data_5VD3
#
_model_server_result.job_id            D3l4GbLFj_aNQzafMRSfSg 
_model_server_result.datetime_utc      '2024-11-16 14:55:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5VD3 
#
_exptl.entry_id    5VD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VD3 
_cell.length_a            47.04 
_cell.length_b            54.06 
_cell.length_c            114.11 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5VD3 
_atom_sites.fract_transf_matrix[1][1]    0.021259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008763 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 H8H A 1 401 1 H8H H8H . 
C 3 EDO A 1 402 1 EDO EDO . 
D 3 EDO A 1 403 2 EDO EDO . 
E 4 PEG A 1 404 1 PEG PEG . 
F 5 HOH A 1 501 12 HOH HOH . 
F 5 HOH A 2 502 57 HOH HOH . 
F 5 HOH A 3 503 129 HOH HOH . 
F 5 HOH A 4 504 94 HOH HOH . 
F 5 HOH A 5 505 161 HOH HOH . 
F 5 HOH A 6 506 65 HOH HOH . 
F 5 HOH A 7 507 149 HOH HOH . 
F 5 HOH A 8 508 55 HOH HOH . 
F 5 HOH A 9 509 78 HOH HOH . 
F 5 HOH A 10 510 131 HOH HOH . 
F 5 HOH A 11 511 33 HOH HOH . 
F 5 HOH A 12 512 154 HOH HOH . 
F 5 HOH A 13 513 36 HOH HOH . 
F 5 HOH A 14 514 95 HOH HOH . 
F 5 HOH A 15 515 8 HOH HOH . 
F 5 HOH A 16 516 106 HOH HOH . 
F 5 HOH A 17 517 119 HOH HOH . 
F 5 HOH A 18 518 151 HOH HOH . 
F 5 HOH A 19 519 56 HOH HOH . 
F 5 HOH A 20 520 21 HOH HOH . 
F 5 HOH A 21 521 22 HOH HOH . 
F 5 HOH A 22 522 162 HOH HOH . 
F 5 HOH A 23 523 64 HOH HOH . 
F 5 HOH A 24 524 100 HOH HOH . 
F 5 HOH A 25 525 150 HOH HOH . 
F 5 HOH A 26 526 143 HOH HOH . 
F 5 HOH A 27 527 141 HOH HOH . 
F 5 HOH A 28 528 40 HOH HOH . 
F 5 HOH A 29 529 125 HOH HOH . 
F 5 HOH A 30 530 13 HOH HOH . 
F 5 HOH A 31 531 35 HOH HOH . 
F 5 HOH A 32 532 85 HOH HOH . 
F 5 HOH A 33 533 75 HOH HOH . 
F 5 HOH A 34 534 69 HOH HOH . 
F 5 HOH A 35 535 101 HOH HOH . 
F 5 HOH A 36 536 111 HOH HOH . 
F 5 HOH A 37 537 47 HOH HOH . 
F 5 HOH A 38 538 72 HOH HOH . 
F 5 HOH A 39 539 74 HOH HOH . 
F 5 HOH A 40 540 71 HOH HOH . 
F 5 HOH A 41 541 152 HOH HOH . 
F 5 HOH A 42 542 3 HOH HOH . 
F 5 HOH A 43 543 67 HOH HOH . 
F 5 HOH A 44 544 107 HOH HOH . 
F 5 HOH A 45 545 60 HOH HOH . 
F 5 HOH A 46 546 118 HOH HOH . 
F 5 HOH A 47 547 4 HOH HOH . 
F 5 HOH A 48 548 99 HOH HOH . 
F 5 HOH A 49 549 14 HOH HOH . 
F 5 HOH A 50 550 23 HOH HOH . 
F 5 HOH A 51 551 79 HOH HOH . 
F 5 HOH A 52 552 42 HOH HOH . 
F 5 HOH A 53 553 104 HOH HOH . 
F 5 HOH A 54 554 76 HOH HOH . 
F 5 HOH A 55 555 89 HOH HOH . 
F 5 HOH A 56 556 147 HOH HOH . 
F 5 HOH A 57 557 10 HOH HOH . 
F 5 HOH A 58 558 53 HOH HOH . 
F 5 HOH A 59 559 34 HOH HOH . 
F 5 HOH A 60 560 160 HOH HOH . 
F 5 HOH A 61 561 77 HOH HOH . 
F 5 HOH A 62 562 134 HOH HOH . 
F 5 HOH A 63 563 158 HOH HOH . 
F 5 HOH A 64 564 116 HOH HOH . 
F 5 HOH A 65 565 138 HOH HOH . 
F 5 HOH A 66 566 86 HOH HOH . 
F 5 HOH A 67 567 87 HOH HOH . 
F 5 HOH A 68 568 83 HOH HOH . 
F 5 HOH A 69 569 18 HOH HOH . 
F 5 HOH A 70 570 39 HOH HOH . 
F 5 HOH A 71 571 155 HOH HOH . 
F 5 HOH A 72 572 109 HOH HOH . 
F 5 HOH A 73 573 54 HOH HOH . 
F 5 HOH A 74 574 43 HOH HOH . 
F 5 HOH A 75 575 26 HOH HOH . 
F 5 HOH A 76 576 68 HOH HOH . 
F 5 HOH A 77 577 37 HOH HOH . 
F 5 HOH A 78 578 132 HOH HOH . 
F 5 HOH A 79 579 30 HOH HOH . 
F 5 HOH A 80 580 17 HOH HOH . 
F 5 HOH A 81 581 164 HOH HOH . 
F 5 HOH A 82 582 127 HOH HOH . 
F 5 HOH A 83 583 91 HOH HOH . 
F 5 HOH A 84 584 114 HOH HOH . 
F 5 HOH A 85 585 130 HOH HOH . 
F 5 HOH A 86 586 27 HOH HOH . 
F 5 HOH A 87 587 11 HOH HOH . 
F 5 HOH A 88 588 144 HOH HOH . 
F 5 HOH A 89 589 139 HOH HOH . 
F 5 HOH A 90 590 5 HOH HOH . 
F 5 HOH A 91 591 50 HOH HOH . 
F 5 HOH A 92 592 121 HOH HOH . 
F 5 HOH A 93 593 105 HOH HOH . 
F 5 HOH A 94 594 146 HOH HOH . 
F 5 HOH A 95 595 66 HOH HOH . 
F 5 HOH A 96 596 163 HOH HOH . 
F 5 HOH A 97 597 63 HOH HOH . 
F 5 HOH A 98 598 2 HOH HOH . 
F 5 HOH A 99 599 153 HOH HOH . 
F 5 HOH A 100 600 112 HOH HOH . 
F 5 HOH A 101 601 103 HOH HOH . 
F 5 HOH A 102 602 45 HOH HOH . 
F 5 HOH A 103 603 62 HOH HOH . 
F 5 HOH A 104 604 25 HOH HOH . 
F 5 HOH A 105 605 157 HOH HOH . 
F 5 HOH A 106 606 1 HOH HOH . 
F 5 HOH A 107 607 7 HOH HOH . 
F 5 HOH A 108 608 16 HOH HOH . 
F 5 HOH A 109 609 24 HOH HOH . 
F 5 HOH A 110 610 108 HOH HOH . 
F 5 HOH A 111 611 48 HOH HOH . 
F 5 HOH A 112 612 102 HOH HOH . 
F 5 HOH A 113 613 115 HOH HOH . 
F 5 HOH A 114 614 15 HOH HOH . 
F 5 HOH A 115 615 51 HOH HOH . 
F 5 HOH A 116 616 159 HOH HOH . 
F 5 HOH A 117 617 6 HOH HOH . 
F 5 HOH A 118 618 122 HOH HOH . 
F 5 HOH A 119 619 73 HOH HOH . 
F 5 HOH A 120 620 52 HOH HOH . 
F 5 HOH A 121 621 98 HOH HOH . 
F 5 HOH A 122 622 29 HOH HOH . 
F 5 HOH A 123 623 46 HOH HOH . 
F 5 HOH A 124 624 80 HOH HOH . 
F 5 HOH A 125 625 81 HOH HOH . 
F 5 HOH A 126 626 38 HOH HOH . 
F 5 HOH A 127 627 20 HOH HOH . 
F 5 HOH A 128 628 92 HOH HOH . 
F 5 HOH A 129 629 90 HOH HOH . 
F 5 HOH A 130 630 49 HOH HOH . 
F 5 HOH A 131 631 97 HOH HOH . 
F 5 HOH A 132 632 128 HOH HOH . 
F 5 HOH A 133 633 31 HOH HOH . 
F 5 HOH A 134 634 142 HOH HOH . 
F 5 HOH A 135 635 84 HOH HOH . 
F 5 HOH A 136 636 9 HOH HOH . 
F 5 HOH A 137 637 82 HOH HOH . 
F 5 HOH A 138 638 148 HOH HOH . 
F 5 HOH A 139 639 70 HOH HOH . 
F 5 HOH A 140 640 44 HOH HOH . 
F 5 HOH A 141 641 140 HOH HOH . 
F 5 HOH A 142 642 19 HOH HOH . 
F 5 HOH A 143 643 165 HOH HOH . 
F 5 HOH A 144 644 28 HOH HOH . 
F 5 HOH A 145 645 88 HOH HOH . 
F 5 HOH A 146 646 32 HOH HOH . 
F 5 HOH A 147 647 61 HOH HOH . 
F 5 HOH A 148 648 117 HOH HOH . 
F 5 HOH A 149 649 113 HOH HOH . 
F 5 HOH A 150 650 126 HOH HOH . 
F 5 HOH A 151 651 156 HOH HOH . 
F 5 HOH A 152 652 145 HOH HOH . 
F 5 HOH A 153 653 41 HOH HOH . 
F 5 HOH A 154 654 58 HOH HOH . 
F 5 HOH A 155 655 123 HOH HOH . 
F 5 HOH A 156 656 93 HOH HOH . 
F 5 HOH A 157 657 96 HOH HOH . 
F 5 HOH A 158 658 120 HOH HOH . 
F 5 HOH A 159 659 59 HOH HOH . 
F 5 HOH A 160 660 124 HOH HOH . 
F 5 HOH A 161 661 110 HOH HOH . 
F 5 HOH A 162 662 166 HOH HOH . 
F 5 HOH A 163 663 137 HOH HOH . 
F 5 HOH A 164 664 136 HOH HOH . 
F 5 HOH A 165 665 133 HOH HOH . 
F 5 HOH A 166 666 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -10.137 -5.134 -24.731 1 58.66 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . C 3 -11.054 -5.099 -23.632 1 57.65 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . C 3 -10.87 -4.795 -26.025 1 60.14 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . C 3 -10.836 -3.38 -26.247 1 61.36 ? O2 EDO 402 A 1 
HETATM 5 H H11 EDO . . . C 3 -9.333 -4.413 -24.564 1 70.41 ? H11 EDO 402 A 1 
HETATM 6 H H12 EDO . . . C 3 -9.692 -6.128 -24.809 1 70.41 ? H12 EDO 402 A 1 
HETATM 7 H HO1 EDO . . . C 3 -10.585 -5.314 -22.814 1 69.2 ? HO1 EDO 402 A 1 
HETATM 8 H H21 EDO . . . C 3 -10.395 -5.311 -26.863 1 72.19 ? H21 EDO 402 A 1 
HETATM 9 H H22 EDO . . . C 3 -11.906 -5.133 -25.96 1 72.19 ? H22 EDO 402 A 1 
HETATM 10 H HO2 EDO . . . C 3 -11.302 -3.171 -27.068 1 73.65 ? HO2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#