data_5VCX # _model_server_result.job_id rSdyH7q1cjJS9rnyDj9ROg _model_server_result.datetime_utc '2024-11-28 05:26:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5VCX # _exptl.entry_id 5VCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VCX _cell.length_a 56.48 _cell.length_b 69.43 _cell.length_c 86.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5VCX _atom_sites.fract_transf_matrix[1][1] 0.017705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H8H A 1 401 1 H8H H8H . C 3 EDO A 1 402 1 EDO EDO . D 4 HOH A 1 501 25 HOH HOH . D 4 HOH A 2 502 20 HOH HOH . D 4 HOH A 3 503 5 HOH HOH . D 4 HOH A 4 504 30 HOH HOH . D 4 HOH A 5 505 27 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 12 HOH HOH . D 4 HOH A 8 508 11 HOH HOH . D 4 HOH A 9 509 3 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 18 HOH HOH . D 4 HOH A 12 512 1 HOH HOH . D 4 HOH A 13 513 28 HOH HOH . D 4 HOH A 14 514 22 HOH HOH . D 4 HOH A 15 515 2 HOH HOH . D 4 HOH A 16 516 14 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 15 HOH HOH . D 4 HOH A 19 519 10 HOH HOH . D 4 HOH A 20 520 6 HOH HOH . D 4 HOH A 21 521 16 HOH HOH . D 4 HOH A 22 522 31 HOH HOH . D 4 HOH A 23 523 13 HOH HOH . D 4 HOH A 24 524 9 HOH HOH . D 4 HOH A 25 525 23 HOH HOH . D 4 HOH A 26 526 8 HOH HOH . D 4 HOH A 27 527 19 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 32 HOH HOH . D 4 HOH A 30 530 4 HOH HOH . D 4 HOH A 31 531 21 HOH HOH . D 4 HOH A 32 532 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 17.209 -3.624 2.216 1 51.36 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 18.462 -3.956 1.605 1 51.84 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 16.06 -4.028 1.297 1 52.01 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 15.866 -3.03 0.287 1 51.59 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #