data_5VC5 # _model_server_result.job_id o2QhFCkgHqj65WA1mIf8Lg _model_server_result.datetime_utc '2024-11-24 12:52:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5VC5 # _exptl.entry_id 5VC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2,6-dichlorophenyl)-2-({4-[2-(diethylamino)ethoxy]phenyl}amino)-8-methylpyrido[2,3-d]pyrimidin-7(8H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.97 _cell.angle_gamma 90 _cell.entry_id 5VC5 _cell.length_a 50.53 _cell.length_b 44.4 _cell.length_c 61.98 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H27 Cl2 N5 O2' _chem_comp.formula_weight 512.431 _chem_comp.id 96M _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2,6-dichlorophenyl)-2-({4-[2-(diethylamino)ethoxy]phenyl}amino)-8-methylpyrido[2,3-d]pyrimidin-7(8H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 N03 96M sing 1 n n C06 C07 96M sing 2 n n C04 N03 96M sing 3 n n C04 C05 96M sing 4 n n N03 C02 96M sing 5 n n C07 O08 96M sing 6 n n C02 C01 96M sing 7 n n O08 C09 96M sing 8 n n C25 N24 96M sing 9 n n C35 C09 96M doub 10 n y C35 C34 96M sing 11 n y O23 C22 96M doub 12 n n C09 C10 96M sing 13 n y C22 N24 96M sing 14 n n C22 C21 96M sing 15 n n N24 C16 96M sing 16 n n C34 C12 96M doub 17 n y C10 C11 96M doub 18 n y CL28 C27 96M sing 19 n n C29 C27 96M doub 20 n y C29 C30 96M sing 21 n y C27 C26 96M sing 22 n y C30 C31 96M doub 23 n y C26 C21 96M sing 24 n n C26 C32 96M doub 25 n y C31 C32 96M sing 26 n y C21 C20 96M doub 27 n n C16 N15 96M doub 28 n y C16 C17 96M sing 29 n y C32 CL33 96M sing 30 n n C12 C11 96M sing 31 n y C12 N13 96M sing 32 n n N15 C14 96M sing 33 n y C20 C17 96M sing 34 n n N13 C14 96M sing 35 n n C17 C18 96M doub 36 n y C14 N19 96M doub 37 n y N19 C18 96M sing 38 n y C01 H011 96M sing 39 n n C01 H013 96M sing 40 n n C01 H012 96M sing 41 n n C02 H021 96M sing 42 n n C02 H022 96M sing 43 n n C04 H042 96M sing 44 n n C04 H041 96M sing 45 n n C05 H051 96M sing 46 n n C05 H052 96M sing 47 n n C05 H053 96M sing 48 n n C06 H062 96M sing 49 n n C06 H061 96M sing 50 n n C07 H072 96M sing 51 n n C07 H071 96M sing 52 n n C10 H101 96M sing 53 n n C11 H111 96M sing 54 n n N13 H131 96M sing 55 n n C18 H181 96M sing 56 n n C20 H201 96M sing 57 n n C25 H252 96M sing 58 n n C25 H253 96M sing 59 n n C25 H251 96M sing 60 n n C29 H291 96M sing 61 n n C30 H301 96M sing 62 n n C31 H311 96M sing 63 n n C34 H341 96M sing 64 n n C35 H351 96M sing 65 n n # _atom_sites.entry_id 5VC5 _atom_sites.fract_transf_matrix[1][1] 0.01979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 96M A 1 601 1 96M UNK . C 3 EDO A 1 602 1 EDO EDO . D 4 CL A 1 603 1 CL CL . E 4 CL A 1 604 2 CL CL . F 5 PEG A 1 605 1 PEG PEG . G 6 HOH A 1 701 66 HOH HOH . G 6 HOH A 2 702 82 HOH HOH . G 6 HOH A 3 703 73 HOH HOH . G 6 HOH A 4 704 12 HOH HOH . G 6 HOH A 5 705 72 HOH HOH . G 6 HOH A 6 706 21 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 42 HOH HOH . G 6 HOH A 9 709 63 HOH HOH . G 6 HOH A 10 710 68 HOH HOH . G 6 HOH A 11 711 14 HOH HOH . G 6 HOH A 12 712 26 HOH HOH . G 6 HOH A 13 713 16 HOH HOH . G 6 HOH A 14 714 28 HOH HOH . G 6 HOH A 15 715 58 HOH HOH . G 6 HOH A 16 716 6 HOH HOH . G 6 HOH A 17 717 78 HOH HOH . G 6 HOH A 18 718 3 HOH HOH . G 6 HOH A 19 719 2 HOH HOH . G 6 HOH A 20 720 9 HOH HOH . G 6 HOH A 21 721 5 HOH HOH . G 6 HOH A 22 722 23 HOH HOH . G 6 HOH A 23 723 10 HOH HOH . G 6 HOH A 24 724 53 HOH HOH . G 6 HOH A 25 725 22 HOH HOH . G 6 HOH A 26 726 45 HOH HOH . G 6 HOH A 27 727 75 HOH HOH . G 6 HOH A 28 728 15 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 4 HOH HOH . G 6 HOH A 31 731 11 HOH HOH . G 6 HOH A 32 732 30 HOH HOH . G 6 HOH A 33 733 34 HOH HOH . G 6 HOH A 34 734 50 HOH HOH . G 6 HOH A 35 735 17 HOH HOH . G 6 HOH A 36 736 8 HOH HOH . G 6 HOH A 37 737 81 HOH HOH . G 6 HOH A 38 738 52 HOH HOH . G 6 HOH A 39 739 47 HOH HOH . G 6 HOH A 40 740 24 HOH HOH . G 6 HOH A 41 741 76 HOH HOH . G 6 HOH A 42 742 18 HOH HOH . G 6 HOH A 43 743 33 HOH HOH . G 6 HOH A 44 744 62 HOH HOH . G 6 HOH A 45 745 37 HOH HOH . G 6 HOH A 46 746 43 HOH HOH . G 6 HOH A 47 747 32 HOH HOH . G 6 HOH A 48 748 36 HOH HOH . G 6 HOH A 49 749 48 HOH HOH . G 6 HOH A 50 750 19 HOH HOH . G 6 HOH A 51 751 31 HOH HOH . G 6 HOH A 52 752 65 HOH HOH . G 6 HOH A 53 753 38 HOH HOH . G 6 HOH A 54 754 1 HOH HOH . G 6 HOH A 55 755 39 HOH HOH . G 6 HOH A 56 756 41 HOH HOH . G 6 HOH A 57 757 20 HOH HOH . G 6 HOH A 58 758 64 HOH HOH . G 6 HOH A 59 759 54 HOH HOH . G 6 HOH A 60 760 46 HOH HOH . G 6 HOH A 61 761 44 HOH HOH . G 6 HOH A 62 762 49 HOH HOH . G 6 HOH A 63 763 35 HOH HOH . G 6 HOH A 64 764 40 HOH HOH . G 6 HOH A 65 765 25 HOH HOH . G 6 HOH A 66 766 55 HOH HOH . G 6 HOH A 67 767 60 HOH HOH . G 6 HOH A 68 768 13 HOH HOH . G 6 HOH A 69 769 59 HOH HOH . G 6 HOH A 70 770 67 HOH HOH . G 6 HOH A 71 771 70 HOH HOH . G 6 HOH A 72 772 61 HOH HOH . G 6 HOH A 73 773 51 HOH HOH . G 6 HOH A 74 774 80 HOH HOH . G 6 HOH A 75 775 57 HOH HOH . G 6 HOH A 76 776 79 HOH HOH . G 6 HOH A 77 777 69 HOH HOH . G 6 HOH A 78 778 71 HOH HOH . G 6 HOH A 79 779 27 HOH HOH . G 6 HOH A 80 780 83 HOH HOH . G 6 HOH A 81 781 77 HOH HOH . G 6 HOH A 82 782 85 HOH HOH . G 6 HOH A 83 783 56 HOH HOH . G 6 HOH A 84 784 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 96M . . . B 2 -10.268 11.34 9.591 1 52.69 ? C01 96M 601 A 1 HETATM 2 C C02 96M . . . B 2 -10.092 11.736 8.088 1 53.85 ? C02 96M 601 A 1 HETATM 3 N N03 96M . . . B 2 -8.723 11.565 7.436 1 51.06 ? N03 96M 601 A 1 HETATM 4 C C04 96M . . . B 2 -7.764 12.719 7.312 1 47.8 ? C04 96M 601 A 1 HETATM 5 C C05 96M . . . B 2 -6.466 12.699 8.166 1 44.89 ? C05 96M 601 A 1 HETATM 6 C C06 96M . . . B 2 -8.208 10.211 7.002 1 46.85 ? C06 96M 601 A 1 HETATM 7 C C07 96M . . . B 2 -7.143 9.6 7.966 1 42.63 ? C07 96M 601 A 1 HETATM 8 O O08 96M . . . B 2 -7.414 10.056 9.32 1 36.09 ? O08 96M 601 A 1 HETATM 9 C C09 96M . . . B 2 -7.144 9.159 10.294 1 30.95 ? C09 96M 601 A 1 HETATM 10 C C10 96M . . . B 2 -7.946 9.077 11.453 1 28.95 ? C10 96M 601 A 1 HETATM 11 C C11 96M . . . B 2 -7.611 8.162 12.475 1 26.89 ? C11 96M 601 A 1 HETATM 12 C C12 96M . . . B 2 -6.484 7.31 12.339 1 24.69 ? C12 96M 601 A 1 HETATM 13 N N13 96M . . . B 2 -6.219 6.462 13.392 1 20.14 ? N13 96M 601 A 1 HETATM 14 C C14 96M . . . B 2 -5.573 5.286 13.426 1 17.92 ? C14 96M 601 A 1 HETATM 15 N N15 96M . . . B 2 -4.839 4.889 12.367 1 19.07 ? N15 96M 601 A 1 HETATM 16 C C16 96M . . . B 2 -4.174 3.728 12.3 1 18.16 ? C16 96M 601 A 1 HETATM 17 C C17 96M . . . B 2 -4.222 2.884 13.412 1 16.8 ? C17 96M 601 A 1 HETATM 18 C C18 96M . . . B 2 -4.945 3.308 14.529 1 18.08 ? C18 96M 601 A 1 HETATM 19 N N19 96M . . . B 2 -5.597 4.489 14.508 1 16.91 ? N19 96M 601 A 1 HETATM 20 C C20 96M . . . B 2 -3.521 1.662 13.391 1 17.65 ? C20 96M 601 A 1 HETATM 21 C C21 96M . . . B 2 -2.796 1.286 12.249 1 18.53 ? C21 96M 601 A 1 HETATM 22 C C22 96M . . . B 2 -2.779 2.183 11.153 1 19.48 ? C22 96M 601 A 1 HETATM 23 O O23 96M . . . B 2 -2.089 1.81 10.181 1 21.52 ? O23 96M 601 A 1 HETATM 24 N N24 96M . . . B 2 -3.468 3.381 11.175 1 19.49 ? N24 96M 601 A 1 HETATM 25 C C25 96M . . . B 2 -3.489 4.305 10.052 1 20.07 ? C25 96M 601 A 1 HETATM 26 C C26 96M . . . B 2 -2.092 0.04 12.197 1 21.63 ? C26 96M 601 A 1 HETATM 27 C C27 96M . . . B 2 -2.798 -1.174 11.97 1 22.75 ? C27 96M 601 A 1 HETATM 28 CL CL28 96M . . . B 2 -4.479 -1.165 11.812 1 22.59 ? CL28 96M 601 A 1 HETATM 29 C C29 96M . . . B 2 -2.132 -2.426 11.909 1 24.08 ? C29 96M 601 A 1 HETATM 30 C C30 96M . . . B 2 -0.725 -2.474 12.029 1 25.63 ? C30 96M 601 A 1 HETATM 31 C C31 96M . . . B 2 -0.01 -1.285 12.229 1 25.41 ? C31 96M 601 A 1 HETATM 32 C C32 96M . . . B 2 -0.685 -0.041 12.313 1 23.77 ? C32 96M 601 A 1 HETATM 33 CL CL33 96M . . . B 2 0.235 1.357 12.563 1 25.94 ? CL33 96M 601 A 1 HETATM 34 C C34 96M . . . B 2 -5.698 7.419 11.181 1 26.81 ? C34 96M 601 A 1 HETATM 35 C C35 96M . . . B 2 -6.011 8.335 10.171 1 28.8 ? C35 96M 601 A 1 HETATM 36 H H011 96M . . . B 2 -11.201 11.075 9.753 1 63.23 ? H011 96M 601 A 1 HETATM 37 H H013 96M . . . B 2 -10.042 12.107 10.162 1 63.23 ? H013 96M 601 A 1 HETATM 38 H H012 96M . . . B 2 -9.673 10.587 9.803 1 63.23 ? H012 96M 601 A 1 HETATM 39 H H021 96M . . . B 2 -10.735 11.208 7.566 1 64.62 ? H021 96M 601 A 1 HETATM 40 H H022 96M . . . B 2 -10.343 12.682 8.001 1 64.62 ? H022 96M 601 A 1 HETATM 41 H H042 96M . . . B 2 -8.256 13.538 7.54 1 57.36 ? H042 96M 601 A 1 HETATM 42 H H041 96M . . . B 2 -7.497 12.782 6.368 1 57.36 ? H041 96M 601 A 1 HETATM 43 H H051 96M . . . B 2 -6.668 12.344 9.06 1 53.87 ? H051 96M 601 A 1 HETATM 44 H H052 96M . . . B 2 -6.114 13.614 8.248 1 53.87 ? H052 96M 601 A 1 HETATM 45 H H053 96M . . . B 2 -5.796 12.127 7.73 1 53.87 ? H053 96M 601 A 1 HETATM 46 H H062 96M . . . B 2 -7.806 10.302 6.11 1 56.22 ? H062 96M 601 A 1 HETATM 47 H H061 96M . . . B 2 -8.968 9.592 6.942 1 56.22 ? H061 96M 601 A 1 HETATM 48 H H072 96M . . . B 2 -6.244 9.89 7.693 1 51.16 ? H072 96M 601 A 1 HETATM 49 H H071 96M . . . B 2 -7.198 8.621 7.933 1 51.16 ? H071 96M 601 A 1 HETATM 50 H H101 96M . . . B 2 -8.728 9.663 11.554 1 34.74 ? H101 96M 601 A 1 HETATM 51 H H111 96M . . . B 2 -8.173 8.102 13.278 1 32.27 ? H111 96M 601 A 1 HETATM 52 H H131 96M . . . B 2 -6.536 6.748 14.204 1 24.16 ? H131 96M 601 A 1 HETATM 53 H H181 96M . . . B 2 -5.003 2.731 15.322 1 21.69 ? H181 96M 601 A 1 HETATM 54 H H201 96M . . . B 2 -3.546 1.068 14.173 1 21.18 ? H201 96M 601 A 1 HETATM 55 H H252 96M . . . B 2 -2.975 3.926 9.306 1 24.08 ? H252 96M 601 A 1 HETATM 56 H H253 96M . . . B 2 -3.088 5.161 10.325 1 24.08 ? H253 96M 601 A 1 HETATM 57 H H251 96M . . . B 2 -4.418 4.454 9.768 1 24.08 ? H251 96M 601 A 1 HETATM 58 H H291 96M . . . B 2 -2.643 -3.25 11.756 1 28.89 ? H291 96M 601 A 1 HETATM 59 H H301 96M . . . B 2 -0.253 -3.333 11.98 1 30.75 ? H301 96M 601 A 1 HETATM 60 H H311 96M . . . B 2 0.966 -1.316 12.328 1 30.49 ? H311 96M 601 A 1 HETATM 61 H H341 96M . . . B 2 -4.906 6.848 11.081 1 32.17 ? H341 96M 601 A 1 HETATM 62 H H351 96M . . . B 2 -5.449 8.391 9.368 1 34.56 ? H351 96M 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 62 #