data_5VD0 # _model_server_result.job_id Xbbe2IBP-gYLpf0D_USPHQ _model_server_result.datetime_utc '2024-11-13 05:08:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5VD0 # _exptl.entry_id 5VD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VD0 _cell.length_a 46.78 _cell.length_b 53.87 _cell.length_c 113.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 310 n n C1 C2 PEG sing 311 n n C1 H11 PEG sing 312 n n C1 H12 PEG sing 313 n n O1 HO1 PEG sing 314 n n C2 O2 PEG sing 315 n n C2 H21 PEG sing 316 n n C2 H22 PEG sing 317 n n O2 C3 PEG sing 318 n n C3 C4 PEG sing 319 n n C3 H31 PEG sing 320 n n C3 H32 PEG sing 321 n n C4 O4 PEG sing 322 n n C4 H41 PEG sing 323 n n C4 H42 PEG sing 324 n n O4 HO4 PEG sing 325 n n # _atom_sites.entry_id 5VD0 _atom_sites.fract_transf_matrix[1][1] 0.021377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8X7 A 1 401 1 8X7 MK1 . C 3 PEG A 1 402 1 PEG PEG . D 4 HOH A 1 501 42 HOH HOH . D 4 HOH A 2 502 1 HOH HOH . D 4 HOH A 3 503 19 HOH HOH . D 4 HOH A 4 504 45 HOH HOH . D 4 HOH A 5 505 40 HOH HOH . D 4 HOH A 6 506 11 HOH HOH . D 4 HOH A 7 507 43 HOH HOH . D 4 HOH A 8 508 31 HOH HOH . D 4 HOH A 9 509 28 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 66 HOH HOH . D 4 HOH A 12 512 22 HOH HOH . D 4 HOH A 13 513 57 HOH HOH . D 4 HOH A 14 514 15 HOH HOH . D 4 HOH A 15 515 36 HOH HOH . D 4 HOH A 16 516 49 HOH HOH . D 4 HOH A 17 517 44 HOH HOH . D 4 HOH A 18 518 61 HOH HOH . D 4 HOH A 19 519 17 HOH HOH . D 4 HOH A 20 520 5 HOH HOH . D 4 HOH A 21 521 20 HOH HOH . D 4 HOH A 22 522 58 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 18 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 68 HOH HOH . D 4 HOH A 27 527 65 HOH HOH . D 4 HOH A 28 528 13 HOH HOH . D 4 HOH A 29 529 9 HOH HOH . D 4 HOH A 30 530 53 HOH HOH . D 4 HOH A 31 531 6 HOH HOH . D 4 HOH A 32 532 33 HOH HOH . D 4 HOH A 33 533 3 HOH HOH . D 4 HOH A 34 534 63 HOH HOH . D 4 HOH A 35 535 54 HOH HOH . D 4 HOH A 36 536 23 HOH HOH . D 4 HOH A 37 537 52 HOH HOH . D 4 HOH A 38 538 21 HOH HOH . D 4 HOH A 39 539 50 HOH HOH . D 4 HOH A 40 540 47 HOH HOH . D 4 HOH A 41 541 25 HOH HOH . D 4 HOH A 42 542 7 HOH HOH . D 4 HOH A 43 543 41 HOH HOH . D 4 HOH A 44 544 56 HOH HOH . D 4 HOH A 45 545 64 HOH HOH . D 4 HOH A 46 546 32 HOH HOH . D 4 HOH A 47 547 39 HOH HOH . D 4 HOH A 48 548 38 HOH HOH . D 4 HOH A 49 549 14 HOH HOH . D 4 HOH A 50 550 67 HOH HOH . D 4 HOH A 51 551 12 HOH HOH . D 4 HOH A 52 552 35 HOH HOH . D 4 HOH A 53 553 16 HOH HOH . D 4 HOH A 54 554 34 HOH HOH . D 4 HOH A 55 555 2 HOH HOH . D 4 HOH A 56 556 55 HOH HOH . D 4 HOH A 57 557 51 HOH HOH . D 4 HOH A 58 558 48 HOH HOH . D 4 HOH A 59 559 46 HOH HOH . D 4 HOH A 60 560 37 HOH HOH . D 4 HOH A 61 561 59 HOH HOH . D 4 HOH A 62 562 29 HOH HOH . D 4 HOH A 63 563 4 HOH HOH . D 4 HOH A 64 564 60 HOH HOH . D 4 HOH A 65 565 30 HOH HOH . D 4 HOH A 66 566 8 HOH HOH . D 4 HOH A 67 567 24 HOH HOH . D 4 HOH A 68 568 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 -11.468 7.537 14.788 1 43.48 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . C 3 -12.238 8.548 15.256 1 44.17 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . C 3 -10.246 8.119 14.155 1 42.7 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . C 3 -10.632 8.964 13.084 1 41.85 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . C 3 -9.553 9.77 12.557 1 41.35 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . C 3 -10.001 10.46 11.29 1 41.53 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . C 3 -10.074 9.518 10.248 1 41.56 ? O4 PEG 402 A 1 HETATM 8 H H11 PEG . . . C 3 -11.207 6.942 15.532 1 52.18 ? H11 PEG 402 A 1 HETATM 9 H H12 PEG . . . C 3 -11.988 7.008 14.096 1 52.18 ? H12 PEG 402 A 1 HETATM 10 H HO1 PEG . . . C 3 -11.861 9.295 15.08 1 53 ? HO1 PEG 402 A 1 HETATM 11 H H21 PEG . . . C 3 -9.735 8.661 14.843 1 51.24 ? H21 PEG 402 A 1 HETATM 12 H H22 PEG . . . C 3 -9.653 7.371 13.802 1 51.24 ? H22 PEG 402 A 1 HETATM 13 H H31 PEG . . . C 3 -9.265 10.441 13.225 1 49.62 ? H31 PEG 402 A 1 HETATM 14 H H32 PEG . . . C 3 -8.774 9.157 12.336 1 49.62 ? H32 PEG 402 A 1 HETATM 15 H H41 PEG . . . C 3 -10.899 10.874 11.433 1 49.83 ? H41 PEG 402 A 1 HETATM 16 H H42 PEG . . . C 3 -9.345 11.166 11.05 1 49.83 ? H42 PEG 402 A 1 HETATM 17 H HO4 PEG . . . C 3 -10.787 9.709 9.717 1 49.87 ? HO4 PEG 402 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #