data_5VDB # _model_server_result.job_id p9f-p29mbWWnrIFvFzFjuw _model_server_result.datetime_utc '2024-12-26 11:24:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5VDB # _exptl.entry_id 5VDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VDB _cell.length_a 57.335 _cell.length_b 76.121 _cell.length_c 39.149 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 426 n n S O2 SO4 doub 427 n n S O3 SO4 sing 428 n n S O4 SO4 sing 429 n n # _atom_sites.entry_id 5VDB _atom_sites.fract_transf_matrix[1][1] 0.017441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 2 SO4 A 1 204 4 SO4 SO4 . F 2 SO4 A 1 205 5 SO4 SO4 . G 2 SO4 A 1 206 6 SO4 SO4 . H 3 93M A 1 207 1 93M 93M . I 4 HOH A 1 301 140 HOH HOH . I 4 HOH A 2 302 215 HOH HOH . I 4 HOH A 3 303 126 HOH HOH . I 4 HOH A 4 304 40 HOH HOH . I 4 HOH A 5 305 187 HOH HOH . I 4 HOH A 6 306 23 HOH HOH . I 4 HOH A 7 307 83 HOH HOH . I 4 HOH A 8 308 117 HOH HOH . I 4 HOH A 9 309 141 HOH HOH . I 4 HOH A 10 310 16 HOH HOH . I 4 HOH A 11 311 94 HOH HOH . I 4 HOH A 12 312 147 HOH HOH . I 4 HOH A 13 313 42 HOH HOH . I 4 HOH A 14 314 5 HOH HOH . I 4 HOH A 15 315 73 HOH HOH . I 4 HOH A 16 316 150 HOH HOH . I 4 HOH A 17 317 39 HOH HOH . I 4 HOH A 18 318 21 HOH HOH . I 4 HOH A 19 319 63 HOH HOH . I 4 HOH A 20 320 162 HOH HOH . I 4 HOH A 21 321 33 HOH HOH . I 4 HOH A 22 322 92 HOH HOH . I 4 HOH A 23 323 118 HOH HOH . I 4 HOH A 24 324 224 HOH HOH . I 4 HOH A 25 325 66 HOH HOH . I 4 HOH A 26 326 120 HOH HOH . I 4 HOH A 27 327 46 HOH HOH . I 4 HOH A 28 328 100 HOH HOH . I 4 HOH A 29 329 107 HOH HOH . I 4 HOH A 30 330 55 HOH HOH . I 4 HOH A 31 331 166 HOH HOH . I 4 HOH A 32 332 154 HOH HOH . I 4 HOH A 33 333 98 HOH HOH . I 4 HOH A 34 334 69 HOH HOH . I 4 HOH A 35 335 203 HOH HOH . I 4 HOH A 36 336 105 HOH HOH . I 4 HOH A 37 337 124 HOH HOH . I 4 HOH A 38 338 145 HOH HOH . I 4 HOH A 39 339 4 HOH HOH . I 4 HOH A 40 340 144 HOH HOH . I 4 HOH A 41 341 17 HOH HOH . I 4 HOH A 42 342 47 HOH HOH . I 4 HOH A 43 343 110 HOH HOH . I 4 HOH A 44 344 57 HOH HOH . I 4 HOH A 45 345 123 HOH HOH . I 4 HOH A 46 346 7 HOH HOH . I 4 HOH A 47 347 51 HOH HOH . I 4 HOH A 48 348 56 HOH HOH . I 4 HOH A 49 349 54 HOH HOH . I 4 HOH A 50 350 221 HOH HOH . I 4 HOH A 51 351 205 HOH HOH . I 4 HOH A 52 352 151 HOH HOH . I 4 HOH A 53 353 226 HOH HOH . I 4 HOH A 54 354 87 HOH HOH . I 4 HOH A 55 355 103 HOH HOH . I 4 HOH A 56 356 62 HOH HOH . I 4 HOH A 57 357 214 HOH HOH . I 4 HOH A 58 358 19 HOH HOH . I 4 HOH A 59 359 75 HOH HOH . I 4 HOH A 60 360 58 HOH HOH . I 4 HOH A 61 361 53 HOH HOH . I 4 HOH A 62 362 95 HOH HOH . I 4 HOH A 63 363 178 HOH HOH . I 4 HOH A 64 364 64 HOH HOH . I 4 HOH A 65 365 43 HOH HOH . I 4 HOH A 66 366 71 HOH HOH . I 4 HOH A 67 367 61 HOH HOH . I 4 HOH A 68 368 134 HOH HOH . I 4 HOH A 69 369 10 HOH HOH . I 4 HOH A 70 370 32 HOH HOH . I 4 HOH A 71 371 91 HOH HOH . I 4 HOH A 72 372 112 HOH HOH . I 4 HOH A 73 373 45 HOH HOH . I 4 HOH A 74 374 86 HOH HOH . I 4 HOH A 75 375 8 HOH HOH . I 4 HOH A 76 376 163 HOH HOH . I 4 HOH A 77 377 131 HOH HOH . I 4 HOH A 78 378 175 HOH HOH . I 4 HOH A 79 379 102 HOH HOH . I 4 HOH A 80 380 9 HOH HOH . I 4 HOH A 81 381 35 HOH HOH . I 4 HOH A 82 382 208 HOH HOH . I 4 HOH A 83 383 38 HOH HOH . I 4 HOH A 84 384 25 HOH HOH . I 4 HOH A 85 385 70 HOH HOH . I 4 HOH A 86 386 48 HOH HOH . I 4 HOH A 87 387 13 HOH HOH . I 4 HOH A 88 388 96 HOH HOH . I 4 HOH A 89 389 14 HOH HOH . I 4 HOH A 90 390 67 HOH HOH . I 4 HOH A 91 391 155 HOH HOH . I 4 HOH A 92 392 6 HOH HOH . I 4 HOH A 93 393 26 HOH HOH . I 4 HOH A 94 394 2 HOH HOH . I 4 HOH A 95 395 11 HOH HOH . I 4 HOH A 96 396 84 HOH HOH . I 4 HOH A 97 397 68 HOH HOH . I 4 HOH A 98 398 49 HOH HOH . I 4 HOH A 99 399 72 HOH HOH . I 4 HOH A 100 400 108 HOH HOH . I 4 HOH A 101 401 30 HOH HOH . I 4 HOH A 102 402 36 HOH HOH . I 4 HOH A 103 403 160 HOH HOH . I 4 HOH A 104 404 218 HOH HOH . I 4 HOH A 105 405 116 HOH HOH . I 4 HOH A 106 406 50 HOH HOH . I 4 HOH A 107 407 37 HOH HOH . I 4 HOH A 108 408 28 HOH HOH . I 4 HOH A 109 409 20 HOH HOH . I 4 HOH A 110 410 15 HOH HOH . I 4 HOH A 111 411 82 HOH HOH . I 4 HOH A 112 412 3 HOH HOH . I 4 HOH A 113 413 65 HOH HOH . I 4 HOH A 114 414 59 HOH HOH . I 4 HOH A 115 415 60 HOH HOH . I 4 HOH A 116 416 161 HOH HOH . I 4 HOH A 117 417 111 HOH HOH . I 4 HOH A 118 418 104 HOH HOH . I 4 HOH A 119 419 216 HOH HOH . I 4 HOH A 120 420 18 HOH HOH . I 4 HOH A 121 421 177 HOH HOH . I 4 HOH A 122 422 85 HOH HOH . I 4 HOH A 123 423 156 HOH HOH . I 4 HOH A 124 424 34 HOH HOH . I 4 HOH A 125 425 179 HOH HOH . I 4 HOH A 126 426 190 HOH HOH . I 4 HOH A 127 427 27 HOH HOH . I 4 HOH A 128 428 119 HOH HOH . I 4 HOH A 129 429 101 HOH HOH . I 4 HOH A 130 430 153 HOH HOH . I 4 HOH A 131 431 29 HOH HOH . I 4 HOH A 132 432 125 HOH HOH . I 4 HOH A 133 433 22 HOH HOH . I 4 HOH A 134 434 31 HOH HOH . I 4 HOH A 135 435 24 HOH HOH . I 4 HOH A 136 436 115 HOH HOH . I 4 HOH A 137 437 76 HOH HOH . I 4 HOH A 138 438 222 HOH HOH . I 4 HOH A 139 439 198 HOH HOH . I 4 HOH A 140 440 41 HOH HOH . I 4 HOH A 141 441 200 HOH HOH . I 4 HOH A 142 442 81 HOH HOH . I 4 HOH A 143 443 219 HOH HOH . I 4 HOH A 144 444 191 HOH HOH . I 4 HOH A 145 445 210 HOH HOH . I 4 HOH A 146 446 158 HOH HOH . I 4 HOH A 147 447 142 HOH HOH . I 4 HOH A 148 448 174 HOH HOH . I 4 HOH A 149 449 77 HOH HOH . I 4 HOH A 150 450 167 HOH HOH . I 4 HOH A 151 451 173 HOH HOH . I 4 HOH A 152 452 152 HOH HOH . I 4 HOH A 153 453 199 HOH HOH . I 4 HOH A 154 454 121 HOH HOH . I 4 HOH A 155 455 136 HOH HOH . I 4 HOH A 156 456 74 HOH HOH . I 4 HOH A 157 457 143 HOH HOH . I 4 HOH A 158 458 79 HOH HOH . I 4 HOH A 159 459 185 HOH HOH . I 4 HOH A 160 460 113 HOH HOH . I 4 HOH A 161 461 133 HOH HOH . I 4 HOH A 162 462 192 HOH HOH . I 4 HOH A 163 463 114 HOH HOH . I 4 HOH A 164 464 89 HOH HOH . I 4 HOH A 165 465 44 HOH HOH . I 4 HOH A 166 466 132 HOH HOH . I 4 HOH A 167 467 52 HOH HOH . I 4 HOH A 168 468 223 HOH HOH . I 4 HOH A 169 469 202 HOH HOH . I 4 HOH A 170 470 181 HOH HOH . I 4 HOH A 171 471 176 HOH HOH . I 4 HOH A 172 472 139 HOH HOH . I 4 HOH A 173 473 80 HOH HOH . I 4 HOH A 174 474 135 HOH HOH . I 4 HOH A 175 475 138 HOH HOH . I 4 HOH A 176 476 159 HOH HOH . I 4 HOH A 177 477 109 HOH HOH . I 4 HOH A 178 478 78 HOH HOH . I 4 HOH A 179 479 217 HOH HOH . I 4 HOH A 180 480 97 HOH HOH . I 4 HOH A 181 481 211 HOH HOH . I 4 HOH A 182 482 122 HOH HOH . I 4 HOH A 183 483 197 HOH HOH . I 4 HOH A 184 484 206 HOH HOH . I 4 HOH A 185 485 130 HOH HOH . I 4 HOH A 186 486 149 HOH HOH . I 4 HOH A 187 487 137 HOH HOH . I 4 HOH A 188 488 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 -24.697 17.509 -4.456 1 45.27 ? S SO4 201 A 1 HETATM 2 O O1 SO4 . . . B 2 -24.861 16.516 -5.545 1 49.5 ? O1 SO4 201 A 1 HETATM 3 O O2 SO4 . . . B 2 -25.172 18.83 -4.921 1 50.42 ? O2 SO4 201 A 1 HETATM 4 O O3 SO4 . . . B 2 -25.492 17.106 -3.274 1 47.33 ? O3 SO4 201 A 1 HETATM 5 O O4 SO4 . . . B 2 -23.266 17.606 -4.103 1 48.77 ? O4 SO4 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #