data_5VCZ # _model_server_result.job_id ZpcDwVUWQoujvQHLHzTmEw _model_server_result.datetime_utc '2024-11-17 08:15:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5VCZ # _exptl.entry_id 5VCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VCZ _cell.length_a 46.63 _cell.length_b 54.97 _cell.length_c 113.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 246 n n C1 C2 PEG sing 247 n n C1 H11 PEG sing 248 n n C1 H12 PEG sing 249 n n O1 HO1 PEG sing 250 n n C2 O2 PEG sing 251 n n C2 H21 PEG sing 252 n n C2 H22 PEG sing 253 n n O2 C3 PEG sing 254 n n C3 C4 PEG sing 255 n n C3 H31 PEG sing 256 n n C3 H32 PEG sing 257 n n C4 O4 PEG sing 258 n n C4 H41 PEG sing 259 n n C4 H42 PEG sing 260 n n O4 HO4 PEG sing 261 n n # _atom_sites.entry_id 5VCZ _atom_sites.fract_transf_matrix[1][1] 0.021445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XZN A 1 401 1 XZN XZN . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 403 2 EDO EDO . E 3 EDO A 1 404 3 EDO EDO . F 3 EDO A 1 405 4 EDO EDO . G 3 EDO A 1 406 5 EDO EDO . H 4 PEG A 1 407 1 PEG PEG . I 5 HOH A 1 501 100 HOH HOH . I 5 HOH A 2 502 212 HOH HOH . I 5 HOH A 3 503 149 HOH HOH . I 5 HOH A 4 504 124 HOH HOH . I 5 HOH A 5 505 102 HOH HOH . I 5 HOH A 6 506 237 HOH HOH . I 5 HOH A 7 507 78 HOH HOH . I 5 HOH A 8 508 76 HOH HOH . I 5 HOH A 9 509 119 HOH HOH . I 5 HOH A 10 510 234 HOH HOH . I 5 HOH A 11 511 235 HOH HOH . I 5 HOH A 12 512 173 HOH HOH . I 5 HOH A 13 513 230 HOH HOH . I 5 HOH A 14 514 223 HOH HOH . I 5 HOH A 15 515 161 HOH HOH . I 5 HOH A 16 516 144 HOH HOH . I 5 HOH A 17 517 178 HOH HOH . I 5 HOH A 18 518 182 HOH HOH . I 5 HOH A 19 519 77 HOH HOH . I 5 HOH A 20 520 92 HOH HOH . I 5 HOH A 21 521 35 HOH HOH . I 5 HOH A 22 522 133 HOH HOH . I 5 HOH A 23 523 162 HOH HOH . I 5 HOH A 24 524 61 HOH HOH . I 5 HOH A 25 525 29 HOH HOH . I 5 HOH A 26 526 95 HOH HOH . I 5 HOH A 27 527 69 HOH HOH . I 5 HOH A 28 528 104 HOH HOH . I 5 HOH A 29 529 85 HOH HOH . I 5 HOH A 30 530 36 HOH HOH . I 5 HOH A 31 531 215 HOH HOH . I 5 HOH A 32 532 199 HOH HOH . I 5 HOH A 33 533 208 HOH HOH . I 5 HOH A 34 534 93 HOH HOH . I 5 HOH A 35 535 113 HOH HOH . I 5 HOH A 36 536 145 HOH HOH . I 5 HOH A 37 537 105 HOH HOH . I 5 HOH A 38 538 239 HOH HOH . I 5 HOH A 39 539 28 HOH HOH . I 5 HOH A 40 540 3 HOH HOH . I 5 HOH A 41 541 206 HOH HOH . I 5 HOH A 42 542 30 HOH HOH . I 5 HOH A 43 543 192 HOH HOH . I 5 HOH A 44 544 38 HOH HOH . I 5 HOH A 45 545 2 HOH HOH . I 5 HOH A 46 546 54 HOH HOH . I 5 HOH A 47 547 107 HOH HOH . I 5 HOH A 48 548 108 HOH HOH . I 5 HOH A 49 549 27 HOH HOH . I 5 HOH A 50 550 55 HOH HOH . I 5 HOH A 51 551 42 HOH HOH . I 5 HOH A 52 552 62 HOH HOH . I 5 HOH A 53 553 75 HOH HOH . I 5 HOH A 54 554 15 HOH HOH . I 5 HOH A 55 555 94 HOH HOH . I 5 HOH A 56 556 170 HOH HOH . I 5 HOH A 57 557 10 HOH HOH . I 5 HOH A 58 558 125 HOH HOH . I 5 HOH A 59 559 60 HOH HOH . I 5 HOH A 60 560 26 HOH HOH . I 5 HOH A 61 561 227 HOH HOH . I 5 HOH A 62 562 4 HOH HOH . I 5 HOH A 63 563 58 HOH HOH . I 5 HOH A 64 564 172 HOH HOH . I 5 HOH A 65 565 160 HOH HOH . I 5 HOH A 66 566 219 HOH HOH . I 5 HOH A 67 567 73 HOH HOH . I 5 HOH A 68 568 196 HOH HOH . I 5 HOH A 69 569 56 HOH HOH . I 5 HOH A 70 570 68 HOH HOH . I 5 HOH A 71 571 148 HOH HOH . I 5 HOH A 72 572 191 HOH HOH . I 5 HOH A 73 573 218 HOH HOH . I 5 HOH A 74 574 135 HOH HOH . I 5 HOH A 75 575 11 HOH HOH . I 5 HOH A 76 576 97 HOH HOH . I 5 HOH A 77 577 156 HOH HOH . I 5 HOH A 78 578 41 HOH HOH . I 5 HOH A 79 579 8 HOH HOH . I 5 HOH A 80 580 139 HOH HOH . I 5 HOH A 81 581 74 HOH HOH . I 5 HOH A 82 582 210 HOH HOH . I 5 HOH A 83 583 159 HOH HOH . I 5 HOH A 84 584 88 HOH HOH . I 5 HOH A 85 585 31 HOH HOH . I 5 HOH A 86 586 33 HOH HOH . I 5 HOH A 87 587 21 HOH HOH . I 5 HOH A 88 588 7 HOH HOH . I 5 HOH A 89 589 84 HOH HOH . I 5 HOH A 90 590 123 HOH HOH . I 5 HOH A 91 591 80 HOH HOH . I 5 HOH A 92 592 183 HOH HOH . I 5 HOH A 93 593 114 HOH HOH . I 5 HOH A 94 594 40 HOH HOH . I 5 HOH A 95 595 32 HOH HOH . I 5 HOH A 96 596 177 HOH HOH . I 5 HOH A 97 597 23 HOH HOH . I 5 HOH A 98 598 5 HOH HOH . I 5 HOH A 99 599 211 HOH HOH . I 5 HOH A 100 600 214 HOH HOH . I 5 HOH A 101 601 63 HOH HOH . I 5 HOH A 102 602 51 HOH HOH . I 5 HOH A 103 603 45 HOH HOH . I 5 HOH A 104 604 43 HOH HOH . I 5 HOH A 105 605 19 HOH HOH . I 5 HOH A 106 606 98 HOH HOH . I 5 HOH A 107 607 131 HOH HOH . I 5 HOH A 108 608 13 HOH HOH . I 5 HOH A 109 609 81 HOH HOH . I 5 HOH A 110 610 152 HOH HOH . I 5 HOH A 111 611 9 HOH HOH . I 5 HOH A 112 612 46 HOH HOH . I 5 HOH A 113 613 122 HOH HOH . I 5 HOH A 114 614 180 HOH HOH . I 5 HOH A 115 615 22 HOH HOH . I 5 HOH A 116 616 129 HOH HOH . I 5 HOH A 117 617 86 HOH HOH . I 5 HOH A 118 618 16 HOH HOH . I 5 HOH A 119 619 44 HOH HOH . I 5 HOH A 120 620 118 HOH HOH . I 5 HOH A 121 621 79 HOH HOH . I 5 HOH A 122 622 117 HOH HOH . I 5 HOH A 123 623 66 HOH HOH . I 5 HOH A 124 624 87 HOH HOH . I 5 HOH A 125 625 14 HOH HOH . I 5 HOH A 126 626 190 HOH HOH . I 5 HOH A 127 627 17 HOH HOH . I 5 HOH A 128 628 205 HOH HOH . I 5 HOH A 129 629 141 HOH HOH . I 5 HOH A 130 630 89 HOH HOH . I 5 HOH A 131 631 185 HOH HOH . I 5 HOH A 132 632 142 HOH HOH . I 5 HOH A 133 633 165 HOH HOH . I 5 HOH A 134 634 48 HOH HOH . I 5 HOH A 135 635 90 HOH HOH . I 5 HOH A 136 636 6 HOH HOH . I 5 HOH A 137 637 96 HOH HOH . I 5 HOH A 138 638 12 HOH HOH . I 5 HOH A 139 639 176 HOH HOH . I 5 HOH A 140 640 150 HOH HOH . I 5 HOH A 141 641 241 HOH HOH . I 5 HOH A 142 642 39 HOH HOH . I 5 HOH A 143 643 140 HOH HOH . I 5 HOH A 144 644 127 HOH HOH . I 5 HOH A 145 645 115 HOH HOH . I 5 HOH A 146 646 91 HOH HOH . I 5 HOH A 147 647 106 HOH HOH . I 5 HOH A 148 648 166 HOH HOH . I 5 HOH A 149 649 217 HOH HOH . I 5 HOH A 150 650 1 HOH HOH . I 5 HOH A 151 651 47 HOH HOH . I 5 HOH A 152 652 132 HOH HOH . I 5 HOH A 153 653 153 HOH HOH . I 5 HOH A 154 654 50 HOH HOH . I 5 HOH A 155 655 224 HOH HOH . I 5 HOH A 156 656 111 HOH HOH . I 5 HOH A 157 657 49 HOH HOH . I 5 HOH A 158 658 169 HOH HOH . I 5 HOH A 159 659 59 HOH HOH . I 5 HOH A 160 660 213 HOH HOH . I 5 HOH A 161 661 126 HOH HOH . I 5 HOH A 162 662 52 HOH HOH . I 5 HOH A 163 663 203 HOH HOH . I 5 HOH A 164 664 83 HOH HOH . I 5 HOH A 165 665 72 HOH HOH . I 5 HOH A 166 666 231 HOH HOH . I 5 HOH A 167 667 222 HOH HOH . I 5 HOH A 168 668 67 HOH HOH . I 5 HOH A 169 669 143 HOH HOH . I 5 HOH A 170 670 232 HOH HOH . I 5 HOH A 171 671 64 HOH HOH . I 5 HOH A 172 672 57 HOH HOH . I 5 HOH A 173 673 220 HOH HOH . I 5 HOH A 174 674 138 HOH HOH . I 5 HOH A 175 675 25 HOH HOH . I 5 HOH A 176 676 216 HOH HOH . I 5 HOH A 177 677 34 HOH HOH . I 5 HOH A 178 678 238 HOH HOH . I 5 HOH A 179 679 53 HOH HOH . I 5 HOH A 180 680 101 HOH HOH . I 5 HOH A 181 681 233 HOH HOH . I 5 HOH A 182 682 20 HOH HOH . I 5 HOH A 183 683 188 HOH HOH . I 5 HOH A 184 684 197 HOH HOH . I 5 HOH A 185 685 82 HOH HOH . I 5 HOH A 186 686 99 HOH HOH . I 5 HOH A 187 687 18 HOH HOH . I 5 HOH A 188 688 151 HOH HOH . I 5 HOH A 189 689 226 HOH HOH . I 5 HOH A 190 690 155 HOH HOH . I 5 HOH A 191 691 146 HOH HOH . I 5 HOH A 192 692 204 HOH HOH . I 5 HOH A 193 693 228 HOH HOH . I 5 HOH A 194 694 147 HOH HOH . I 5 HOH A 195 695 186 HOH HOH . I 5 HOH A 196 696 134 HOH HOH . I 5 HOH A 197 697 202 HOH HOH . I 5 HOH A 198 698 158 HOH HOH . I 5 HOH A 199 699 163 HOH HOH . I 5 HOH A 200 700 37 HOH HOH . I 5 HOH A 201 701 209 HOH HOH . I 5 HOH A 202 702 24 HOH HOH . I 5 HOH A 203 703 221 HOH HOH . I 5 HOH A 204 704 112 HOH HOH . I 5 HOH A 205 705 168 HOH HOH . I 5 HOH A 206 706 174 HOH HOH . I 5 HOH A 207 707 198 HOH HOH . I 5 HOH A 208 708 187 HOH HOH . I 5 HOH A 209 709 240 HOH HOH . I 5 HOH A 210 710 65 HOH HOH . I 5 HOH A 211 711 167 HOH HOH . I 5 HOH A 212 712 236 HOH HOH . I 5 HOH A 213 713 116 HOH HOH . I 5 HOH A 214 714 110 HOH HOH . I 5 HOH A 215 715 171 HOH HOH . I 5 HOH A 216 716 189 HOH HOH . I 5 HOH A 217 717 184 HOH HOH . I 5 HOH A 218 718 70 HOH HOH . I 5 HOH A 219 719 130 HOH HOH . I 5 HOH A 220 720 71 HOH HOH . I 5 HOH A 221 721 109 HOH HOH . I 5 HOH A 222 722 154 HOH HOH . I 5 HOH A 223 723 136 HOH HOH . I 5 HOH A 224 724 200 HOH HOH . I 5 HOH A 225 725 229 HOH HOH . I 5 HOH A 226 726 175 HOH HOH . I 5 HOH A 227 727 179 HOH HOH . I 5 HOH A 228 728 181 HOH HOH . I 5 HOH A 229 729 195 HOH HOH . I 5 HOH A 230 730 164 HOH HOH . I 5 HOH A 231 731 194 HOH HOH . I 5 HOH A 232 732 201 HOH HOH . I 5 HOH A 233 733 128 HOH HOH . I 5 HOH A 234 734 121 HOH HOH . I 5 HOH A 235 735 193 HOH HOH . I 5 HOH A 236 736 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 4 11.831 -7.226 -14.574 1 30.37 ? C1 PEG 407 A 1 HETATM 2 O O1 PEG . . . H 4 11.79 -7.362 -15.918 1 31.3 ? O1 PEG 407 A 1 HETATM 3 C C2 PEG . . . H 4 13.061 -7.92 -14.172 1 29.24 ? C2 PEG 407 A 1 HETATM 4 O O2 PEG . . . H 4 12.923 -8.392 -12.828 1 27.72 ? O2 PEG 407 A 1 HETATM 5 C C3 PEG . . . H 4 13.888 -9.438 -12.488 1 26.27 ? C3 PEG 407 A 1 HETATM 6 C C4 PEG . . . H 4 13.375 -10.229 -11.339 1 24.98 ? C4 PEG 407 A 1 HETATM 7 O O4 PEG . . . H 4 13.255 -9.36 -10.225 1 23.91 ? O4 PEG 407 A 1 HETATM 8 H H11 PEG . . . H 4 11.044 -7.662 -14.167 1 36.44 ? H11 PEG 407 A 1 HETATM 9 H H12 PEG . . . H 4 11.872 -6.246 -14.311 1 36.44 ? H12 PEG 407 A 1 HETATM 10 H HO1 PEG . . . H 4 12.587 -7.352 -16.228 1 37.56 ? HO1 PEG 407 A 1 HETATM 11 H H21 PEG . . . H 4 13.21 -8.713 -14.787 1 35.09 ? H21 PEG 407 A 1 HETATM 12 H H22 PEG . . . H 4 13.854 -7.285 -14.237 1 35.09 ? H22 PEG 407 A 1 HETATM 13 H H31 PEG . . . H 4 14.032 -10.035 -13.264 1 31.52 ? H31 PEG 407 A 1 HETATM 14 H H32 PEG . . . H 4 14.767 -9.001 -12.228 1 31.52 ? H32 PEG 407 A 1 HETATM 15 H H41 PEG . . . H 4 14.014 -10.966 -11.124 1 29.97 ? H41 PEG 407 A 1 HETATM 16 H H42 PEG . . . H 4 12.486 -10.61 -11.564 1 29.97 ? H42 PEG 407 A 1 HETATM 17 H HO4 PEG . . . H 4 13.466 -9.812 -9.464 1 28.69 ? HO4 PEG 407 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #