data_5VC3
#
_model_server_result.job_id            u2fDf4ggf3tqVTKdZ3afeA 
_model_server_result.datetime_utc      '2024-11-17 07:58:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5VC3 
#
_exptl.entry_id    5VC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.43 
_cell.angle_gamma         90 
_cell.entry_id            5VC3 
_cell.length_a            50.52 
_cell.length_b            45.23 
_cell.length_c            60.44 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 151 n n 
C1 C2 EDO sing 152 n n 
C1 H11 EDO sing 153 n n 
C1 H12 EDO sing 154 n n 
O1 HO1 EDO sing 155 n n 
C2 O2 EDO sing 156 n n 
C2 H21 EDO sing 157 n n 
C2 H22 EDO sing 158 n n 
O2 HO2 EDO sing 159 n n 
#
_atom_sites.entry_id                     5VC3 
_atom_sites.fract_transf_matrix[1][1]    0.019794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004362 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022109 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016942 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DB8 A 1 601 1 DB8 DB8 . 
C 3 EDO A 1 602 1 EDO EDO . 
D 3 EDO A 1 603 2 EDO EDO . 
E 3 EDO A 1 604 3 EDO EDO . 
F 3 EDO A 1 605 4 EDO EDO . 
G 4 CL A 1 606 1 CL CL . 
H 5 HOH A 1 701 59 HOH HOH . 
H 5 HOH A 2 702 44 HOH HOH . 
H 5 HOH A 3 703 6 HOH HOH . 
H 5 HOH A 4 704 39 HOH HOH . 
H 5 HOH A 5 705 30 HOH HOH . 
H 5 HOH A 6 706 23 HOH HOH . 
H 5 HOH A 7 707 4 HOH HOH . 
H 5 HOH A 8 708 50 HOH HOH . 
H 5 HOH A 9 709 73 HOH HOH . 
H 5 HOH A 10 710 67 HOH HOH . 
H 5 HOH A 11 711 60 HOH HOH . 
H 5 HOH A 12 712 28 HOH HOH . 
H 5 HOH A 13 713 51 HOH HOH . 
H 5 HOH A 14 714 25 HOH HOH . 
H 5 HOH A 15 715 24 HOH HOH . 
H 5 HOH A 16 716 16 HOH HOH . 
H 5 HOH A 17 717 33 HOH HOH . 
H 5 HOH A 18 718 34 HOH HOH . 
H 5 HOH A 19 719 63 HOH HOH . 
H 5 HOH A 20 720 36 HOH HOH . 
H 5 HOH A 21 721 37 HOH HOH . 
H 5 HOH A 22 722 5 HOH HOH . 
H 5 HOH A 23 723 21 HOH HOH . 
H 5 HOH A 24 724 11 HOH HOH . 
H 5 HOH A 25 725 7 HOH HOH . 
H 5 HOH A 26 726 41 HOH HOH . 
H 5 HOH A 27 727 20 HOH HOH . 
H 5 HOH A 28 728 68 HOH HOH . 
H 5 HOH A 29 729 12 HOH HOH . 
H 5 HOH A 30 730 62 HOH HOH . 
H 5 HOH A 31 731 10 HOH HOH . 
H 5 HOH A 32 732 13 HOH HOH . 
H 5 HOH A 33 733 42 HOH HOH . 
H 5 HOH A 34 734 54 HOH HOH . 
H 5 HOH A 35 735 26 HOH HOH . 
H 5 HOH A 36 736 58 HOH HOH . 
H 5 HOH A 37 737 2 HOH HOH . 
H 5 HOH A 38 738 19 HOH HOH . 
H 5 HOH A 39 739 3 HOH HOH . 
H 5 HOH A 40 740 1 HOH HOH . 
H 5 HOH A 41 741 43 HOH HOH . 
H 5 HOH A 42 742 14 HOH HOH . 
H 5 HOH A 43 743 18 HOH HOH . 
H 5 HOH A 44 744 49 HOH HOH . 
H 5 HOH A 45 745 53 HOH HOH . 
H 5 HOH A 46 746 22 HOH HOH . 
H 5 HOH A 47 747 17 HOH HOH . 
H 5 HOH A 48 748 15 HOH HOH . 
H 5 HOH A 49 749 70 HOH HOH . 
H 5 HOH A 50 750 27 HOH HOH . 
H 5 HOH A 51 751 45 HOH HOH . 
H 5 HOH A 52 752 74 HOH HOH . 
H 5 HOH A 53 753 72 HOH HOH . 
H 5 HOH A 54 754 64 HOH HOH . 
H 5 HOH A 55 755 9 HOH HOH . 
H 5 HOH A 56 756 56 HOH HOH . 
H 5 HOH A 57 757 31 HOH HOH . 
H 5 HOH A 58 758 38 HOH HOH . 
H 5 HOH A 59 759 32 HOH HOH . 
H 5 HOH A 60 760 66 HOH HOH . 
H 5 HOH A 61 761 46 HOH HOH . 
H 5 HOH A 62 762 8 HOH HOH . 
H 5 HOH A 63 763 29 HOH HOH . 
H 5 HOH A 64 764 71 HOH HOH . 
H 5 HOH A 65 765 69 HOH HOH . 
H 5 HOH A 66 766 65 HOH HOH . 
H 5 HOH A 67 767 57 HOH HOH . 
H 5 HOH A 68 768 52 HOH HOH . 
H 5 HOH A 69 769 35 HOH HOH . 
H 5 HOH A 70 770 40 HOH HOH . 
H 5 HOH A 71 771 47 HOH HOH . 
H 5 HOH A 72 772 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 0.262 1.384 6.818 1 48.86 ? C1 EDO 602 A 1 
HETATM 2 O O1 EDO . . . C 3 1.344 0.456 6.937 1 49.07 ? O1 EDO 602 A 1 
HETATM 3 C C2 EDO . . . C 3 -0.632 0.962 5.66 1 49.33 ? C2 EDO 602 A 1 
HETATM 4 O O2 EDO . . . C 3 -1.234 2.119 5.067 1 49.48 ? O2 EDO 602 A 1 
HETATM 5 H H11 EDO . . . C 3 0.653 2.388 6.638 1 58.63 ? H11 EDO 602 A 1 
HETATM 6 H H12 EDO . . . C 3 -0.315 1.403 7.744 1 58.63 ? H12 EDO 602 A 1 
HETATM 7 H HO1 EDO . . . C 3 1.916 0.719 7.672 1 58.89 ? HO1 EDO 602 A 1 
HETATM 8 H H21 EDO . . . C 3 -1.41 0.287 6.021 1 59.2 ? H21 EDO 602 A 1 
HETATM 9 H H22 EDO . . . C 3 -0.04 0.431 4.912 1 59.2 ? H22 EDO 602 A 1 
HETATM 10 H HO2 EDO . . . C 3 -1.8 1.847 4.332 1 59.37 ? HO2 EDO 602 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           10 
#