data_5VCX # _model_server_result.job_id i8u4LsjabDiB-mSuRUC2YA _model_server_result.datetime_utc '2024-10-11 01:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5VCX # _exptl.entry_id 5VCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 542.026 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VCX _cell.length_a 56.48 _cell.length_b 69.43 _cell.length_c 86.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 Cl N5 O5' _chem_comp.formula_weight 542.026 _chem_comp.id H8H _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-7-[2-(4-METHYLPIPERAZIN-1-YL)ETHOXY]-5-(TETRAHYDRO-2H-PYRAN-4-YLOXY)QUINAZOLIN-4-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SARACATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 H8H sing 138 n n C1 H11 H8H sing 139 n n C1 H12 H8H sing 140 n n C1 H13A H8H sing 141 n n N2 C3 H8H sing 142 n n N2 C38 H8H sing 143 n n C3 C4 H8H sing 144 n n C3 H31 H8H sing 145 n n C3 H32 H8H sing 146 n n C4 N5 H8H sing 147 n n C4 H41 H8H sing 148 n n C4 H42 H8H sing 149 n n N5 C6 H8H sing 150 n n N5 C37 H8H sing 151 n n C6 C7 H8H sing 152 n n C6 H61 H8H sing 153 n n C6 H62 H8H sing 154 n n C7 O8 H8H sing 155 n n C7 H71 H8H sing 156 n n C7 H72 H8H sing 157 n n O8 C9 H8H sing 158 n n C9 C10 H8H sing 159 n y C9 C36 H8H doub 160 n y C10 C11 H8H doub 161 n y C10 H10 H8H sing 162 n n C11 O12 H8H sing 163 n n C11 C19 H8H sing 164 n y O12 C13 H8H sing 165 n n C13 C14 H8H sing 166 n n C13 C18 H8H sing 167 n n C13 H13 H8H sing 168 n n C14 C15 H8H sing 169 n n C14 H141 H8H sing 170 n n C14 H142 H8H sing 171 n n C15 O16 H8H sing 172 n n C15 H151 H8H sing 173 n n C15 H152 H8H sing 174 n n O16 C17 H8H sing 175 n n C17 C18 H8H sing 176 n n C17 H171 H8H sing 177 n n C17 H172 H8H sing 178 n n C18 H181 H8H sing 179 n n C18 H182 H8H sing 180 n n C19 C20 H8H doub 181 n y C19 C35 H8H sing 182 n y C20 N21 H8H sing 183 n n C20 N32 H8H sing 184 n y N21 C22 H8H sing 185 n n N21 HN21 H8H sing 186 n n C22 C23 H8H sing 187 n y C22 C30 H8H doub 188 n y C23 O24 H8H sing 189 n n C23 C27 H8H doub 190 n y O24 C25 H8H sing 191 n n C25 O26 H8H sing 192 n n C25 H251 H8H sing 193 n n C25 H252 H8H sing 194 n n O26 C27 H8H sing 195 n n C27 C28 H8H sing 196 n y C28 C29 H8H doub 197 n y C28 H28 H8H sing 198 n n C29 C30 H8H sing 199 n y C29 H29 H8H sing 200 n n C30 CL3 H8H sing 201 n n N32 C33 H8H doub 202 n y C33 N34 H8H sing 203 n y C33 H33 H8H sing 204 n n N34 C35 H8H doub 205 n y C35 C36 H8H sing 206 n y C36 H36 H8H sing 207 n n C37 C38 H8H sing 208 n n C37 H371 H8H sing 209 n n C37 H372 H8H sing 210 n n C38 H381 H8H sing 211 n n C38 H382 H8H sing 212 n n # _atom_sites.entry_id 5VCX _atom_sites.fract_transf_matrix[1][1] 0.017705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8H A 1 401 1 H8H H8H . C 3 EDO A 1 402 1 EDO EDO . D 4 HOH A 1 501 25 HOH HOH . D 4 HOH A 2 502 20 HOH HOH . D 4 HOH A 3 503 5 HOH HOH . D 4 HOH A 4 504 30 HOH HOH . D 4 HOH A 5 505 27 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 12 HOH HOH . D 4 HOH A 8 508 11 HOH HOH . D 4 HOH A 9 509 3 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 18 HOH HOH . D 4 HOH A 12 512 1 HOH HOH . D 4 HOH A 13 513 28 HOH HOH . D 4 HOH A 14 514 22 HOH HOH . D 4 HOH A 15 515 2 HOH HOH . D 4 HOH A 16 516 14 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 15 HOH HOH . D 4 HOH A 19 519 10 HOH HOH . D 4 HOH A 20 520 6 HOH HOH . D 4 HOH A 21 521 16 HOH HOH . D 4 HOH A 22 522 31 HOH HOH . D 4 HOH A 23 523 13 HOH HOH . D 4 HOH A 24 524 9 HOH HOH . D 4 HOH A 25 525 23 HOH HOH . D 4 HOH A 26 526 8 HOH HOH . D 4 HOH A 27 527 19 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 32 HOH HOH . D 4 HOH A 30 530 4 HOH HOH . D 4 HOH A 31 531 21 HOH HOH . D 4 HOH A 32 532 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H8H . . . B 2 17.379 11.749 8.598 1 53.72 ? C1 H8H 401 A 1 HETATM 2 N N2 H8H . . . B 2 18.262 11.77 7.397 1 53.08 ? N2 H8H 401 A 1 HETATM 3 C C3 H8H . . . B 2 17.612 11.152 6.202 1 53.29 ? C3 H8H 401 A 1 HETATM 4 C C4 H8H . . . B 2 18.534 11.252 4.963 1 51.4 ? C4 H8H 401 A 1 HETATM 5 N N5 H8H . . . B 2 19.876 10.662 5.249 1 50.76 ? N5 H8H 401 A 1 HETATM 6 C C6 H8H . . . B 2 20.726 10.555 4.022 1 48.18 ? C6 H8H 401 A 1 HETATM 7 C C7 H8H . . . B 2 21.255 9.132 3.742 1 45.25 ? C7 H8H 401 A 1 HETATM 8 O O8 H8H . . . B 2 20.152 8.224 3.526 1 42.68 ? O8 H8H 401 A 1 HETATM 9 C C9 H8H . . . B 2 20.556 6.986 3.102 1 40.84 ? C9 H8H 401 A 1 HETATM 10 C C10 H8H . . . B 2 19.895 5.807 3.481 1 39.92 ? C10 H8H 401 A 1 HETATM 11 C C11 H8H . . . B 2 20.323 4.503 3.038 1 38.71 ? C11 H8H 401 A 1 HETATM 12 O O12 H8H . . . B 2 19.657 3.314 3.407 1 37.74 ? O12 H8H 401 A 1 HETATM 13 C C13 H8H . . . B 2 18.32 3.487 4.01 1 37.81 ? C13 H8H 401 A 1 HETATM 14 C C14 H8H . . . B 2 17.327 3.476 2.809 1 42.18 ? C14 H8H 401 A 1 HETATM 15 C C15 H8H . . . B 2 16.288 2.338 2.907 1 43.46 ? C15 H8H 401 A 1 HETATM 16 O O16 H8H . . . B 2 16.999 1.113 3.146 1 44.23 ? O16 H8H 401 A 1 HETATM 17 C C17 H8H . . . B 2 17.492 1.019 4.495 1 44.86 ? C17 H8H 401 A 1 HETATM 18 C C18 H8H . . . B 2 18.027 2.362 5.063 1 55.21 ? C18 H8H 401 A 1 HETATM 19 C C19 H8H . . . B 2 21.46 4.426 2.177 1 38.53 ? C19 H8H 401 A 1 HETATM 20 C C20 H8H . . . B 2 22.025 3.227 1.64 1 36.31 ? C20 H8H 401 A 1 HETATM 21 N N21 H8H . . . B 2 21.546 1.965 1.879 1 35.04 ? N21 H8H 401 A 1 HETATM 22 C C22 H8H . . . B 2 22.062 0.775 1.426 1 31.04 ? C22 H8H 401 A 1 HETATM 23 C C23 H8H . . . B 2 23.428 0.396 1.549 1 27.74 ? C23 H8H 401 A 1 HETATM 24 O O24 H8H . . . B 2 24.445 1.09 2.113 1 25.44 ? O24 H8H 401 A 1 HETATM 25 C C25 H8H . . . B 2 25.563 0.188 2.005 1 23.84 ? C25 H8H 401 A 1 HETATM 26 O O26 H8H . . . B 2 25.213 -0.994 1.268 1 27.89 ? O26 H8H 401 A 1 HETATM 27 C C27 H8H . . . B 2 23.895 -0.819 1.059 1 26.72 ? C27 H8H 401 A 1 HETATM 28 C C28 H8H . . . B 2 23.03 -1.721 0.424 1 27.3 ? C28 H8H 401 A 1 HETATM 29 C C29 H8H . . . B 2 21.671 -1.379 0.286 1 28.06 ? C29 H8H 401 A 1 HETATM 30 C C30 H8H . . . B 2 21.187 -0.143 0.779 1 28.65 ? C30 H8H 401 A 1 HETATM 31 CL CL3 H8H . . . B 2 19.536 0.196 0.571 1 30.92 ? CL3 H8H 401 A 1 HETATM 32 N N32 H8H . . . B 2 23.118 3.33 0.834 1 36.74 ? N32 H8H 401 A 1 HETATM 33 C C33 H8H . . . B 2 23.711 4.494 0.506 1 36.77 ? C33 H8H 401 A 1 HETATM 34 N N34 H8H . . . B 2 23.205 5.64 0.998 1 38.75 ? N34 H8H 401 A 1 HETATM 35 C C35 H8H . . . B 2 22.117 5.641 1.808 1 40.15 ? C35 H8H 401 A 1 HETATM 36 C C36 H8H . . . B 2 21.67 6.891 2.261 1 41.42 ? C36 H8H 401 A 1 HETATM 37 C C37 H8H . . . B 2 20.534 11.298 6.431 1 52.8 ? C37 H8H 401 A 1 HETATM 38 C C38 H8H . . . B 2 19.62 11.209 7.674 1 53.89 ? C38 H8H 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #