data_5VCE # _model_server_result.job_id UB-ql38quy0V-tXXBnr1hA _model_server_result.datetime_utc '2024-11-05 11:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5VCE # _exptl.entry_id 5VCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 720.944 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RITONAVIR _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VCE _cell.length_a 77.37 _cell.length_b 100.71 _cell.length_c 129.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 77.37 100.71 0 3 'crystal symmetry operation' 3_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 77.37 0 258.44 4 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 100.71 258.44 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N5 RIT . A RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C37 H48 N6 O5 S2' _chem_comp.formula_weight 720.944 _chem_comp.id RIT _chem_comp.mon_nstd_flag . _chem_comp.name RITONAVIR _chem_comp.type peptide-like _chem_comp.pdbx_synonyms A-84538 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RIT doub 359 n y C1 N5 RIT sing 360 n y C1 H1 RIT sing 361 n n C2 S3 RIT sing 362 n y C2 C6 RIT sing 363 n n S3 C4 RIT sing 364 n y C4 N5 RIT doub 365 n y C4 H4 RIT sing 366 n n C6 O7 RIT sing 367 n n C6 H61 RIT sing 368 n n C6 H62A RIT sing 369 n n O7 C10 RIT sing 370 n n C10 N11 RIT sing 371 n n C10 O24 RIT doub 372 n n N11 C12 RIT sing 373 n n N11 H11 RIT sing 374 n n C12 C13 RIT sing 375 n n C12 C26 RIT sing 376 n n C12 H12 RIT sing 377 n n C13 C14 RIT sing 378 n n C13 O41 RIT sing 379 n n C13 H13 RIT sing 380 n n C14 C15 RIT sing 381 n n C14 H141 RIT sing 382 n n C14 H142 RIT sing 383 n n C15 C44 RIT sing 384 n n C15 N58 RIT sing 385 n n C15 H15 RIT sing 386 n n C18 C19 RIT sing 387 n n C18 N58 RIT sing 388 n n C18 O61 RIT doub 389 n n C19 N20 RIT sing 390 n n C19 C62 RIT sing 391 n n C19 H19 RIT sing 392 n n N20 C21 RIT sing 393 n n N20 H20 RIT sing 394 n n C21 N74 RIT sing 395 n n C21 O76 RIT doub 396 n n C26 C28 RIT sing 397 n n C26 H261 RIT sing 398 n n C26 H262 RIT sing 399 n n C28 C31 RIT doub 400 n y C28 C35 RIT sing 401 n y C31 C32 RIT sing 402 n y C31 H31 RIT sing 403 n n C32 C33 RIT doub 404 n y C32 H32 RIT sing 405 n n C33 C34 RIT sing 406 n y C33 H33 RIT sing 407 n n C34 C35 RIT doub 408 n y C34 H34 RIT sing 409 n n C35 H35 RIT sing 410 n n O41 HO4 RIT sing 411 n n C44 C45 RIT sing 412 n n C44 H441 RIT sing 413 n n C44 H442 RIT sing 414 n n C45 C48 RIT doub 415 n y C45 C52 RIT sing 416 n y C48 C49 RIT sing 417 n y C48 H48 RIT sing 418 n n C49 C50 RIT doub 419 n y C49 H49 RIT sing 420 n n C50 C51 RIT sing 421 n y C50 H50 RIT sing 422 n n C51 C52 RIT doub 423 n y C51 H51 RIT sing 424 n n C52 H52 RIT sing 425 n n N58 H58 RIT sing 426 n n C62 C64 RIT sing 427 n n C62 C68 RIT sing 428 n n C62 H62 RIT sing 429 n n C64 H641 RIT sing 430 n n C64 H642 RIT sing 431 n n C64 H643 RIT sing 432 n n C68 H681 RIT sing 433 n n C68 H682 RIT sing 434 n n C68 H683 RIT sing 435 n n N74 C75 RIT sing 436 n n N74 C95 RIT sing 437 n n C75 C77 RIT sing 438 n n C75 H751 RIT sing 439 n n C75 H752 RIT sing 440 n n C77 C80 RIT doub 441 n y C77 N83 RIT sing 442 n y C80 S81 RIT sing 443 n y C80 H80 RIT sing 444 n n S81 C82 RIT sing 445 n y C82 N83 RIT doub 446 n y C82 C85 RIT sing 447 n n C85 C86 RIT sing 448 n n C85 C90 RIT sing 449 n n C85 H85 RIT sing 450 n n C86 H861 RIT sing 451 n n C86 H862 RIT sing 452 n n C86 H863 RIT sing 453 n n C90 H901 RIT sing 454 n n C90 H902 RIT sing 455 n n C90 H903 RIT sing 456 n n C95 H951 RIT sing 457 n n C95 H952 RIT sing 458 n n C95 H953 RIT sing 459 n n # _atom_sites.entry_id 5VCE _atom_sites.fract_transf_matrix[1][1] 0.012925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 RIT A 1 602 602 RIT RIT . D 4 HOH A 1 701 10 HOH HOH . D 4 HOH A 2 702 14 HOH HOH . D 4 HOH A 3 703 9 HOH HOH . D 4 HOH A 4 704 2 HOH HOH . D 4 HOH A 5 705 16 HOH HOH . D 4 HOH A 6 706 1 HOH HOH . D 4 HOH A 7 707 4 HOH HOH . D 4 HOH A 8 708 5 HOH HOH . D 4 HOH A 9 709 6 HOH HOH . D 4 HOH A 10 710 11 HOH HOH . D 4 HOH A 11 711 8 HOH HOH . D 4 HOH A 12 712 7 HOH HOH . D 4 HOH A 13 713 17 HOH HOH . D 4 HOH A 14 714 3 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 13 HOH HOH . D 4 HOH A 17 717 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIT . . . C 3 17.883 27.422 137.843 1 68.57 ? C1 RIT 602 A 1 HETATM 2 C C2 RIT . . . C 3 19.201 27.601 137.716 1 72.09 ? C2 RIT 602 A 1 HETATM 3 S S3 RIT . . . C 3 19.77 27.607 139.315 1 66.44 ? S3 RIT 602 A 1 HETATM 4 C C4 RIT . . . C 3 18.261 27.358 140.022 1 62.11 ? C4 RIT 602 A 1 HETATM 5 N N5 RIT . . . C 3 17.414 27.288 138.997 1 62.52 ? N5 RIT 602 A 1 HETATM 6 C C6 RIT . . . C 3 19.994 27.785 136.421 1 80.25 ? C6 RIT 602 A 1 HETATM 7 O O7 RIT . . . C 3 20.824 28.934 136.64 1 95.12 ? O7 RIT 602 A 1 HETATM 8 C C10 RIT . . . C 3 20.213 30.212 136.435 1 93.4 ? C10 RIT 602 A 1 HETATM 9 O O24 RIT . . . C 3 19.145 30.502 136.935 1 98 ? O24 RIT 602 A 1 HETATM 10 N N11 RIT . . . C 3 20.957 31.216 135.676 1 95.44 ? N11 RIT 602 A 1 HETATM 11 C C12 RIT . . . C 3 21.848 32.176 136.35 1 94.9 ? C12 RIT 602 A 1 HETATM 12 C C13 RIT . . . C 3 21.279 33.596 136.177 1 92.06 ? C13 RIT 602 A 1 HETATM 13 C C14 RIT . . . C 3 20.058 33.838 137.083 1 98.65 ? C14 RIT 602 A 1 HETATM 14 C C15 RIT . . . C 3 20.112 33.399 138.551 1 97.26 ? C15 RIT 602 A 1 HETATM 15 C C26 RIT . . . C 3 23.276 32.153 135.76 1 89.74 ? C26 RIT 602 A 1 HETATM 16 C C28 RIT . . . C 3 23.854 30.767 135.431 1 83.48 ? C28 RIT 602 A 1 HETATM 17 C C31 RIT . . . C 3 24.763 30.167 136.307 1 79.46 ? C31 RIT 602 A 1 HETATM 18 C C32 RIT . . . C 3 25.292 28.912 135.99 1 85.78 ? C32 RIT 602 A 1 HETATM 19 C C33 RIT . . . C 3 24.913 28.263 134.805 1 85.66 ? C33 RIT 602 A 1 HETATM 20 C C34 RIT . . . C 3 24.003 28.862 133.929 1 89.79 ? C34 RIT 602 A 1 HETATM 21 C C35 RIT . . . C 3 23.486 30.125 134.239 1 87.81 ? C35 RIT 602 A 1 HETATM 22 O O41 RIT . . . C 3 20.945 33.735 135.026 1 90.82 ? O41 RIT 602 A 1 HETATM 23 C C44 RIT . . . C 3 18.707 33.013 139.042 1 94.42 ? C44 RIT 602 A 1 HETATM 24 C C45 RIT . . . C 3 18.928 32.255 140.356 1 96.47 ? C45 RIT 602 A 1 HETATM 25 C C48 RIT . . . C 3 19.278 32.966 141.519 1 94.43 ? C48 RIT 602 A 1 HETATM 26 C C49 RIT . . . C 3 19.514 32.286 142.715 1 96.27 ? C49 RIT 602 A 1 HETATM 27 C C50 RIT . . . C 3 19.384 30.893 142.74 1 96.12 ? C50 RIT 602 A 1 HETATM 28 C C51 RIT . . . C 3 19.032 30.185 141.584 1 97.98 ? C51 RIT 602 A 1 HETATM 29 C C52 RIT . . . C 3 18.806 30.864 140.38 1 96.84 ? C52 RIT 602 A 1 HETATM 30 N N58 RIT . . . C 3 20.696 34.448 139.418 1 102.94 ? N58 RIT 602 A 1 HETATM 31 N N20 RIT . . . C 3 23.891 35.713 140.347 1 120.96 ? N20 RIT 602 A 1 HETATM 32 C C19 RIT . . . C 3 22.681 35.223 141.051 1 113 ? C19 RIT 602 A 1 HETATM 33 C C18 RIT . . . C 3 21.978 34.2 140.111 1 104.56 ? C18 RIT 602 A 1 HETATM 34 O O61 RIT . . . C 3 22.517 33.136 139.927 1 98.21 ? O61 RIT 602 A 1 HETATM 35 C C62 RIT . . . C 3 21.765 36.388 141.544 1 114.69 ? C62 RIT 602 A 1 HETATM 36 C C64 RIT . . . C 3 20.722 35.931 142.587 1 113.51 ? C64 RIT 602 A 1 HETATM 37 C C68 RIT . . . C 3 22.553 37.567 142.153 1 113.49 ? C68 RIT 602 A 1 HETATM 38 C C21 RIT . . . C 3 25.265 35.366 140.782 1 128.26 ? C21 RIT 602 A 1 HETATM 39 N N74 RIT . . . C 3 26.443 35.876 140.046 1 131.96 ? N74 RIT 602 A 1 HETATM 40 C C75 RIT . . . C 3 26.288 36.73 138.864 1 150.12 ? C75 RIT 602 A 1 HETATM 41 O O76 RIT . . . C 3 25.431 34.662 141.755 1 129.73 ? O76 RIT 602 A 1 HETATM 42 C C77 RIT . . . C 3 26.376 38.237 139.191 1 167.58 ? C77 RIT 602 A 1 HETATM 43 C C80 RIT . . . C 3 25.701 38.808 140.282 1 172.89 ? C80 RIT 602 A 1 HETATM 44 S S81 RIT . . . C 3 26.105 40.458 140.198 1 182.64 ? S81 RIT 602 A 1 HETATM 45 C C82 RIT . . . C 3 27.079 40.375 138.815 1 179.55 ? C82 RIT 602 A 1 HETATM 46 N N83 RIT . . . C 3 27.096 39.087 138.435 1 173.99 ? N83 RIT 602 A 1 HETATM 47 C C85 RIT . . . C 3 27.823 41.539 138.125 1 178.39 ? C85 RIT 602 A 1 HETATM 48 C C86 RIT . . . C 3 27.003 42.854 138.125 1 174.12 ? C86 RIT 602 A 1 HETATM 49 C C90 RIT . . . C 3 29.184 41.771 138.813 1 178.22 ? C90 RIT 602 A 1 HETATM 50 C C95 RIT . . . C 3 27.808 35.537 140.464 1 130.95 ? C95 RIT 602 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 50 #