data_5VD2
#
_model_server_result.job_id            JJMSE7ZBuh9_Hi5Bp07rQw 
_model_server_result.datetime_utc      '2024-11-28 04:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vd2 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
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_entry.id    5VD2 
#
_exptl.entry_id    5VD2 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          102.52 
_cell.angle_gamma         90 
_cell.entry_id            5VD2 
_cell.length_a            50.52 
_cell.length_b            45.71 
_cell.length_c            59.44 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5VD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 323 n n 
P O2 PO4 sing 324 n n 
P O3 PO4 sing 325 n n 
P O4 PO4 sing 326 n n 
#
_atom_sites.entry_id                     5VD2 
_atom_sites.fract_transf_matrix[1][1]    0.019794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004394 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021877 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 34W A 1 601 1 34W 34W . 
C 3 PO4 A 1 602 1 PO4 PO4 . 
D 4 CL A 1 603 1 CL CL . 
E 4 CL A 1 604 2 CL CL . 
F 5 HOH A 1 701 41 HOH HOH . 
F 5 HOH A 2 702 26 HOH HOH . 
F 5 HOH A 3 703 38 HOH HOH . 
F 5 HOH A 4 704 33 HOH HOH . 
F 5 HOH A 5 705 5 HOH HOH . 
F 5 HOH A 6 706 18 HOH HOH . 
F 5 HOH A 7 707 39 HOH HOH . 
F 5 HOH A 8 708 13 HOH HOH . 
F 5 HOH A 9 709 8 HOH HOH . 
F 5 HOH A 10 710 9 HOH HOH . 
F 5 HOH A 11 711 7 HOH HOH . 
F 5 HOH A 12 712 32 HOH HOH . 
F 5 HOH A 13 713 23 HOH HOH . 
F 5 HOH A 14 714 44 HOH HOH . 
F 5 HOH A 15 715 12 HOH HOH . 
F 5 HOH A 16 716 19 HOH HOH . 
F 5 HOH A 17 717 25 HOH HOH . 
F 5 HOH A 18 718 43 HOH HOH . 
F 5 HOH A 19 719 15 HOH HOH . 
F 5 HOH A 20 720 1 HOH HOH . 
F 5 HOH A 21 721 11 HOH HOH . 
F 5 HOH A 22 722 4 HOH HOH . 
F 5 HOH A 23 723 34 HOH HOH . 
F 5 HOH A 24 724 3 HOH HOH . 
F 5 HOH A 25 725 17 HOH HOH . 
F 5 HOH A 26 726 21 HOH HOH . 
F 5 HOH A 27 727 6 HOH HOH . 
F 5 HOH A 28 728 10 HOH HOH . 
F 5 HOH A 29 729 2 HOH HOH . 
F 5 HOH A 30 730 16 HOH HOH . 
F 5 HOH A 31 731 45 HOH HOH . 
F 5 HOH A 32 732 27 HOH HOH . 
F 5 HOH A 33 733 31 HOH HOH . 
F 5 HOH A 34 734 49 HOH HOH . 
F 5 HOH A 35 735 35 HOH HOH . 
F 5 HOH A 36 736 20 HOH HOH . 
F 5 HOH A 37 737 14 HOH HOH . 
F 5 HOH A 38 738 22 HOH HOH . 
F 5 HOH A 39 739 37 HOH HOH . 
F 5 HOH A 40 740 29 HOH HOH . 
F 5 HOH A 41 741 28 HOH HOH . 
F 5 HOH A 42 742 36 HOH HOH . 
F 5 HOH A 43 743 42 HOH HOH . 
F 5 HOH A 44 744 47 HOH HOH . 
F 5 HOH A 45 745 30 HOH HOH . 
F 5 HOH A 46 746 24 HOH HOH . 
F 5 HOH A 47 747 40 HOH HOH . 
F 5 HOH A 48 748 48 HOH HOH . 
F 5 HOH A 49 749 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . C 3 21.687 7.501 30.681 1 63.78 ? P PO4 602 A 1 
HETATM 2 O O1 PO4 . . . C 3 20.953 8.589 29.935 1 64.08 ? O1 PO4 602 A 1 
HETATM 3 O O2 PO4 . . . C 3 21.995 7.967 32.084 1 61.92 ? O2 PO4 602 A 1 
HETATM 4 O O3 PO4 . . . C 3 22.972 7.18 29.96 1 65.08 ? O3 PO4 602 A 1 
HETATM 5 O O4 PO4 . . . C 3 20.826 6.261 30.751 1 67.12 ? O4 PO4 602 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#