data_5VC6
#
_model_server_result.job_id            We_j_AfgngWCOzWYUkAgkQ 
_model_server_result.datetime_utc      '2024-11-16 16:19:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5VC6 
#
_exptl.entry_id    5VC6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.91 
_cell.angle_gamma         90 
_cell.entry_id            5VC6 
_cell.length_a            50.43 
_cell.length_b            44.92 
_cell.length_c            64.8 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VC6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5VC6 
_atom_sites.fract_transf_matrix[1][1]    0.019829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004544 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 P48 A 1 601 1 P48 P48 . 
C 3 EDO A 1 602 1 EDO EDO . 
D 4 HOH A 1 701 65 HOH HOH . 
D 4 HOH A 2 702 61 HOH HOH . 
D 4 HOH A 3 703 45 HOH HOH . 
D 4 HOH A 4 704 3 HOH HOH . 
D 4 HOH A 5 705 13 HOH HOH . 
D 4 HOH A 6 706 29 HOH HOH . 
D 4 HOH A 7 707 41 HOH HOH . 
D 4 HOH A 8 708 51 HOH HOH . 
D 4 HOH A 9 709 19 HOH HOH . 
D 4 HOH A 10 710 78 HOH HOH . 
D 4 HOH A 11 711 92 HOH HOH . 
D 4 HOH A 12 712 43 HOH HOH . 
D 4 HOH A 13 713 26 HOH HOH . 
D 4 HOH A 14 714 52 HOH HOH . 
D 4 HOH A 15 715 75 HOH HOH . 
D 4 HOH A 16 716 83 HOH HOH . 
D 4 HOH A 17 717 17 HOH HOH . 
D 4 HOH A 18 718 15 HOH HOH . 
D 4 HOH A 19 719 23 HOH HOH . 
D 4 HOH A 20 720 53 HOH HOH . 
D 4 HOH A 21 721 80 HOH HOH . 
D 4 HOH A 22 722 16 HOH HOH . 
D 4 HOH A 23 723 4 HOH HOH . 
D 4 HOH A 24 724 10 HOH HOH . 
D 4 HOH A 25 725 42 HOH HOH . 
D 4 HOH A 26 726 18 HOH HOH . 
D 4 HOH A 27 727 9 HOH HOH . 
D 4 HOH A 28 728 21 HOH HOH . 
D 4 HOH A 29 729 56 HOH HOH . 
D 4 HOH A 30 730 93 HOH HOH . 
D 4 HOH A 31 731 24 HOH HOH . 
D 4 HOH A 32 732 1 HOH HOH . 
D 4 HOH A 33 733 64 HOH HOH . 
D 4 HOH A 34 734 25 HOH HOH . 
D 4 HOH A 35 735 76 HOH HOH . 
D 4 HOH A 36 736 70 HOH HOH . 
D 4 HOH A 37 737 69 HOH HOH . 
D 4 HOH A 38 738 12 HOH HOH . 
D 4 HOH A 39 739 32 HOH HOH . 
D 4 HOH A 40 740 5 HOH HOH . 
D 4 HOH A 41 741 20 HOH HOH . 
D 4 HOH A 42 742 35 HOH HOH . 
D 4 HOH A 43 743 7 HOH HOH . 
D 4 HOH A 44 744 27 HOH HOH . 
D 4 HOH A 45 745 6 HOH HOH . 
D 4 HOH A 46 746 90 HOH HOH . 
D 4 HOH A 47 747 46 HOH HOH . 
D 4 HOH A 48 748 82 HOH HOH . 
D 4 HOH A 49 749 58 HOH HOH . 
D 4 HOH A 50 750 31 HOH HOH . 
D 4 HOH A 51 751 60 HOH HOH . 
D 4 HOH A 52 752 14 HOH HOH . 
D 4 HOH A 53 753 91 HOH HOH . 
D 4 HOH A 54 754 48 HOH HOH . 
D 4 HOH A 55 755 11 HOH HOH . 
D 4 HOH A 56 756 33 HOH HOH . 
D 4 HOH A 57 757 87 HOH HOH . 
D 4 HOH A 58 758 85 HOH HOH . 
D 4 HOH A 59 759 44 HOH HOH . 
D 4 HOH A 60 760 47 HOH HOH . 
D 4 HOH A 61 761 79 HOH HOH . 
D 4 HOH A 62 762 59 HOH HOH . 
D 4 HOH A 63 763 94 HOH HOH . 
D 4 HOH A 64 764 71 HOH HOH . 
D 4 HOH A 65 765 57 HOH HOH . 
D 4 HOH A 66 766 2 HOH HOH . 
D 4 HOH A 67 767 40 HOH HOH . 
D 4 HOH A 68 768 8 HOH HOH . 
D 4 HOH A 69 769 28 HOH HOH . 
D 4 HOH A 70 770 22 HOH HOH . 
D 4 HOH A 71 771 34 HOH HOH . 
D 4 HOH A 72 772 81 HOH HOH . 
D 4 HOH A 73 773 72 HOH HOH . 
D 4 HOH A 74 774 54 HOH HOH . 
D 4 HOH A 75 775 36 HOH HOH . 
D 4 HOH A 76 776 68 HOH HOH . 
D 4 HOH A 77 777 38 HOH HOH . 
D 4 HOH A 78 778 30 HOH HOH . 
D 4 HOH A 79 779 95 HOH HOH . 
D 4 HOH A 80 780 39 HOH HOH . 
D 4 HOH A 81 781 73 HOH HOH . 
D 4 HOH A 82 782 63 HOH HOH . 
D 4 HOH A 83 783 77 HOH HOH . 
D 4 HOH A 84 784 66 HOH HOH . 
D 4 HOH A 85 785 50 HOH HOH . 
D 4 HOH A 86 786 86 HOH HOH . 
D 4 HOH A 87 787 55 HOH HOH . 
D 4 HOH A 88 788 49 HOH HOH . 
D 4 HOH A 89 789 74 HOH HOH . 
D 4 HOH A 90 790 62 HOH HOH . 
D 4 HOH A 91 791 89 HOH HOH . 
D 4 HOH A 92 792 67 HOH HOH . 
D 4 HOH A 93 793 84 HOH HOH . 
D 4 HOH A 94 794 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 34.154 2.277 2.608 1 20.54 ? C1 EDO 602 A 1 
HETATM 2 O O1 EDO . . . C 3 35.54 1.957 2.824 1 21.68 ? O1 EDO 602 A 1 
HETATM 3 C C2 EDO . . . C 3 33.289 1.216 3.258 1 20.04 ? C2 EDO 602 A 1 
HETATM 4 O O2 EDO . . . C 3 31.92 1.659 3.212 1 21.17 ? O2 EDO 602 A 1 
HETATM 5 H H11 EDO . . . C 3 33.927 3.255 3.039 1 24.65 ? H11 EDO 602 A 1 
HETATM 6 H H12 EDO . . . C 3 33.946 2.319 1.537 1 24.65 ? H12 EDO 602 A 1 
HETATM 7 H HO1 EDO . . . C 3 36.095 2.632 2.41 1 26.01 ? HO1 EDO 602 A 1 
HETATM 8 H H21 EDO . . . C 3 33.394 0.269 2.725 1 24.04 ? H21 EDO 602 A 1 
HETATM 9 H H22 EDO . . . C 3 33.598 1.065 4.295 1 24.04 ? H22 EDO 602 A 1 
HETATM 10 H HO2 EDO . . . C 3 31.352 0.994 3.623 1 25.4 ? HO2 EDO 602 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#