5 CL CL1 DB8 . . . B 2 1.243 -1.504 10.997 1 29.76 ? CL1 DB8 601 A 1 HETATM 6 CL CL2 DB8 . . . B 2 -3.858 0.097 11.329 1 23.28 ? CL2 DB8 601 A 1 HETATM 7 C CAG DB8 . . . B 2 -2.727 1.892 13.647 1 55.59 ? CAG DB8 601 A 1 HETATM 8 C CAH DB8 . . . B 2 -4.285 3.486 14.147 1 41.78 ? CAH DB8 601 A 1 HETATM 9 C CAI DB8 . . . B 2 -1.255 -0.552 11.131 1 25.97 ? CAI DB8 601 A 1 HETATM 10 C CAJ DB8 . . . B 2 -0.423 2.086 10.631 1 29.76 ? CAJ DB8 601 A 1 HETATM 11 C CAK DB8 . . . B 2 -5.996 6.094 12.283 1 33.24 ? CAK DB8 601 A 1 HETATM 12 C CAL DB8 . . . B 2 -4.413 5.017 10.22 1 37.69 ? CAL DB8 601 A 1 HETATM 13 C CAM DB8 . . . B 2 -8.445 9.462 11.099 1 26.36 ? CAM DB8 601 A 1 HETATM 14 C CAN DB8 . . . B 2 -7.633 8.329 11.771 1 27.65 ? CAN DB8 601 A 1 HETATM 15 C CAO DB8 . . . B 2 -13.082 12.704 7.783 1 65.55 ? CAO DB8 601 A 1 HETATM 16 C CAP DB8 . . . B 2 -9.744 10.833 8.188 1 64.88 ? CAP DB8 601 A 1 HETATM 17 C CAQ DB8 . . . B 2 -11.547 9.42 9.048 1 64.8 ? CAQ DB8 601 A 1 HETATM 18 C CAR DB8 . . . B 2 -10.724 12.011 7.98 1 64.92 ? CAR DB8 601 A 1 HETATM 19 C CAS DB8 . . . B 2 -12.564 10.578 8.916 1 65.17 ? CAS DB8 601 A 1 HETATM 20 N NAT DB8 . . . B 2 -5.084 4.516 13.803 1 38.07 ? NAT DB8 601 A 1 HETATM 21 N NAU DB8 . . . B 2 -2.694 2.841 10.798 1 37.08 ? NAU DB8 601 A 1 HETATM 22 O OAV DB8 . . . B 2 -5.382 6.665 8.683 1 32.77 ? OAV DB8 601 A 1 HETATM 23 O OAW DB8 . . . B 2 -6.903 7.683 10.71 1 30.31 ? OAW DB8 601 A 1 HETATM 24 C CAX DB8 . . . B 2 0.546 1.063 10.675 1 26.5 ? CAX DB8 601 A 1 HETATM 25 C CAY DB8 . . . B 2 0.112 -0.254 10.926 1 25.15 ? CAY DB8 601 A 1 HETATM 26 C CAZ DB8 . . . B 2 -2.215 0.478 11.076 1 29.88 ? CAZ DB8 601 A 1 HETATM 27 C CBA DB8 . . . B 2 -3.452 2.878 13.184 1 44.23 ? CBA DB8 601 A 1 HETATM 28 C CBB DB8 . . . B 2 -1.795 1.811 10.834 1 33.02 ? CBB DB8 601 A 1 HETATM 29 C CBC DB8 . . . B 2 -5.273 6.102 9.944 1 34.47 ? CBC DB8 601 A 1 HETATM 30 C CBD DB8 . . . B 2 -6.069 6.631 10.988 1 33.41 ? CBD DB8 601 A 1 HETATM 31 C CBE DB8 . . . B 2 -3.466 3.364 11.828 1 40.44 ? CBE DB8 601 A 1 HETATM 32 C CBF DB8 . . . B 2 -5.135 5.015 12.55 1 35.02 ? CBF DB8 601 A 1 HETATM 33 C CBG DB8 . . . B 2 -4.326 4.459 11.519 1 37.7 ? CBG DB8 601 A 1 HETATM 34 N NBH DB8 . . . B 2 -10.193 9.981 9.33 1 64.43 ? NBH DB8 601 A 1 HETATM 35 N NBI DB8 . . . B 2 -12.144 11.552 7.862 1 65.02 ? NBI DB8 601 A 1 HETATM 36 C C01 DB8 . . . B 2 2.324 2.583 9.956 1 26.66 ? C01 DB8 601 A 1 HETATM 37 H HAA DB8 . . . B 2 -3.74 7.31 7.716 1 37.23 ? HAA DB8 601 A 1 HETATM 38 H HAAA DB8 . . . B 2 -4.692 6.388 6.815 1 37.23 ? HAAA DB8 601 A 1 HETATM 39 H HAAB DB8 . . . B 2 -3.766 5.721 7.942 1 37.23 ? HAAB DB8 601 A 1 HETATM 40 H HAC DB8 . . . B 2 -9.647 8.14 10.019 1 77.83 ? HAC DB8 601 A 1 HETATM 41 H HACA DB8 . . . B 2 -8.525 8.828 9.111 1 77.83 ? HACA DB8 601 A 1 HETATM 42 H HAH DB8 . . . B 2 -4.282 3.158 15.072 1 50.14 ? HAH DB8 601 A 1 HETATM 43 H HAI DB8 . . . B 2 -1.536 -1.476 11.303 1 31.16 ? HAI DB8 601 A 1 HETATM 44 H HAJ DB8 . . . B 2 -0.14 3.008 10.461 1 35.71 ? HAJ DB8 601 A 1 HETATM 45 H HAK DB8 . . . B 2 -6.548 6.471 13.002 1 39.88 ? HAK DB8 601 A 1 HETATM 46 H HAL DB8 . . . B 2 -3.864 4.643 9.499 1 45.23 ? HAL DB8 601 A 1 HETATM 47 H HAM DB8 . . . B 2 -9.105 9.803 11.74 1 31.64 ? HAM DB8 601 A 1 HETATM 48 H HAMA DB8 . . . B 2 -7.831 10.191 10.856 1 31.64 ? HAMA DB8 601 A 1 HETATM 49 H HAN DB8 . . . B 2 -8.239 7.689 12.204 1 33.18 ? HAN DB8 601 A 1 HETATM 50 H HANA DB8 . . . B 2 -7.009 8.705 12.431 1 33.18 ? HANA DB8 601 A 1 HETATM 51 H HAO DB8 . . . B 2 -13.994 12.374 7.621 1 78.66 ? HAO DB8 601 A 1 HETATM 52 H HAOA DB8 . . . B 2 -12.812 13.296 7.046 1 78.66 ? HAOA DB8 601 A 1 HETATM 53 H HAOB DB8 . . . B 2 -13.06 13.204 8.629 1 78.66 ? HAOB DB8 601 A 1 HETATM 54 H HAP DB8 . . . B 2 -9.711 10.289 7.37 1 77.85 ? HAP DB8 601 A 1 HETATM 55 H HAPA DB8 . . . B 2 -8.847 11.187 8.38 1 77.85 ? HAPA DB8 601 A 1 HETATM 56 H HAQ DB8 . . . B 2 -11.521 8.908 8.209 1 77.76 ? HAQ DB8 601 A 1 HETATM 57 H HAQA DB8 . . . B 2 -11.817 8.828 9.786 1 77.76 ? HAQA DB8 601 A 1 HETATM 58 H HAR DB8 . . . B 2 -10.65 12.625 8.743 1 77.91 ? HAR DB8 601 A 1 HETATM 59 H HARA DB8 . . . B 2 -10.475 12.491 7.158 1 77.91 ? HARA DB8 601 A 1 HETATM 60 H HAS DB8 . . . B 2 -13.444 10.207 8.679 1 78.21 ? HAS DB8 601 A 1 HETATM 61 H HASA DB8 . . . B 2 -12.633 11.045 9.777 1 78.21 ? HASA DB8 601 A 1 HETATM 62 H HNAU DB8 . . . B 2 -2.803 3.243 9.979 1 44.49 ? HNAU DB8 601 A 1 HETATM 63 H H01 DB8 . . . B 2 1.729 3.291 10.29 1 31.99 ? H01 DB8 601 A 1 HETATM 64 H H01A DB8 . . . B 2 2.293 2.565 8.977 1 31.99 ? H01A DB8 601 A 1 HETATM 65 H H01B DB8 . . . B 2 3.243 2.761 10.251 1 31.99 ? H01B DB8 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #