data_5VCG # _model_server_result.job_id 8UacnPYtqR912-DNRXLeOA _model_server_result.datetime_utc '2024-11-08 04:34:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 5VCG # _exptl.entry_id 5VCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VCG _cell.length_a 76.539 _cell.length_b 100.459 _cell.length_c 133.679 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -77.34 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.34 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.3 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 218 n n C1 C2 GOL sing 219 n n C1 H11 GOL sing 220 n n C1 H12 GOL sing 221 n n O1 HO1 GOL sing 222 n n C2 O2 GOL sing 223 n n C2 C3 GOL sing 224 n n C2 H2 GOL sing 225 n n O2 HO2 GOL sing 226 n n C3 O3 GOL sing 227 n n C3 H31 GOL sing 228 n n C3 H32 GOL sing 229 n n O3 HO3 GOL sing 230 n n # _atom_sites.entry_id 5VCG _atom_sites.fract_transf_matrix[1][1] 0.013065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 599 HEM HEM . C 3 08Y A 1 602 600 08Y 08Y . D 4 GOL A 1 603 700 GOL GOL . E 4 GOL A 1 604 701 GOL GOL . F 4 GOL A 1 605 702 GOL GOL . G 4 GOL A 1 606 703 GOL GOL . H 5 HOH A 1 701 4 HOH HOH . H 5 HOH A 2 702 33 HOH HOH . H 5 HOH A 3 703 76 HOH HOH . H 5 HOH A 4 704 49 HOH HOH . H 5 HOH A 5 705 55 HOH HOH . H 5 HOH A 6 706 57 HOH HOH . H 5 HOH A 7 707 52 HOH HOH . H 5 HOH A 8 708 28 HOH HOH . H 5 HOH A 9 709 46 HOH HOH . H 5 HOH A 10 710 45 HOH HOH . H 5 HOH A 11 711 6 HOH HOH . H 5 HOH A 12 712 10 HOH HOH . H 5 HOH A 13 713 51 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 1 HOH HOH . H 5 HOH A 16 716 60 HOH HOH . H 5 HOH A 17 717 38 HOH HOH . H 5 HOH A 18 718 53 HOH HOH . H 5 HOH A 19 719 30 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 19 HOH HOH . H 5 HOH A 22 722 21 HOH HOH . H 5 HOH A 23 723 65 HOH HOH . H 5 HOH A 24 724 11 HOH HOH . H 5 HOH A 25 725 68 HOH HOH . H 5 HOH A 26 726 42 HOH HOH . H 5 HOH A 27 727 17 HOH HOH . H 5 HOH A 28 728 61 HOH HOH . H 5 HOH A 29 729 5 HOH HOH . H 5 HOH A 30 730 22 HOH HOH . H 5 HOH A 31 731 16 HOH HOH . H 5 HOH A 32 732 47 HOH HOH . H 5 HOH A 33 733 67 HOH HOH . H 5 HOH A 34 734 66 HOH HOH . H 5 HOH A 35 735 39 HOH HOH . H 5 HOH A 36 736 31 HOH HOH . H 5 HOH A 37 737 71 HOH HOH . H 5 HOH A 38 738 54 HOH HOH . H 5 HOH A 39 739 15 HOH HOH . H 5 HOH A 40 740 29 HOH HOH . H 5 HOH A 41 741 2 HOH HOH . H 5 HOH A 42 742 69 HOH HOH . H 5 HOH A 43 743 73 HOH HOH . H 5 HOH A 44 744 36 HOH HOH . H 5 HOH A 45 745 64 HOH HOH . H 5 HOH A 46 746 9 HOH HOH . H 5 HOH A 47 747 40 HOH HOH . H 5 HOH A 48 748 32 HOH HOH . H 5 HOH A 49 749 13 HOH HOH . H 5 HOH A 50 750 62 HOH HOH . H 5 HOH A 51 751 72 HOH HOH . H 5 HOH A 52 752 75 HOH HOH . H 5 HOH A 53 753 34 HOH HOH . H 5 HOH A 54 754 70 HOH HOH . H 5 HOH A 55 755 25 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . H 5 HOH A 57 757 18 HOH HOH . H 5 HOH A 58 758 63 HOH HOH . H 5 HOH A 59 759 37 HOH HOH . H 5 HOH A 60 760 43 HOH HOH . H 5 HOH A 61 761 44 HOH HOH . H 5 HOH A 62 762 24 HOH HOH . H 5 HOH A 63 763 23 HOH HOH . H 5 HOH A 64 764 48 HOH HOH . H 5 HOH A 65 765 27 HOH HOH . H 5 HOH A 66 766 74 HOH HOH . H 5 HOH A 67 767 59 HOH HOH . H 5 HOH A 68 768 26 HOH HOH . H 5 HOH A 69 769 12 HOH HOH . H 5 HOH A 70 770 58 HOH HOH . H 5 HOH A 71 771 41 HOH HOH . H 5 HOH A 72 772 35 HOH HOH . H 5 HOH A 73 773 50 HOH HOH . H 5 HOH A 74 774 7 HOH HOH . H 5 HOH A 75 775 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -27.533 -18.886 -22.925 1 63.19 ? C1 GOL 606 A 1 HETATM 2 O O1 GOL . . . G 4 -27.571 -17.494 -22.594 1 61.38 ? O1 GOL 606 A 1 HETATM 3 C C2 GOL . . . G 4 -28.302 -19.193 -24.206 1 68.23 ? C2 GOL 606 A 1 HETATM 4 O O2 GOL . . . G 4 -27.597 -20.255 -24.87 1 69.73 ? O2 GOL 606 A 1 HETATM 5 C C3 GOL . . . G 4 -28.513 -18.025 -25.181 1 67.83 ? C3 GOL 606 A 1 HETATM 6 O O3 GOL . . . G 4 -27.608 -16.952 -24.902 1 67.53 ? O3 GOL 606 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #