data_5VC5 # _model_server_result.job_id Yi0wsY9fL7iBgpwO4_x7xg _model_server_result.datetime_utc '2024-11-13 06:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5VC5 # _exptl.entry_id 5VC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.97 _cell.angle_gamma 90 _cell.entry_id 5VC5 _cell.length_a 50.53 _cell.length_b 44.4 _cell.length_c 61.98 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 148 n n C1 C2 EDO sing 149 n n C1 H11 EDO sing 150 n n C1 H12 EDO sing 151 n n O1 HO1 EDO sing 152 n n C2 O2 EDO sing 153 n n C2 H21 EDO sing 154 n n C2 H22 EDO sing 155 n n O2 HO2 EDO sing 156 n n # _atom_sites.entry_id 5VC5 _atom_sites.fract_transf_matrix[1][1] 0.01979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 96M A 1 601 1 96M UNK . C 3 EDO A 1 602 1 EDO EDO . D 4 CL A 1 603 1 CL CL . E 4 CL A 1 604 2 CL CL . F 5 PEG A 1 605 1 PEG PEG . G 6 HOH A 1 701 66 HOH HOH . G 6 HOH A 2 702 82 HOH HOH . G 6 HOH A 3 703 73 HOH HOH . G 6 HOH A 4 704 12 HOH HOH . G 6 HOH A 5 705 72 HOH HOH . G 6 HOH A 6 706 21 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 42 HOH HOH . G 6 HOH A 9 709 63 HOH HOH . G 6 HOH A 10 710 68 HOH HOH . G 6 HOH A 11 711 14 HOH HOH . G 6 HOH A 12 712 26 HOH HOH . G 6 HOH A 13 713 16 HOH HOH . G 6 HOH A 14 714 28 HOH HOH . G 6 HOH A 15 715 58 HOH HOH . G 6 HOH A 16 716 6 HOH HOH . G 6 HOH A 17 717 78 HOH HOH . G 6 HOH A 18 718 3 HOH HOH . G 6 HOH A 19 719 2 HOH HOH . G 6 HOH A 20 720 9 HOH HOH . G 6 HOH A 21 721 5 HOH HOH . G 6 HOH A 22 722 23 HOH HOH . G 6 HOH A 23 723 10 HOH HOH . G 6 HOH A 24 724 53 HOH HOH . G 6 HOH A 25 725 22 HOH HOH . G 6 HOH A 26 726 45 HOH HOH . G 6 HOH A 27 727 75 HOH HOH . G 6 HOH A 28 728 15 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 4 HOH HOH . G 6 HOH A 31 731 11 HOH HOH . G 6 HOH A 32 732 30 HOH HOH . G 6 HOH A 33 733 34 HOH HOH . G 6 HOH A 34 734 50 HOH HOH . G 6 HOH A 35 735 17 HOH HOH . G 6 HOH A 36 736 8 HOH HOH . G 6 HOH A 37 737 81 HOH HOH . G 6 HOH A 38 738 52 HOH HOH . G 6 HOH A 39 739 47 HOH HOH . G 6 HOH A 40 740 24 HOH HOH . G 6 HOH A 41 741 76 HOH HOH . G 6 HOH A 42 742 18 HOH HOH . G 6 HOH A 43 743 33 HOH HOH . G 6 HOH A 44 744 62 HOH HOH . G 6 HOH A 45 745 37 HOH HOH . G 6 HOH A 46 746 43 HOH HOH . G 6 HOH A 47 747 32 HOH HOH . G 6 HOH A 48 748 36 HOH HOH . G 6 HOH A 49 749 48 HOH HOH . G 6 HOH A 50 750 19 HOH HOH . G 6 HOH A 51 751 31 HOH HOH . G 6 HOH A 52 752 65 HOH HOH . G 6 HOH A 53 753 38 HOH HOH . G 6 HOH A 54 754 1 HOH HOH . G 6 HOH A 55 755 39 HOH HOH . G 6 HOH A 56 756 41 HOH HOH . G 6 HOH A 57 757 20 HOH HOH . G 6 HOH A 58 758 64 HOH HOH . G 6 HOH A 59 759 54 HOH HOH . G 6 HOH A 60 760 46 HOH HOH . G 6 HOH A 61 761 44 HOH HOH . G 6 HOH A 62 762 49 HOH HOH . G 6 HOH A 63 763 35 HOH HOH . G 6 HOH A 64 764 40 HOH HOH . G 6 HOH A 65 765 25 HOH HOH . G 6 HOH A 66 766 55 HOH HOH . G 6 HOH A 67 767 60 HOH HOH . G 6 HOH A 68 768 13 HOH HOH . G 6 HOH A 69 769 59 HOH HOH . G 6 HOH A 70 770 67 HOH HOH . G 6 HOH A 71 771 70 HOH HOH . G 6 HOH A 72 772 61 HOH HOH . G 6 HOH A 73 773 51 HOH HOH . G 6 HOH A 74 774 80 HOH HOH . G 6 HOH A 75 775 57 HOH HOH . G 6 HOH A 76 776 79 HOH HOH . G 6 HOH A 77 777 69 HOH HOH . G 6 HOH A 78 778 71 HOH HOH . G 6 HOH A 79 779 27 HOH HOH . G 6 HOH A 80 780 83 HOH HOH . G 6 HOH A 81 781 77 HOH HOH . G 6 HOH A 82 782 85 HOH HOH . G 6 HOH A 83 783 56 HOH HOH . G 6 HOH A 84 784 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 1.274 -4.756 21.808 1 47.29 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . C 3 1.133 -5.097 20.403 1 53.17 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . C 3 0.14 -3.818 22.174 1 42.98 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . C 3 -1.116 -4.508 22.051 1 40.47 ? O2 EDO 602 A 1 HETATM 5 H H11 EDO . . . C 3 1.227 -5.659 22.42 1 56.75 ? H11 EDO 602 A 1 HETATM 6 H H12 EDO . . . C 3 2.236 -4.269 21.981 1 56.75 ? H12 EDO 602 A 1 HETATM 7 H HO1 EDO . . . C 3 1.846 -5.697 20.144 1 63.8 ? HO1 EDO 602 A 1 HETATM 8 H H21 EDO . . . C 3 0.269 -3.467 23.2 1 51.58 ? H21 EDO 602 A 1 HETATM 9 H H22 EDO . . . C 3 0.152 -2.95 21.512 1 51.58 ? H22 EDO 602 A 1 HETATM 10 H HO2 EDO . . . C 3 -1.837 -3.907 22.285 1 48.57 ? HO2 EDO 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #