data_5VD7
#
_model_server_result.job_id            OUhKKASEIKNslnY8Au5bng 
_model_server_result.datetime_utc      '2025-01-11 11:43:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vd7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    5VD7 
#
_exptl.entry_id    5VD7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.05 
_cell.angle_gamma         90 
_cell.entry_id            5VD7 
_cell.length_a            50.19 
_cell.length_b            44.55 
_cell.length_c            64.64 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VD7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 156 n n 
C1 C2 EDO sing 157 n n 
C1 H11 EDO sing 158 n n 
C1 H12 EDO sing 159 n n 
O1 HO1 EDO sing 160 n n 
C2 O2 EDO sing 161 n n 
C2 H21 EDO sing 162 n n 
C2 H22 EDO sing 163 n n 
O2 HO2 EDO sing 164 n n 
#
_atom_sites.entry_id                     5VD7 
_atom_sites.fract_transf_matrix[1][1]    0.019924 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004254 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015819 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 99V A 1 601 1 99V LIG . 
C 3 CL A 1 602 1 CL CL . 
D 4 EDO A 1 603 1 EDO EDO . 
E 5 HOH A 1 701 49 HOH HOH . 
E 5 HOH A 2 702 14 HOH HOH . 
E 5 HOH A 3 703 13 HOH HOH . 
E 5 HOH A 4 704 42 HOH HOH . 
E 5 HOH A 5 705 38 HOH HOH . 
E 5 HOH A 6 706 18 HOH HOH . 
E 5 HOH A 7 707 11 HOH HOH . 
E 5 HOH A 8 708 61 HOH HOH . 
E 5 HOH A 9 709 31 HOH HOH . 
E 5 HOH A 10 710 50 HOH HOH . 
E 5 HOH A 11 711 64 HOH HOH . 
E 5 HOH A 12 712 34 HOH HOH . 
E 5 HOH A 13 713 45 HOH HOH . 
E 5 HOH A 14 714 27 HOH HOH . 
E 5 HOH A 15 715 56 HOH HOH . 
E 5 HOH A 16 716 12 HOH HOH . 
E 5 HOH A 17 717 65 HOH HOH . 
E 5 HOH A 18 718 26 HOH HOH . 
E 5 HOH A 19 719 20 HOH HOH . 
E 5 HOH A 20 720 69 HOH HOH . 
E 5 HOH A 21 721 63 HOH HOH . 
E 5 HOH A 22 722 30 HOH HOH . 
E 5 HOH A 23 723 33 HOH HOH . 
E 5 HOH A 24 724 2 HOH HOH . 
E 5 HOH A 25 725 70 HOH HOH . 
E 5 HOH A 26 726 46 HOH HOH . 
E 5 HOH A 27 727 25 HOH HOH . 
E 5 HOH A 28 728 51 HOH HOH . 
E 5 HOH A 29 729 29 HOH HOH . 
E 5 HOH A 30 730 1 HOH HOH . 
E 5 HOH A 31 731 39 HOH HOH . 
E 5 HOH A 32 732 3 HOH HOH . 
E 5 HOH A 33 733 9 HOH HOH . 
E 5 HOH A 34 734 44 HOH HOH . 
E 5 HOH A 35 735 6 HOH HOH . 
E 5 HOH A 36 736 57 HOH HOH . 
E 5 HOH A 37 737 10 HOH HOH . 
E 5 HOH A 38 738 15 HOH HOH . 
E 5 HOH A 39 739 19 HOH HOH . 
E 5 HOH A 40 740 37 HOH HOH . 
E 5 HOH A 41 741 16 HOH HOH . 
E 5 HOH A 42 742 43 HOH HOH . 
E 5 HOH A 43 743 36 HOH HOH . 
E 5 HOH A 44 744 22 HOH HOH . 
E 5 HOH A 45 745 4 HOH HOH . 
E 5 HOH A 46 746 53 HOH HOH . 
E 5 HOH A 47 747 55 HOH HOH . 
E 5 HOH A 48 748 8 HOH HOH . 
E 5 HOH A 49 749 23 HOH HOH . 
E 5 HOH A 50 750 21 HOH HOH . 
E 5 HOH A 51 751 24 HOH HOH . 
E 5 HOH A 52 752 7 HOH HOH . 
E 5 HOH A 53 753 68 HOH HOH . 
E 5 HOH A 54 754 60 HOH HOH . 
E 5 HOH A 55 755 58 HOH HOH . 
E 5 HOH A 56 756 40 HOH HOH . 
E 5 HOH A 57 757 48 HOH HOH . 
E 5 HOH A 58 758 32 HOH HOH . 
E 5 HOH A 59 759 5 HOH HOH . 
E 5 HOH A 60 760 35 HOH HOH . 
E 5 HOH A 61 761 17 HOH HOH . 
E 5 HOH A 62 762 62 HOH HOH . 
E 5 HOH A 63 763 47 HOH HOH . 
E 5 HOH A 64 764 67 HOH HOH . 
E 5 HOH A 65 765 54 HOH HOH . 
E 5 HOH A 66 766 28 HOH HOH . 
E 5 HOH A 67 767 59 HOH HOH . 
E 5 HOH A 68 768 52 HOH HOH . 
E 5 HOH A 69 769 66 HOH HOH . 
E 5 HOH A 70 770 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -0.176 -3.666 22.536 1 63.91 ? C1 EDO 603 A 1 
HETATM 2 O O1 EDO . . . D 4 -1.318 -4.521 22.667 1 64.29 ? O1 EDO 603 A 1 
HETATM 3 C C2 EDO . . . D 4 0.558 -3.98 21.239 1 63.02 ? C2 EDO 603 A 1 
HETATM 4 O O2 EDO . . . D 4 0.991 -5.344 21.254 1 62.46 ? O2 EDO 603 A 1 
HETATM 5 H H11 EDO . . . D 4 -0.496 -2.622 22.535 1 76.69 ? H11 EDO 603 A 1 
HETATM 6 H H12 EDO . . . D 4 0.495 -3.815 23.384 1 76.69 ? H12 EDO 603 A 1 
HETATM 7 H HO1 EDO . . . D 4 -1.78 -4.317 23.492 1 77.15 ? HO1 EDO 603 A 1 
HETATM 8 H H21 EDO . . . D 4 -0.107 -3.813 20.388 1 75.63 ? H21 EDO 603 A 1 
HETATM 9 H H22 EDO . . . D 4 1.421 -3.319 21.132 1 75.63 ? H22 EDO 603 A 1 
HETATM 10 H HO2 EDO . . . D 4 1.457 -5.543 20.431 1 74.95 ? HO2 EDO 603 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
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