data_5VD4 # _model_server_result.job_id jmMej2s1gXSZZR2tbIzpIg _model_server_result.datetime_utc '2024-11-21 11:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5VD4 # _exptl.entry_id 5VD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.04 _cell.angle_gamma 90 _cell.entry_id 5VD4 _cell.length_a 50.31 _cell.length_b 43.78 _cell.length_c 64.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 339 n n P O2 PO4 sing 340 n n P O3 PO4 sing 341 n n P O4 PO4 sing 342 n n # _atom_sites.entry_id 5VD4 _atom_sites.fract_transf_matrix[1][1] 0.019877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004605 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 99J A 1 601 1 99J LIG . C 3 PO4 A 1 602 1 PO4 PO4 . D 3 PO4 A 1 603 2 PO4 PO4 . E 4 EDO A 1 604 1 EDO EDO . F 4 EDO A 1 605 2 EDO EDO . G 4 EDO A 1 606 3 EDO EDO . H 5 CL A 1 607 1 CL CL . I 6 HOH A 1 701 28 HOH HOH . I 6 HOH A 2 702 51 HOH HOH . I 6 HOH A 3 703 5 HOH HOH . I 6 HOH A 4 704 15 HOH HOH . I 6 HOH A 5 705 21 HOH HOH . I 6 HOH A 6 706 43 HOH HOH . I 6 HOH A 7 707 17 HOH HOH . I 6 HOH A 8 708 9 HOH HOH . I 6 HOH A 9 709 1 HOH HOH . I 6 HOH A 10 710 23 HOH HOH . I 6 HOH A 11 711 4 HOH HOH . I 6 HOH A 12 712 18 HOH HOH . I 6 HOH A 13 713 6 HOH HOH . I 6 HOH A 14 714 49 HOH HOH . I 6 HOH A 15 715 39 HOH HOH . I 6 HOH A 16 716 8 HOH HOH . I 6 HOH A 17 717 22 HOH HOH . I 6 HOH A 18 718 45 HOH HOH . I 6 HOH A 19 719 29 HOH HOH . I 6 HOH A 20 720 2 HOH HOH . I 6 HOH A 21 721 31 HOH HOH . I 6 HOH A 22 722 10 HOH HOH . I 6 HOH A 23 723 3 HOH HOH . I 6 HOH A 24 724 52 HOH HOH . I 6 HOH A 25 725 13 HOH HOH . I 6 HOH A 26 726 26 HOH HOH . I 6 HOH A 27 727 44 HOH HOH . I 6 HOH A 28 728 48 HOH HOH . I 6 HOH A 29 729 30 HOH HOH . I 6 HOH A 30 730 32 HOH HOH . I 6 HOH A 31 731 7 HOH HOH . I 6 HOH A 32 732 14 HOH HOH . I 6 HOH A 33 733 25 HOH HOH . I 6 HOH A 34 734 12 HOH HOH . I 6 HOH A 35 735 46 HOH HOH . I 6 HOH A 36 736 24 HOH HOH . I 6 HOH A 37 737 11 HOH HOH . I 6 HOH A 38 738 36 HOH HOH . I 6 HOH A 39 739 16 HOH HOH . I 6 HOH A 40 740 40 HOH HOH . I 6 HOH A 41 741 47 HOH HOH . I 6 HOH A 42 742 34 HOH HOH . I 6 HOH A 43 743 38 HOH HOH . I 6 HOH A 44 744 27 HOH HOH . I 6 HOH A 45 745 50 HOH HOH . I 6 HOH A 46 746 41 HOH HOH . I 6 HOH A 47 747 19 HOH HOH . I 6 HOH A 48 748 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 20.462 6.273 31.94 1 41.17 ? P PO4 602 A 1 HETATM 2 O O1 PO4 . . . C 3 19.875 7.286 30.985 1 39.76 ? O1 PO4 602 A 1 HETATM 3 O O2 PO4 . . . C 3 20.623 6.899 33.306 1 40.09 ? O2 PO4 602 A 1 HETATM 4 O O3 PO4 . . . C 3 21.817 5.84 31.435 1 67.1 ? O3 PO4 602 A 1 HETATM 5 O O4 PO4 . . . C 3 19.555 5.068 32.04 1 38.31 ? O4 PO4 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #