data_5VD1 # _model_server_result.job_id zAPntGYSSnDCqzo705csLQ _model_server_result.datetime_utc '2024-10-18 16:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5VD1 # _exptl.entry_id 5VD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VD1 _cell.length_a 46.55 _cell.length_b 55.39 _cell.length_c 113.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 307 n n C1 C2 PEG sing 308 n n C1 H11 PEG sing 309 n n C1 H12 PEG sing 310 n n O1 HO1 PEG sing 311 n n C2 O2 PEG sing 312 n n C2 H21 PEG sing 313 n n C2 H22 PEG sing 314 n n O2 C3 PEG sing 315 n n C3 C4 PEG sing 316 n n C3 H31 PEG sing 317 n n C3 H32 PEG sing 318 n n C4 O4 PEG sing 319 n n C4 H41 PEG sing 320 n n C4 H42 PEG sing 321 n n O4 HO4 PEG sing 322 n n # _atom_sites.entry_id 5VD1 _atom_sites.fract_transf_matrix[1][1] 0.021482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P48 A 1 401 1 P48 P48 . C 3 PEG A 1 402 1 PEG PEG . D 4 HOH A 1 501 99 HOH HOH . D 4 HOH A 2 502 178 HOH HOH . D 4 HOH A 3 503 92 HOH HOH . D 4 HOH A 4 504 161 HOH HOH . D 4 HOH A 5 505 136 HOH HOH . D 4 HOH A 6 506 83 HOH HOH . D 4 HOH A 7 507 105 HOH HOH . D 4 HOH A 8 508 196 HOH HOH . D 4 HOH A 9 509 28 HOH HOH . D 4 HOH A 10 510 49 HOH HOH . D 4 HOH A 11 511 145 HOH HOH . D 4 HOH A 12 512 37 HOH HOH . D 4 HOH A 13 513 88 HOH HOH . D 4 HOH A 14 514 155 HOH HOH . D 4 HOH A 15 515 56 HOH HOH . D 4 HOH A 16 516 106 HOH HOH . D 4 HOH A 17 517 54 HOH HOH . D 4 HOH A 18 518 192 HOH HOH . D 4 HOH A 19 519 159 HOH HOH . D 4 HOH A 20 520 115 HOH HOH . D 4 HOH A 21 521 52 HOH HOH . D 4 HOH A 22 522 10 HOH HOH . D 4 HOH A 23 523 84 HOH HOH . D 4 HOH A 24 524 126 HOH HOH . D 4 HOH A 25 525 44 HOH HOH . D 4 HOH A 26 526 112 HOH HOH . D 4 HOH A 27 527 51 HOH HOH . D 4 HOH A 28 528 168 HOH HOH . D 4 HOH A 29 529 144 HOH HOH . D 4 HOH A 30 530 87 HOH HOH . D 4 HOH A 31 531 79 HOH HOH . D 4 HOH A 32 532 114 HOH HOH . D 4 HOH A 33 533 149 HOH HOH . D 4 HOH A 34 534 11 HOH HOH . D 4 HOH A 35 535 26 HOH HOH . D 4 HOH A 36 536 1 HOH HOH . D 4 HOH A 37 537 29 HOH HOH . D 4 HOH A 38 538 13 HOH HOH . D 4 HOH A 39 539 68 HOH HOH . D 4 HOH A 40 540 187 HOH HOH . D 4 HOH A 41 541 14 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 175 HOH HOH . D 4 HOH A 44 544 109 HOH HOH . D 4 HOH A 45 545 170 HOH HOH . D 4 HOH A 46 546 139 HOH HOH . D 4 HOH A 47 547 86 HOH HOH . D 4 HOH A 48 548 30 HOH HOH . D 4 HOH A 49 549 70 HOH HOH . D 4 HOH A 50 550 108 HOH HOH . D 4 HOH A 51 551 6 HOH HOH . D 4 HOH A 52 552 98 HOH HOH . D 4 HOH A 53 553 5 HOH HOH . D 4 HOH A 54 554 121 HOH HOH . D 4 HOH A 55 555 78 HOH HOH . D 4 HOH A 56 556 129 HOH HOH . D 4 HOH A 57 557 80 HOH HOH . D 4 HOH A 58 558 102 HOH HOH . D 4 HOH A 59 559 117 HOH HOH . D 4 HOH A 60 560 34 HOH HOH . D 4 HOH A 61 561 4 HOH HOH . D 4 HOH A 62 562 123 HOH HOH . D 4 HOH A 63 563 177 HOH HOH . D 4 HOH A 64 564 23 HOH HOH . D 4 HOH A 65 565 156 HOH HOH . D 4 HOH A 66 566 20 HOH HOH . D 4 HOH A 67 567 72 HOH HOH . D 4 HOH A 68 568 171 HOH HOH . D 4 HOH A 69 569 107 HOH HOH . D 4 HOH A 70 570 58 HOH HOH . D 4 HOH A 71 571 174 HOH HOH . D 4 HOH A 72 572 64 HOH HOH . D 4 HOH A 73 573 183 HOH HOH . D 4 HOH A 74 574 41 HOH HOH . D 4 HOH A 75 575 19 HOH HOH . D 4 HOH A 76 576 148 HOH HOH . D 4 HOH A 77 577 131 HOH HOH . D 4 HOH A 78 578 45 HOH HOH . D 4 HOH A 79 579 22 HOH HOH . D 4 HOH A 80 580 48 HOH HOH . D 4 HOH A 81 581 16 HOH HOH . D 4 HOH A 82 582 71 HOH HOH . D 4 HOH A 83 583 100 HOH HOH . D 4 HOH A 84 584 81 HOH HOH . D 4 HOH A 85 585 138 HOH HOH . D 4 HOH A 86 586 97 HOH HOH . D 4 HOH A 87 587 9 HOH HOH . D 4 HOH A 88 588 50 HOH HOH . D 4 HOH A 89 589 7 HOH HOH . D 4 HOH A 90 590 43 HOH HOH . D 4 HOH A 91 591 3 HOH HOH . D 4 HOH A 92 592 32 HOH HOH . D 4 HOH A 93 593 151 HOH HOH . D 4 HOH A 94 594 33 HOH HOH . D 4 HOH A 95 595 122 HOH HOH . D 4 HOH A 96 596 21 HOH HOH . D 4 HOH A 97 597 77 HOH HOH . D 4 HOH A 98 598 18 HOH HOH . D 4 HOH A 99 599 85 HOH HOH . D 4 HOH A 100 600 90 HOH HOH . D 4 HOH A 101 601 15 HOH HOH . D 4 HOH A 102 602 201 HOH HOH . D 4 HOH A 103 603 194 HOH HOH . D 4 HOH A 104 604 166 HOH HOH . D 4 HOH A 105 605 75 HOH HOH . D 4 HOH A 106 606 110 HOH HOH . D 4 HOH A 107 607 118 HOH HOH . D 4 HOH A 108 608 120 HOH HOH . D 4 HOH A 109 609 197 HOH HOH . D 4 HOH A 110 610 176 HOH HOH . D 4 HOH A 111 611 17 HOH HOH . D 4 HOH A 112 612 173 HOH HOH . D 4 HOH A 113 613 2 HOH HOH . D 4 HOH A 114 614 53 HOH HOH . D 4 HOH A 115 615 169 HOH HOH . D 4 HOH A 116 616 172 HOH HOH . D 4 HOH A 117 617 40 HOH HOH . D 4 HOH A 118 618 116 HOH HOH . D 4 HOH A 119 619 57 HOH HOH . D 4 HOH A 120 620 66 HOH HOH . D 4 HOH A 121 621 62 HOH HOH . D 4 HOH A 122 622 101 HOH HOH . D 4 HOH A 123 623 67 HOH HOH . D 4 HOH A 124 624 59 HOH HOH . D 4 HOH A 125 625 132 HOH HOH . D 4 HOH A 126 626 12 HOH HOH . D 4 HOH A 127 627 184 HOH HOH . D 4 HOH A 128 628 119 HOH HOH . D 4 HOH A 129 629 190 HOH HOH . D 4 HOH A 130 630 8 HOH HOH . D 4 HOH A 131 631 74 HOH HOH . D 4 HOH A 132 632 24 HOH HOH . D 4 HOH A 133 633 27 HOH HOH . D 4 HOH A 134 634 189 HOH HOH . D 4 HOH A 135 635 25 HOH HOH . D 4 HOH A 136 636 95 HOH HOH . D 4 HOH A 137 637 91 HOH HOH . D 4 HOH A 138 638 133 HOH HOH . D 4 HOH A 139 639 179 HOH HOH . D 4 HOH A 140 640 35 HOH HOH . D 4 HOH A 141 641 142 HOH HOH . D 4 HOH A 142 642 39 HOH HOH . D 4 HOH A 143 643 130 HOH HOH . D 4 HOH A 144 644 31 HOH HOH . D 4 HOH A 145 645 193 HOH HOH . D 4 HOH A 146 646 165 HOH HOH . D 4 HOH A 147 647 73 HOH HOH . D 4 HOH A 148 648 76 HOH HOH . D 4 HOH A 149 649 65 HOH HOH . D 4 HOH A 150 650 147 HOH HOH . D 4 HOH A 151 651 82 HOH HOH . D 4 HOH A 152 652 46 HOH HOH . D 4 HOH A 153 653 181 HOH HOH . D 4 HOH A 154 654 36 HOH HOH . D 4 HOH A 155 655 158 HOH HOH . D 4 HOH A 156 656 113 HOH HOH . D 4 HOH A 157 657 60 HOH HOH . D 4 HOH A 