data_5VCW
#
_model_server_result.job_id            ZUwzPvvzrxXlw776Bx3Ssw 
_model_server_result.datetime_utc      '2024-11-24 14:12:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vcw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    5VCW 
#
_exptl.entry_id    5VCW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.27 
_cell.angle_gamma         90 
_cell.entry_id            5VCW 
_cell.length_a            50.51 
_cell.length_b            112.9 
_cell.length_c            72.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VCW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,N 1 1 
B,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 M N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 141 n n 
C1 C2 EDO sing 142 n n 
C1 H11 EDO sing 143 n n 
C1 H12 EDO sing 144 n n 
O1 HO1 EDO sing 145 n n 
C2 O2 EDO sing 146 n n 
C2 H21 EDO sing 147 n n 
C2 H22 EDO sing 148 n n 
O2 HO2 EDO sing 149 n n 
#
_atom_sites.entry_id                     5VCW 
_atom_sites.fract_transf_matrix[1][1]    0.019798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006922 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 93J A 1 401 1 93J LIG . 
D 3 SO4 A 1 402 3 SO4 SO4 . 
E 4 EDO A 1 403 1 EDO EDO . 
F 4 EDO A 1 404 3 EDO EDO . 
G 4 EDO A 1 405 4 EDO EDO . 
H 2 93J B 1 401 2 93J LIG . 
I 3 SO4 B 1 402 1 SO4 SO4 . 
J 3 SO4 B 1 403 2 SO4 SO4 . 
K 3 SO4 B 1 404 4 SO4 SO4 . 
L 3 SO4 B 1 405 5 SO4 SO4 . 
M 4 EDO B 1 406 2 EDO EDO . 
N 5 HOH A 1 501 19 HOH HOH . 
N 5 HOH A 2 502 52 HOH HOH . 
N 5 HOH A 3 503 38 HOH HOH . 
N 5 HOH A 4 504 45 HOH HOH . 
N 5 HOH A 5 505 17 HOH HOH . 
N 5 HOH A 6 506 6 HOH HOH . 
N 5 HOH A 7 507 16 HOH HOH . 
N 5 HOH A 8 508 33 HOH HOH . 
N 5 HOH A 9 509 7 HOH HOH . 
N 5 HOH A 10 510 2 HOH HOH . 
N 5 HOH A 11 511 34 HOH HOH . 
N 5 HOH A 12 512 15 HOH HOH . 
N 5 HOH A 13 513 18 HOH HOH . 
N 5 HOH A 14 514 3 HOH HOH . 
N 5 HOH A 15 515 40 HOH HOH . 
N 5 HOH A 16 516 37 HOH HOH . 
N 5 HOH A 17 517 4 HOH HOH . 
N 5 HOH A 18 518 47 HOH HOH . 
N 5 HOH A 19 519 31 HOH HOH . 
N 5 HOH A 20 520 36 HOH HOH . 
N 5 HOH A 21 521 46 HOH HOH . 
N 5 HOH A 22 522 42 HOH HOH . 
N 5 HOH A 23 523 41 HOH HOH . 
N 5 HOH A 24 524 11 HOH HOH . 
N 5 HOH A 25 525 44 HOH HOH . 
O 5 HOH B 1 501 10 HOH HOH . 
O 5 HOH B 2 502 32 HOH HOH . 
O 5 HOH B 3 503 12 HOH HOH . 
O 5 HOH B 4 504 26 HOH HOH . 
O 5 HOH B 5 505 39 HOH HOH . 
O 5 HOH B 6 506 28 HOH HOH . 
O 5 HOH B 7 507 1 HOH HOH . 
O 5 HOH B 8 508 5 HOH HOH . 
O 5 HOH B 9 509 51 HOH HOH . 
O 5 HOH B 10 510 50 HOH HOH . 
O 5 HOH B 11 511 23 HOH HOH . 
O 5 HOH B 12 512 20 HOH HOH . 
O 5 HOH B 13 513 9 HOH HOH . 
O 5 HOH B 14 514 8 HOH HOH . 
O 5 HOH B 15 515 24 HOH HOH . 
O 5 HOH B 16 516 14 HOH HOH . 
O 5 HOH B 17 517 30 HOH HOH . 
O 5 HOH B 18 518 25 HOH HOH . 
O 5 HOH B 19 519 48 HOH HOH . 
O 5 HOH B 20 520 21 HOH HOH . 
O 5 HOH B 21 521 22 HOH HOH . 
O 5 HOH B 22 522 49 HOH HOH . 
O 5 HOH B 23 523 27 HOH HOH . 
O 5 HOH B 24 524 29 HOH HOH . 
O 5 HOH B 25 525 13 HOH HOH . 
O 5 HOH B 26 526 35 HOH HOH . 
O 5 HOH B 27 527 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 20.675 10.294 -10.563 1 73.48 ? C1 EDO 403 A 1 
HETATM 2 O O1 EDO . . . E 4 19.74 9.995 -9.524 1 73.64 ? O1 EDO 403 A 1 
HETATM 3 C C2 EDO . . . E 4 22.065 9.861 -10.119 1 76.32 ? C2 EDO 403 A 1 
HETATM 4 O O2 EDO . . . E 4 22.604 10.805 -9.183 1 74.61 ? O2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           140 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#