data_5VCE
#
_model_server_result.job_id            dufzmtfg8WefgO-uXRD3tA 
_model_server_result.datetime_utc      '2024-11-28 01:21:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vce 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5VCE 
#
_exptl.entry_id    5VCE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              720.944 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RITONAVIR 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VCE 
_cell.length_a            77.37 
_cell.length_b            100.71 
_cell.length_c            129.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VCE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1,2 
A,B,C,D 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 77.37 100.71 0 
3 'crystal symmetry operation' 3_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 77.37 0 258.44 
4 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 100.71 258.44 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N5 RIT . A RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'C37 H48 N6 O5 S2' 
_chem_comp.formula_weight    720.944 
_chem_comp.id                RIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RITONAVIR 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     A-84538 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RIT doub 359 n y 
C1 N5 RIT sing 360 n y 
C1 H1 RIT sing 361 n n 
C2 S3 RIT sing 362 n y 
C2 C6 RIT sing 363 n n 
S3 C4 RIT sing 364 n y 
C4 N5 RIT doub 365 n y 
C4 H4 RIT sing 366 n n 
C6 O7 RIT sing 367 n n 
C6 H61 RIT sing 368 n n 
C6 H62A RIT sing 369 n n 
O7 C10 RIT sing 370 n n 
C10 N11 RIT sing 371 n n 
C10 O24 RIT doub 372 n n 
N11 C12 RIT sing 373 n n 
N11 H11 RIT sing 374 n n 
C12 C13 RIT sing 375 n n 
C12 C26 RIT sing 376 n n 
C12 H12 RIT sing 377 n n 
C13 C14 RIT sing 378 n n 
C13 O41 RIT sing 379 n n 
C13 H13 RIT sing 380 n n 
C14 C15 RIT sing 381 n n 
C14 H141 RIT sing 382 n n 
C14 H142 RIT sing 383 n n 
C15 C44 RIT sing 384 n n 
C15 N58 RIT sing 385 n n 
C15 H15 RIT sing 386 n n 
C18 C19 RIT sing 387 n n 
C18 N58 RIT sing 388 n n 
C18 O61 RIT doub 389 n n 
C19 N20 RIT sing 390 n n 
C19 C62 RIT sing 391 n n 
C19 H19 RIT sing 392 n n 
N20 C21 RIT sing 393 n n 
N20 H20 RIT sing 394 n n 
C21 N74 RIT sing 395 n n 
C21 O76 RIT doub 396 n n 
C26 C28 RIT sing 397 n n 
C26 H261 RIT sing 398 n n 
C26 H262 RIT sing 399 n n 
C28 C31 RIT doub 400 n y 
C28 C35 RIT sing 401 n y 
C31 C32 RIT sing 402 n y 
C31 H31 RIT sing 403 n n 
C32 C33 RIT doub 404 n y 
C32 H32 RIT sing 405 n n 
C33 C34 RIT sing 406 n y 
C33 H33 RIT sing 407 n n 
C34 C35 RIT doub 408 n y 
C34 H34 RIT sing 409 n n 
C35 H35 RIT sing 410 n n 
O41 HO4 RIT sing 411 n n 
C44 C45 RIT sing 412 n n 
C44 H441 RIT sing 413 n n 
C44 H442 RIT sing 414 n n 
C45 C48 RIT doub 415 n y 
C45 C52 RIT sing 416 n y 
C48 C49 RIT sing 417 n y 
C48 H48 RIT sing 418 n n 
C49 C50 RIT doub 419 n y 
C49 H49 RIT sing 420 n n 
C50 C51 RIT sing 421 n y 
C50 H50 RIT sing 422 n n 
C51 C52 RIT doub 423 n y 
C51 H51 RIT sing 424 n n 
C52 H52 RIT sing 425 n n 
N58 H58 RIT sing 426 n n 
C62 C64 RIT sing 427 n n 
C62 C68 RIT sing 428 n n 
C62 H62 RIT sing 429 n n 
C64 H641 RIT sing 430 n n 
C64 H642 RIT sing 431 n n 
C64 H643 RIT sing 432 n n 
C68 H681 RIT sing 433 n n 
C68 H682 RIT sing 434 n n 
C68 H683 RIT sing 435 n n 
N74 C75 RIT sing 436 n n 
N74 C95 RIT sing 437 n n 
C75 C77 RIT sing 438 n n 
C75 H751 RIT sing 439 n n 
C75 H752 RIT sing 440 n n 
C77 C80 RIT doub 441 n y 
C77 N83 RIT sing 442 n y 
C80 S81 RIT sing 443 n y 
C80 H80 RIT sing 444 n n 
S81 C82 RIT sing 445 n y 
C82 N83 RIT doub 446 n y 
C82 C85 RIT sing 447 n n 
C85 C86 RIT sing 448 n n 
C85 C90 RIT sing 449 n n 
C85 H85 RIT sing 450 n n 
C86 H861 RIT sing 451 n n 
C86 H862 RIT sing 452 n n 
C86 H863 RIT sing 453 n n 
C90 H901 RIT sing 454 n n 
C90 H902 RIT sing 455 n n 
C90 H903 RIT sing 456 n n 
C95 H951 RIT sing 457 n n 
C95 H952 RIT sing 458 n n 
C95 H953 RIT sing 459 n n 
#
_atom_sites.entry_id                     5VCE 
_atom_sites.fract_transf_matrix[1][1]    0.012925 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00993 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 RIT A 1 602 602 RIT RIT . 
D 4 HOH A 1 701 10 HOH HOH . 
D 4 HOH A 2 702 14 HOH HOH . 
D 4 HOH A 3 703 9 HOH HOH . 
D 4 HOH A 4 704 2 HOH HOH . 
D 4 HOH A 5 705 16 HOH HOH . 
D 4 HOH A 6 706 1 HOH HOH . 
D 4 HOH A 7 707 4 HOH HOH . 
D 4 HOH A 8 708 5 HOH HOH . 
D 4 HOH A 9 709 6 HOH HOH . 
D 4 HOH A 10 710 11 HOH HOH . 
D 4 HOH A 11 711 8 HOH HOH . 
D 4 HOH A 12 712 7 HOH HOH . 
D 4 HOH A 13 713 17 HOH HOH . 
D 4 HOH A 14 714 3 HOH HOH . 
D 4 HOH A 15 715 15 HOH HOH . 
D 4 HOH A 16 716 13 HOH HOH . 
D 4 HOH A 17 717 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIT . . . C 3 17.883 27.422 137.843 1 68.57 ? C1 RIT 602 A 1 
HETATM 2 C C2 RIT . . . C 3 19.201 27.601 137.716 1 72.09 ? C2 RIT 602 A 1 
HETATM 3 S S3 RIT . . . C 3 19.77 27.607 139.315 1 66.44 ? S3 RIT 602 A 1 
HETATM 4 C C4 RIT . . . C 3 18.261 27.358 140.022 1 62.11 ? C4 RIT 602 A 1 
HETATM 5 N N5 RIT . . . C 3 17.414 27.288 138.997 1 62.52 ? N5 RIT 602 A 1 
HETATM 6 C C6 RIT . . . C 3 19.994 27.785 136.421 1 80.25 ? C6 RIT 602 A 1 
HETATM 7 O O7 RIT . . . C 3 20.824 28.934 136.64 1 95.12 ? O7 RIT 602 A 1 
HETATM 8 C C10 RIT . . . C 3 20.213 30.212 136.435 1 93.4 ? C10 RIT 602 A 1 
HETATM 9 O O24 RIT . . . C 3 19.145 30.502 136.935 1 98 ? O24 RIT 602 A 1 
HETATM 10 N N11 RIT . . . C 3 20.957 31.216 135.676 1 95.44 ? N11 RIT 602 A 1 
HETATM 11 C C12 RIT . . . C 3 21.848 32.176 136.35 1 94.9 ? C12 RIT 602 A 1 
HETATM 12 C C13 RIT . . . C 3 21.279 33.596 136.177 1 92.06 ? C13 RIT 602 A 1 
HETATM 13 C C14 RIT . . . C 3 20.058 33.838 137.083 1 98.65 ? C14 RIT 602 A 1 
HETATM 14 C C15 RIT . . . C 3 20.112 33.399 138.551 1 97.26 ? C15 RIT 602 A 1 
HETATM 15 C C26 RIT . . . C 3 23.276 32.153 135.76 1 89.74 ? C26 RIT 602 A 1 
HETATM 16 C C28 RIT . . . C 3 23.854 30.767 135.431 1 83.48 ? C28 RIT 602 A 1 
HETATM 17 C C31 RIT . . . C 3 24.763 30.167 136.307 1 79.46 ? C31 RIT 602 A 1 
HETATM 18 C C32 RIT . . . C 3 25.292 28.912 135.99 1 85.78 ? C32 RIT 602 A 1 
HETATM 19 C C33 RIT . . . C 3 24.913 28.263 134.805 1 85.66 ? C33 RIT 602 A 1 
HETATM 20 C C34 RIT . . . C 3 24.003 28.862 133.929 1 89.79 ? C34 RIT 602 A 1 
HETATM 21 C C35 RIT . . . C 3 23.486 30.125 134.239 1 87.81 ? C35 RIT 602 A 1 
HETATM 22 O O41 RIT . . . C 3 20.945 33.735 135.026 1 90.82 ? O41 RIT 602 A 1 
HETATM 23 C C44 RIT . . . C 3 18.707 33.013 139.042 1 94.42 ? C44 RIT 602 A 1 
HETATM 24 C C45 RIT . . . C 3 18.928 32.255 140.356 1 96.47 ? C45 RIT 602 A 1 
HETATM 25 C C48 RIT . . . C 3 19.278 32.966 141.519 1 94.43 ? C48 RIT 602 A 1 
HETATM 26 C C49 RIT . . . C 3 19.514 32.286 142.715 1 96.27 ? C49 RIT 602 A 1 
HETATM 27 C C50 RIT . . . C 3 19.384 30.893 142.74 1 96.12 ? C50 RIT 602 A 1 
HETATM 28 C C51 RIT . . . C 3 19.032 30.185 141.584 1 97.98 ? C51 RIT 602 A 1 
HETATM 29 C C52 RIT . . . C 3 18.806 30.864 140.38 1 96.84 ? C52 RIT 602 A 1 
HETATM 30 N N58 RIT . . . C 3 20.696 34.448 139.418 1 102.94 ? N58 RIT 602 A 1 
HETATM 31 N N20 RIT . . . C 3 23.891 35.713 140.347 1 120.96 ? N20 RIT 602 A 1 
HETATM 32 C C19 RIT . . . C 3 22.681 35.223 141.051 1 113 ? C19 RIT 602 A 1 
HETATM 33 C C18 RIT . . . C 3 21.978 34.2 140.111 1 104.56 ? C18 RIT 602 A 1 
HETATM 34 O O61 RIT . . . C 3 22.517 33.136 139.927 1 98.21 ? O61 RIT 602 A 1 
HETATM 35 C C62 RIT . . . C 3 21.765 36.388 141.544 1 114.69 ? C62 RIT 602 A 1 
HETATM 36 C C64 RIT . . . C 3 20.722 35.931 142.587 1 113.51 ? C64 RIT 602 A 1 
HETATM 37 C C68 RIT . . . C 3 22.553 37.567 142.153 1 113.49 ? C68 RIT 602 A 1 
HETATM 38 C C21 RIT . . . C 3 25.265 35.366 140.782 1 128.26 ? C21 RIT 602 A 1 
HETATM 39 N N74 RIT . . . C 3 26.443 35.876 140.046 1 131.96 ? N74 RIT 602 A 1 
HETATM 40 C C75 RIT . . . C 3 26.288 36.73 138.864 1 150.12 ? C75 RIT 602 A 1 
HETATM 41 O O76 RIT . . . C 3 25.431 34.662 141.755 1 129.73 ? O76 RIT 602 A 1 
HETATM 42 C C77 RIT . . . C 3 26.376 38.237 139.191 1 167.58 ? C77 RIT 602 A 1 
HETATM 43 C C80 RIT . . . C 3 25.701 38.808 140.282 1 172.89 ? C80 RIT 602 A 1 
HETATM 44 S S81 RIT . . . C 3 26.105 40.458 140.198 1 182.64 ? S81 RIT 602 A 1 
HETATM 45 C C82 RIT . . . C 3 27.079 40.375 138.815 1 179.55 ? C82 RIT 602 A 1 
HETATM 46 N N83 RIT . . . C 3 27.096 39.087 138.435 1 173.99 ? N83 RIT 602 A 1 
HETATM 47 C C85 RIT . . . C 3 27.823 41.539 138.125 1 178.39 ? C85 RIT 602 A 1 
HETATM 48 C C86 RIT . . . C 3 27.003 42.854 138.125 1 174.12 ? C86 RIT 602 A 1 
HETATM 49 C C90 RIT . . . C 3 29.184 41.771 138.813 1 178.22 ? C90 RIT 602 A 1 
HETATM 50 C C95 RIT . . . C 3 27.808 35.537 140.464 1 130.95 ? C95 RIT 602 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           50 
#