158 658 69 HOH HOH . D 4 HOH A 159 659 47 HOH HOH . D 4 HOH A 160 660 195 HOH HOH . D 4 HOH A 161 661 38 HOH HOH . D 4 HOH A 162 662 188 HOH HOH . D 4 HOH A 163 663 127 HOH HOH . D 4 HOH A 164 664 103 HOH HOH . D 4 HOH A 165 665 61 HOH HOH . D 4 HOH A 166 666 96 HOH HOH . D 4 HOH A 167 667 167 HOH HOH . D 4 HOH A 168 668 152 HOH HOH . D 4 HOH A 169 669 94 HOH HOH . D 4 HOH A 170 670 140 HOH HOH . D 4 HOH A 171 671 153 HOH HOH . D 4 HOH A 172 672 55 HOH HOH . D 4 HOH A 173 673 182 HOH HOH . D 4 HOH A 174 674 202 HOH HOH . D 4 HOH A 175 675 199 HOH HOH . D 4 HOH A 176 676 137 HOH HOH . D 4 HOH A 177 677 93 HOH HOH . D 4 HOH A 178 678 150 HOH HOH . D 4 HOH A 179 679 141 HOH HOH . D 4 HOH A 180 680 146 HOH HOH . D 4 HOH A 181 681 128 HOH HOH . D 4 HOH A 182 682 164 HOH HOH . D 4 HOH A 183 683 63 HOH HOH . D 4 HOH A 184 684 191 HOH HOH . D 4 HOH A 185 685 111 HOH HOH . D 4 HOH A 186 686 134 HOH HOH . D 4 HOH A 187 687 163 HOH HOH . D 4 HOH A 188 688 160 HOH HOH . D 4 HOH A 189 689 200 HOH HOH . D 4 HOH A 190 690 135 HOH HOH . D 4 HOH A 191 691 143 HOH HOH . D 4 HOH A 192 692 157 HOH HOH . D 4 HOH A 193 693 198 HOH HOH . D 4 HOH A 194 694 180 HOH HOH . D 4 HOH A 195 695 185 HOH HOH . D 4 HOH A 196 696 186 HOH HOH . D 4 HOH A 197 697 162 HOH HOH . D 4 HOH A 198 698 104 HOH HOH . D 4 HOH A 199 699 89 HOH HOH . D 4 HOH A 200 700 124 HOH HOH . D 4 HOH A 201 701 154 HOH HOH . D 4 HOH A 202 702 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 12.521 -6.687 -14.89 1 39.79 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . C 3 12.389 -6.679 -16.245 1 43.79 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . C 3 12.635 -8.118 -14.489 1 36.07 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . C 3 12.842 -8.249 -13.089 1 28.17 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . C 3 13.799 -9.283 -12.694 1 28.13 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . C 3 13.407 -9.979 -11.416 1 27.42 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . C 3 13.356 -9.025 -10.388 1 23.23 ? O4 PEG 402 A 1 HETATM 8 H H11 PEG . . . C 3 13.337 -6.194 -14.63 1 47.75 ? H11 PEG 402 A 1 HETATM 9 H H12 PEG . . . C 3 11.702 -6.268 -14.461 1 47.75 ? H12 PEG 402 A 1 HETATM 10 H HO1 PEG . . . C 3 11.782 -7.235 -16.474 1 52.54 ? HO1 PEG 402 A 1 HETATM 11 H H21 PEG . . . C 3 11.792 -8.616 -14.753 1 43.29 ? H21 PEG 402 A 1 HETATM 12 H H22 PEG . . . C 3 13.431 -8.525 -14.975 1 43.29 ? H22 PEG 402 A 1 HETATM 13 H H31 PEG . . . C 3 13.876 -9.956 -13.416 1 33.75 ? H31 PEG 402 A 1 HETATM 14 H H32 PEG . . . C 3 14.704 -8.842 -12.559 1 33.75 ? H32 PEG 402 A 1 HETATM 15 H H41 PEG . . . C 3 12.509 -10.402 -11.525 1 32.91 ? H41 PEG 402 A 1 HETATM 16 H H42 PEG . . . C 3 14.08 -10.674 -11.194 1 32.91 ? H42 PEG 402 A 1 HETATM 17 H HO4 PEG . . . C 3 13.382 -9.446 -9.583 1 27.88 ? HO4 PEG 402 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #