data_5VC5 # _model_server_result.job_id 7JrDMc4HTbCT-uuB70oGAg _model_server_result.datetime_utc '2024-11-13 06:11:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 5VC5 # _exptl.entry_id 5VC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.97 _cell.angle_gamma 90 _cell.entry_id 5VC5 _cell.length_a 50.53 _cell.length_b 44.4 _cell.length_c 61.98 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 311 n n C1 C2 PEG sing 312 n n C1 H11 PEG sing 313 n n C1 H12 PEG sing 314 n n O1 HO1 PEG sing 315 n n C2 O2 PEG sing 316 n n C2 H21 PEG sing 317 n n C2 H22 PEG sing 318 n n O2 C3 PEG sing 319 n n C3 C4 PEG sing 320 n n C3 H31 PEG sing 321 n n C3 H32 PEG sing 322 n n C4 O4 PEG sing 323 n n C4 H41 PEG sing 324 n n C4 H42 PEG sing 325 n n O4 HO4 PEG sing 326 n n # _atom_sites.entry_id 5VC5 _atom_sites.fract_transf_matrix[1][1] 0.01979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 96M A 1 601 1 96M UNK . C 3 EDO A 1 602 1 EDO EDO . D 4 CL A 1 603 1 CL CL . E 4 CL A 1 604 2 CL CL . F 5 PEG A 1 605 1 PEG PEG . G 6 HOH A 1 701 66 HOH HOH . G 6 HOH A 2 702 82 HOH HOH . G 6 HOH A 3 703 73 HOH HOH . G 6 HOH A 4 704 12 HOH HOH . G 6 HOH A 5 705 72 HOH HOH . G 6 HOH A 6 706 21 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 42 HOH HOH . G 6 HOH A 9 709 63 HOH HOH . G 6 HOH A 10 710 68 HOH HOH . G 6 HOH A 11 711 14 HOH HOH . G 6 HOH A 12 712 26 HOH HOH . G 6 HOH A 13 713 16 HOH HOH . G 6 HOH A 14 714 28 HOH HOH . G 6 HOH A 15 715 58 HOH HOH . G 6 HOH A 16 716 6 HOH HOH . G 6 HOH A 17 717 78 HOH HOH . G 6 HOH A 18 718 3 HOH HOH . G 6 HOH A 19 719 2 HOH HOH . G 6 HOH A 20 720 9 HOH HOH . G 6 HOH A 21 721 5 HOH HOH . G 6 HOH A 22 722 23 HOH HOH . G 6 HOH A 23 723 10 HOH HOH . G 6 HOH A 24 724 53 HOH HOH . G 6 HOH A 25 725 22 HOH HOH . G 6 HOH A 26 726 45 HOH HOH . G 6 HOH A 27 727 75 HOH HOH . G 6 HOH A 28 728 15 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 4 HOH HOH . G 6 HOH A 31 731 11 HOH HOH . G 6 HOH A 32 732 30 HOH HOH . G 6 HOH A 33 733 34 HOH HOH . G 6 HOH A 34 734 50 HOH HOH . G 6 HOH A 35 735 17 HOH HOH . G 6 HOH A 36 736 8 HOH HOH . G 6 HOH A 37 737 81 HOH HOH . G 6 HOH A 38 738 52 HOH HOH . G 6 HOH A 39 739 47 HOH HOH . G 6 HOH A 40 740 24 HOH HOH . G 6 HOH A 41 741 76 HOH HOH . G 6 HOH A 42 742 18 HOH HOH . G 6 HOH A 43 743 33 HOH HOH . G 6 HOH A 44 744 62 HOH HOH . G 6 HOH A 45 745 37 HOH HOH . G 6 HOH A 46 746 43 HOH HOH . G 6 HOH A 47 747 32 HOH HOH . G 6 HOH A 48 748 36 HOH HOH . G 6 HOH A 49 749 48 HOH HOH . G 6 HOH A 50 750 19 HOH HOH . G 6 HOH A 51 751 31 HOH HOH . G 6 HOH A 52 752 65 HOH HOH . G 6 HOH A 53 753 38 HOH HOH . G 6 HOH A 54 754 1 HOH HOH . G 6 HOH A 55 755 39 HOH HOH . G 6 HOH A 56 756 41 HOH HOH . G 6 HOH A 57 757 20 HOH HOH . G 6 HOH A 58 758 64 HOH HOH . G 6 HOH A 59 759 54 HOH HOH . G 6 HOH A 60 760 46 HOH HOH . G 6 HOH A 61 761 44 HOH HOH . G 6 HOH A 62 762 49 HOH HOH . G 6 HOH A 63 763 35 HOH HOH . G 6 HOH A 64 764 40 HOH HOH . G 6 HOH A 65 765 25 HOH HOH . G 6 HOH A 66 766 55 HOH HOH . G 6 HOH A 67 767 60 HOH HOH . G 6 HOH A 68 768 13 HOH HOH . G 6 HOH A 69 769 59 HOH HOH . G 6 HOH A 70 770 67 HOH HOH . G 6 HOH A 71 771 70 HOH HOH . G 6 HOH A 72 772 61 HOH HOH . G 6 HOH A 73 773 51 HOH HOH . G 6 HOH A 74 774 80 HOH HOH . G 6 HOH A 75 775 57 HOH HOH . G 6 HOH A 76 776 79 HOH HOH . G 6 HOH A 77 777 69 HOH HOH . G 6 HOH A 78 778 71 HOH HOH . G 6 HOH A 79 779 27 HOH HOH . G 6 HOH A 80 780 83 HOH HOH . G 6 HOH A 81 781 77 HOH HOH . G 6 HOH A 82 782 85 HOH HOH . G 6 HOH A 83 783 56 HOH HOH . G 6 HOH A 84 784 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 5 -11.445 -7.071 22.621 1 61.77 ? C1 PEG 605 A 1 HETATM 2 O O1 PEG . . . F 5 -11.305 -6.191 23.647 1 63.06 ? O1 PEG 605 A 1 HETATM 3 C C2 PEG . . . F 5 -11.838 -6.269 21.424 1 59.82 ? C2 PEG 605 A 1 HETATM 4 O O2 PEG . . . F 5 -12.175 -7.012 20.246 1 59.91 ? O2 PEG 605 A 1 HETATM 5 C C3 PEG . . . F 5 -11.227 -7.842 19.529 1 52.07 ? C3 PEG 605 A 1 HETATM 6 C C4 PEG . . . F 5 -10.924 -9.129 20.268 1 52.74 ? C4 PEG 605 A 1 HETATM 7 O O4 PEG . . . F 5 -10.59 -10.072 19.296 1 51.47 ? O4 PEG 605 A 1 HETATM 8 H H11 PEG . . . F 5 -12.154 -7.726 22.836 1 74.12 ? H11 PEG 605 A 1 HETATM 9 H H12 PEG . . . F 5 -10.567 -7.55 22.447 1 74.12 ? H12 PEG 605 A 1 HETATM 10 H HO1 PEG . . . F 5 -11.819 -5.52 23.515 1 75.67 ? HO1 PEG 605 A 1 HETATM 11 H H21 PEG . . . F 5 -12.626 -5.679 21.667 1 71.79 ? H21 PEG 605 A 1 HETATM 12 H H22 PEG . . . F 5 -11.049 -5.668 21.194 1 71.79 ? H22 PEG 605 A 1 HETATM 13 H H31 PEG . . . F 5 -11.617 -8.071 18.649 1 62.49 ? H31 PEG 605 A 1 HETATM 14 H H32 PEG . . . F 5 -10.365 -7.326 19.385 1 62.49 ? H32 PEG 605 A 1 HETATM 15 H H41 PEG . . . F 5 -11.733 -9.433 20.768 1 63.28 ? H41 PEG 605 A 1 HETATM 16 H H42 PEG . . . F 5 -10.165 -8.994 20.894 1 63.28 ? H42 PEG 605 A 1 HETATM 17 H HO4 PEG . . . F 5 -9.785 -9.859 18.931 1 61.76 ? HO4 PEG 605 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #