data_5VCY
#
_model_server_result.job_id            d08GEJIaXp7dIyl-8ku7GQ 
_model_server_result.datetime_utc      '2024-11-27 16:59:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5VCY 
#
_exptl.entry_id    5VCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VCY 
_cell.length_a            46.63 
_cell.length_b            55 
_cell.length_c            113.66 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 160 n n 
C1 C2 EDO sing 161 n n 
C1 H11 EDO sing 162 n n 
C1 H12 EDO sing 163 n n 
O1 HO1 EDO sing 164 n n 
C2 O2 EDO sing 165 n n 
C2 H21 EDO sing 166 n n 
C2 H22 EDO sing 167 n n 
O2 HO2 EDO sing 168 n n 
#
_atom_sites.entry_id                     5VCY 
_atom_sites.fract_transf_matrix[1][1]    0.021445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DB8 A 1 401 1 DB8 DB8 . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 2 EDO EDO . 
E 3 EDO A 1 404 3 EDO EDO . 
F 4 PEG A 1 405 1 PEG PEG . 
G 5 DMS A 1 406 1 DMS DMS . 
H 6 HOH A 1 501 185 HOH HOH . 
H 6 HOH A 2 502 152 HOH HOH . 
H 6 HOH A 3 503 192 HOH HOH . 
H 6 HOH A 4 504 110 HOH HOH . 
H 6 HOH A 5 505 187 HOH HOH . 
H 6 HOH A 6 506 66 HOH HOH . 
H 6 HOH A 7 507 218 HOH HOH . 
H 6 HOH A 8 508 216 HOH HOH . 
H 6 HOH A 9 509 116 HOH HOH . 
H 6 HOH A 10 510 186 HOH HOH . 
H 6 HOH A 11 511 220 HOH HOH . 
H 6 HOH A 12 512 139 HOH HOH . 
H 6 HOH A 13 513 199 HOH HOH . 
H 6 HOH A 14 514 158 HOH HOH . 
H 6 HOH A 15 515 203 HOH HOH . 
H 6 HOH A 16 516 82 HOH HOH . 
H 6 HOH A 17 517 98 HOH HOH . 
H 6 HOH A 18 518 78 HOH HOH . 
H 6 HOH A 19 519 147 HOH HOH . 
H 6 HOH A 20 520 168 HOH HOH . 
H 6 HOH A 21 521 92 HOH HOH . 
H 6 HOH A 22 522 151 HOH HOH . 
H 6 HOH A 23 523 42 HOH HOH . 
H 6 HOH A 24 524 231 HOH HOH . 
H 6 HOH A 25 525 230 HOH HOH . 
H 6 HOH A 26 526 65 HOH HOH . 
H 6 HOH A 27 527 204 HOH HOH . 
H 6 HOH A 28 528 57 HOH HOH . 
H 6 HOH A 29 529 9 HOH HOH . 
H 6 HOH A 30 530 31 HOH HOH . 
H 6 HOH A 31 531 5 HOH HOH . 
H 6 HOH A 32 532 100 HOH HOH . 
H 6 HOH A 33 533 191 HOH HOH . 
H 6 HOH A 34 534 16 HOH HOH . 
H 6 HOH A 35 535 133 HOH HOH . 
H 6 HOH A 36 536 182 HOH HOH . 
H 6 HOH A 37 537 126 HOH HOH . 
H 6 HOH A 38 538 229 HOH HOH . 
H 6 HOH A 39 539 202 HOH HOH . 
H 6 HOH A 40 540 106 HOH HOH . 
H 6 HOH A 41 541 121 HOH HOH . 
H 6 HOH A 42 542 129 HOH HOH . 
H 6 HOH A 43 543 3 HOH HOH . 
H 6 HOH A 44 544 96 HOH HOH . 
H 6 HOH A 45 545 72 HOH HOH . 
H 6 HOH A 46 546 67 HOH HOH . 
H 6 HOH A 47 547 50 HOH HOH . 
H 6 HOH A 48 548 85 HOH HOH . 
H 6 HOH A 49 549 124 HOH HOH . 
H 6 HOH A 50 550 80 HOH HOH . 
H 6 HOH A 51 551 87 HOH HOH . 
H 6 HOH A 52 552 130 HOH HOH . 
H 6 HOH A 53 553 45 HOH HOH . 
H 6 HOH A 54 554 214 HOH HOH . 
H 6 HOH A 55 555 165 HOH HOH . 
H 6 HOH A 56 556 122 HOH HOH . 
H 6 HOH A 57 557 127 HOH HOH . 
H 6 HOH A 58 558 205 HOH HOH . 
H 6 HOH A 59 559 179 HOH HOH . 
H 6 HOH A 60 560 176 HOH HOH . 
H 6 HOH A 61 561 43 HOH HOH . 
H 6 HOH A 62 562 18 HOH HOH . 
H 6 HOH A 63 563 144 HOH HOH . 
H 6 HOH A 64 564 215 HOH HOH . 
H 6 HOH A 65 565 73 HOH HOH . 
H 6 HOH A 66 566 170 HOH HOH . 
H 6 HOH A 67 567 173 HOH HOH . 
H 6 HOH A 68 568 109 HOH HOH . 
H 6 HOH A 69 569 226 HOH HOH . 
H 6 HOH A 70 570 136 HOH HOH . 
H 6 HOH A 71 571 193 HOH HOH . 
H 6 HOH A 72 572 58 HOH HOH . 
H 6 HOH A 73 573 77 HOH HOH . 
H 6 HOH A 74 574 7 HOH HOH . 
H 6 HOH A 75 575 164 HOH HOH . 
H 6 HOH A 76 576 4 HOH HOH . 
H 6 HOH A 77 577 134 HOH HOH . 
H 6 HOH A 78 578 81 HOH HOH . 
H 6 HOH A 79 579 55 HOH HOH . 
H 6 HOH A 80 580 10 HOH HOH . 
H 6 HOH A 81 581 36 HOH HOH . 
H 6 HOH A 82 582 149 HOH HOH . 
H 6 HOH A 83 583 49 HOH HOH . 
H 6 HOH A 84 584 184 HOH HOH . 
H 6 HOH A 85 585 150 HOH HOH . 
H 6 HOH A 86 586 171 HOH HOH . 
H 6 HOH A 87 587 76 HOH HOH . 
H 6 HOH A 88 588 201 HOH HOH . 
H 6 HOH A 89 589 208 HOH HOH . 
H 6 HOH A 90 590 120 HOH HOH . 
H 6 HOH A 91 591 51 HOH HOH . 
H 6 HOH A 92 592 163 HOH HOH . 
H 6 HOH A 93 593 148 HOH HOH . 
H 6 HOH A 94 594 196 HOH HOH . 
H 6 HOH A 95 595 99 HOH HOH . 
H 6 HOH A 96 596 89 HOH HOH . 
H 6 HOH A 97 597 46 HOH HOH . 
H 6 HOH A 98 598 137 HOH HOH . 
H 6 HOH A 99 599 17 HOH HOH . 
H 6 HOH A 100 600 22 HOH HOH . 
H 6 HOH A 101 601 14 HOH HOH . 
H 6 HOH A 102 602 23 HOH HOH . 
H 6 HOH A 103 603 194 HOH HOH . 
H 6 HOH A 104 604 21 HOH HOH . 
H 6 HOH A 105 605 59 HOH HOH . 
H 6 HOH A 106 606 2 HOH HOH . 
H 6 HOH A 107 607 236 HOH HOH . 
H 6 HOH A 108 608 86 HOH HOH . 
H 6 HOH A 109 609 169 HOH HOH . 
H 6 HOH A 110 610 27 HOH HOH . 
H 6 HOH A 111 611 63 HOH HOH . 
H 6 HOH A 112 612 35 HOH HOH . 
H 6 HOH A 113 613 28 HOH HOH . 
H 6 HOH A 114 614 95 HOH HOH . 
H 6 HOH A 115 615 48 HOH HOH . 
H 6 HOH A 116 616 47 HOH HOH . 
H 6 HOH A 117 617 6 HOH HOH . 
H 6 HOH A 118 618 53 HOH HOH . 
H 6 HOH A 119 619 210 HOH HOH . 
H 6 HOH A 120 620 188 HOH HOH . 
H 6 HOH A 121 621 104 HOH HOH . 
H 6 HOH A 122 622 135 HOH HOH . 
H 6 HOH A 123 623 84 HOH HOH . 
H 6 HOH A 124 624 11 HOH HOH . 
H 6 HOH A 125 625 19 HOH HOH . 
H 6 HOH A 126 626 111 HOH HOH . 
H 6 HOH A 127 627 60 HOH HOH . 
H 6 HOH A 128 628 190 HOH HOH . 
H 6 HOH A 129 629 189 HOH HOH . 
H 6 HOH A 130 630 20 HOH HOH . 
H 6 HOH A 131 631 153 HOH HOH . 
H 6 HOH A 132 632 211 HOH HOH . 
H 6 HOH A 133 633 156 HOH HOH . 
H 6 HOH A 134 634 90 HOH HOH . 
H 6 HOH A 135 635 38 HOH HOH . 
H 6 HOH A 136 636 37 HOH HOH . 
H 6 HOH A 137 637 88 HOH HOH . 
H 6 HOH A 138 638 29 HOH HOH . 
H 6 HOH A 139 639 12 HOH HOH . 
H 6 HOH A 140 640 141 HOH HOH . 
H 6 HOH A 141 641 195 HOH HOH . 
H 6 HOH A 142 642 64 HOH HOH . 
H 6 HOH A 143 643 25 HOH HOH . 
H 6 HOH A 144 644 1 HOH HOH . 
H 6 HOH A 145 645 54 HOH HOH . 
H 6 HOH A 146 646 24 HOH HOH . 
H 6 HOH A 147 647 154 HOH HOH . 
H 6 HOH A 148 648 13 HOH HOH . 
H 6 HOH A 149 649 69 HOH HOH . 
H 6 HOH A 150 650 183 HOH HOH . 
H 6 HOH A 151 651 93 HOH HOH . 
H 6 HOH A 152 652 228 HOH HOH . 
H 6 HOH A 153 653 8 HOH HOH . 
H 6 HOH A 154 654 233 HOH HOH . 
H 6 HOH A 155 655 213 HOH HOH . 
H 6 HOH A 156 656 71 HOH HOH . 
H 6 HOH A 157 657 41 HOH HOH . 
H 6 HOH A 158 658 118 HOH HOH . 
H 6 HOH A 159 659 62 HOH HOH . 
H 6 HOH A 160 660 112 HOH HOH . 
H 6 HOH A 161 661 140 HOH HOH . 
H 6 HOH A 162 662 160 HOH HOH . 
H 6 HOH A 163 663 125 HOH HOH . 
H 6 HOH A 164 664 212 HOH HOH . 
H 6 HOH A 165 665 32 HOH HOH . 
H 6 HOH A 166 666 209 HOH HOH . 
H 6 HOH A 167 667 103 HOH HOH . 
H 6 HOH A 168 668 105 HOH HOH . 
H 6 HOH A 169 669 114 HOH HOH . 
H 6 HOH A 170 670 123 HOH HOH . 
H 6 HOH A 171 671 74 HOH HOH . 
H 6 HOH A 172 672 44 HOH HOH . 
H 6 HOH A 173 673 30 HOH HOH . 
H 6 HOH A 174 674 159 HOH HOH . 
H 6 HOH A 175 675 26 HOH HOH . 
H 6 HOH A 176 676 131 HOH HOH . 
H 6 HOH A 177 677 56 HOH HOH . 
H 6 HOH A 178 678 217 HOH HOH . 
H 6 HOH A 179 679 15 HOH HOH . 
H 6 HOH A 180 680 39 HOH HOH . 
H 6 HOH A 181 681 113 HOH HOH . 
H 6 HOH A 182 682 143 HOH HOH . 
H 6 HOH A 183 683 33 HOH HOH . 
H 6 HOH A 184 684 75 HOH HOH . 
H 6 HOH A 185 685 68 HOH HOH . 
H 6 HOH A 186 686 52 HOH HOH . 
H 6 HOH A 187 687 145 HOH HOH . 
H 6 HOH A 188 688 61 HOH HOH . 
H 6 HOH A 189 689 200 HOH HOH . 
H 6 HOH A 190 690 146 HOH HOH . 
H 6 HOH A 191 691 178 HOH HOH . 
H 6 HOH A 192 692 94 HOH HOH . 
H 6 HOH A 193 693 83 HOH HOH . 
H 6 HOH A 194 694 222 HOH HOH . 
H 6 HOH A 195 695 102 HOH HOH . 
H 6 HOH A 196 696 180 HOH HOH . 
H 6 HOH A 197 697 219 HOH HOH . 
H 6 HOH A 198 698 207 HOH HOH . 
H 6 HOH A 199 699 223 HOH HOH . 
H 6 HOH A 200 700 108 HOH HOH . 
H 6 HOH A 201 701 91 HOH HOH . 
H 6 HOH A 202 702 166 HOH HOH . 
H 6 HOH A 203 703 167 HOH HOH . 
H 6 HOH A 204 704 142 HOH HOH . 
H 6 HOH A 205 705 232 HOH HOH . 
H 6 HOH A 206 706 97 HOH HOH . 
H 6 HOH A 207 707 40 HOH HOH . 
H 6 HOH A 208 708 157 HOH HOH . 
H 6 HOH A 209 709 234 HOH HOH . 
H 6 HOH A 210 710 175 HOH HOH . 
H 6 HOH A 211 711 237 HOH HOH . 
H 6 HOH A 212 712 155 HOH HOH . 
H 6 HOH A 213 713 107 HOH HOH . 
H 6 HOH A 214 714 174 HOH HOH . 
H 6 HOH A 215 715 227 HOH HOH . 
H 6 HOH A 216 716 70 HOH HOH . 
H 6 HOH A 217 717 119 HOH HOH . 
H 6 HOH A 218 718 181 HOH HOH . 
H 6 HOH A 219 719 115 HOH HOH . 
H 6 HOH A 220 720 79 HOH HOH . 
H 6 HOH A 221 721 177 HOH HOH . 
H 6 HOH A 222 722 197 HOH HOH . 
H 6 HOH A 223 723 138 HOH HOH . 
H 6 HOH A 224 724 224 HOH HOH . 
H 6 HOH A 225 725 132 HOH HOH . 
H 6 HOH A 226 726 128 HOH HOH . 
H 6 HOH A 227 727 161 HOH HOH . 
H 6 HOH A 228 728 198 HOH HOH . 
H 6 HOH A 229 729 117 HOH HOH . 
H 6 HOH A 230 730 225 HOH HOH . 
H 6 HOH A 231 731 172 HOH HOH . 
H 6 HOH A 232 732 34 HOH HOH . 
H 6 HOH A 233 733 101 HOH HOH . 
H 6 HOH A 234 734 162 HOH HOH . 
H 6 HOH A 235 735 206 HOH HOH . 
H 6 HOH A 236 736 235 HOH HOH . 
H 6 HOH A 237 737 221 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -27.232 -25.351 27.395 1 45.18 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . C 3 -27.359 -23.956 27.113 1 45.36 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . C 3 -28.628 -25.949 27.472 1 45.76 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . C 3 -29.392 -25.458 26.367 1 47.09 ? O2 EDO 402 A 1 
HETATM 5 H H11 EDO . . . C 3 -26.71 -25.494 28.344 1 54.21 ? H11 EDO 402 A 1 
HETATM 6 H H12 EDO . . . C 3 -26.657 -25.841 26.607 1 54.21 ? H12 EDO 402 A 1 
HETATM 7 H HO1 EDO . . . C 3 -26.48 -23.556 27.06 1 54.43 ? HO1 EDO 402 A 1 
HETATM 8 H H21 EDO . . . C 3 -28.57 -27.039 27.431 1 54.91 ? H21 EDO 402 A 1 
HETATM 9 H H22 EDO . . . C 3 -29.105 -25.664 28.412 1 54.91 ? H22 EDO 402 A 1 
HETATM 10 H HO2 EDO . . . C 3 -30.284 -25.829 26.401 1 56.5 ? HO2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           375 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#