data_5VDE # _model_server_result.job_id ZnnF77rE0w7InK9kqibIvg _model_server_result.datetime_utc '2024-11-28 03:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5VDE # _exptl.entry_id 5VDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (I) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.91 _cell.angle_gamma 90 _cell.entry_id 5VDE _cell.length_a 35.976 _cell.length_b 80.054 _cell.length_c 50.763 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 A,B,E,G,H 3 1 C,D,F,I,J 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_454 x-1,y,z-1 1 0 0 0 1 0 0 0 1 -27.239635 0 -50.005581 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 15 A CYS 15 1_555 E CU CU1 . A CU1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A SG CYS 18 A CYS 18 1_555 E CU CU1 . A CU1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 E CU CU1 . A CU1 101 1_555 B SG CYS 15 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 E CU CU1 . A CU1 101 1_555 B SG CYS 18 B CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 C SG CYS 15 C CYS 15 1_555 F CU CU1 . C CU1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 C SG CYS 18 C CYS 18 1_555 F CU CU1 . C CU1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc7 F CU CU1 . C CU1 101 1_555 D SG CYS 15 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 F CU CU1 . C CU1 101 1_555 D SG CYS 18 D CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'Cu 1' _chem_comp.formula_weight 63.546 _chem_comp.id CU1 _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (I) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VDE _atom_sites.fract_transf_matrix[1][1] 0.027796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU1 A 1 101 1 CU1 CU . F 2 CU1 C 1 101 2 CU1 CU . G 3 HOH A 1 201 162 HOH HOH . G 3 HOH A 2 202 213 HOH HOH . G 3 HOH A 3 203 12 HOH HOH . G 3 HOH A 4 204 54 HOH HOH . G 3 HOH A 5 205 50 HOH HOH . G 3 HOH A 6 206 187 HOH HOH . G 3 HOH A 7 207 86 HOH HOH . G 3 HOH A 8 208 77 HOH HOH . G 3 HOH A 9 209 189 HOH HOH . G 3 HOH A 10 210 68 HOH HOH . G 3 HOH A 11 211 42 HOH HOH . G 3 HOH A 12 212 87 HOH HOH . G 3 HOH A 13 213 72 HOH HOH . G 3 HOH A 14 214 18 HOH HOH . G 3 HOH A 15 215 38 HOH HOH . G 3 HOH A 16 216 217 HOH HOH . G 3 HOH A 17 217 82 HOH HOH . G 3 HOH A 18 218 35 HOH HOH . G 3 HOH A 19 219 174 HOH HOH . G 3 HOH A 20 220 5 HOH HOH . G 3 HOH A 21 221 23 HOH HOH . G 3 HOH A 22 222 27 HOH HOH . G 3 HOH A 23 223 222 HOH HOH . G 3 HOH A 24 224 25 HOH HOH . G 3 HOH A 25 225 185 HOH HOH . G 3 HOH A 26 226 31 HOH HOH . G 3 HOH A 27 227 121 HOH HOH . G 3 HOH A 28 228 78 HOH HOH . G 3 HOH A 29 229 181 HOH HOH . G 3 HOH A 30 230 65 HOH HOH . G 3 HOH A 31 231 45 HOH HOH . G 3 HOH A 32 232 63 HOH HOH . G 3 HOH A 33 233 69 HOH HOH . G 3 HOH A 34 234 3 HOH HOH . G 3 HOH A 35 235 225 HOH HOH . G 3 HOH A 36 236 122 HOH HOH . G 3 HOH A 37 237 216 HOH HOH . G 3 HOH A 38 238 83 HOH HOH . G 3 HOH A 39 239 190 HOH HOH . G 3 HOH A 40 240 44 HOH HOH . G 3 HOH A 41 241 41 HOH HOH . G 3 HOH A 42 242 76 HOH HOH . G 3 HOH A 43 243 29 HOH HOH . G 3 HOH A 44 244 148 HOH HOH . G 3 HOH A 45 245 70 HOH HOH . G 3 HOH A 46 246 161 HOH HOH . G 3 HOH A 47 247 80 HOH HOH . G 3 HOH A 48 248 16 HOH HOH . G 3 HOH A 49 249 64 HOH HOH . G 3 HOH A 50 250 71 HOH HOH . G 3 HOH A 51 251 123 HOH HOH . G 3 HOH A 52 252 183 HOH HOH . G 3 HOH A 53 253 43 HOH HOH . G 3 HOH A 54 254 75 HOH HOH . G 3 HOH A 55 255 74 HOH HOH . G 3 HOH A 56 256 179 HOH HOH . G 3 HOH A 57 257 215 HOH HOH . G 3 HOH A 58 258 73 HOH HOH . G 3 HOH A 59 259 164 HOH HOH . G 3 HOH A 60 260 180 HOH HOH . G 3 HOH A 61 261 67 HOH HOH . G 3 HOH A 62 262 66 HOH HOH . G 3 HOH A 63 263 188 HOH HOH . G 3 HOH A 64 264 79 HOH HOH . H 3 HOH B 1 201 120 HOH HOH . H 3 HOH B 2 202 133 HOH HOH . H 3 HOH B 3 203 94 HOH HOH . H 3 HOH B 4 204 98 HOH HOH . H 3 HOH B 5 205 206 HOH HOH . H 3 HOH B 6 206 26 HOH HOH . H 3 HOH B 7 207 223 HOH HOH . H 3 HOH B 8 208 125 HOH HOH . H 3 HOH B 9 209 197 HOH HOH . H 3 HOH B 10 210 20 HOH HOH . H 3 HOH B 11 211 58 HOH HOH . H 3 HOH B 12 212 11 HOH HOH . H 3 HOH B 13 213 129 HOH HOH . H 3 HOH B 14 214 96 HOH HOH . H 3 HOH B 15 215 97 HOH HOH . H 3 HOH B 16 216 195 HOH HOH . H 3 HOH B 17 217 99 HOH HOH . H 3 HOH B 18 218 224 HOH HOH . H 3 HOH B 19 219 127 HOH HOH . H 3 HOH B 20 220 93 HOH HOH . H 3 HOH B 21 221 8 HOH HOH . H 3 HOH B 22 222 52 HOH HOH . H 3 HOH B 23 223 139 HOH HOH . H 3 HOH B 24 224 95 HOH HOH . H 3 HOH B 25 225 9 HOH HOH . H 3 HOH B 26 226 24 HOH HOH . H 3 HOH B 27 227 56 HOH HOH . H 3 HOH B 28 228 21 HOH HOH . H 3 HOH B 29 229 32 HOH HOH . H 3 HOH B 30 230 88 HOH HOH . H 3 HOH B 31 231 211 HOH HOH . H 3 HOH B 32 232 49 HOH HOH . H 3 HOH B 33 233 91 HOH HOH . H 3 HOH B 34 234 46 HOH HOH . H 3 HOH B 35 235 13 HOH HOH . H 3 HOH B 36 236 10 HOH HOH . H 3 HOH B 37 237 1 HOH HOH . H 3 HOH B 38 238 170 HOH HOH . H 3 HOH B 39 239 191 HOH HOH . H 3 HOH B 40 240 193 HOH HOH . H 3 HOH B 41 241 19 HOH HOH . H 3 HOH B 42 242 134 HOH HOH . H 3 HOH B 43 243 48 HOH HOH . H 3 HOH B 44 244 34 HOH HOH . H 3 HOH B 45 245 22 HOH HOH . H 3 HOH B 46 246 196 HOH HOH . H 3 HOH B 47 247 212 HOH HOH . H 3 HOH B 48 248 220 HOH HOH . H 3 HOH B 49 249 15 HOH HOH . H 3 HOH B 50 250 194 HOH HOH . H 3 HOH B 51 251 2 HOH HOH . H 3 HOH B 52 252 171 HOH HOH . H 3 HOH B 53 253 37 HOH HOH . H 3 HOH B 54 254 184 HOH HOH . H 3 HOH B 55 255 192 HOH HOH . H 3 HOH B 56 256 228 HOH HOH . H 3 HOH B 57 257 60 HOH HOH . H 3 HOH B 58 258 92 HOH HOH . H 3 HOH B 59 259 159 HOH HOH . H 3 HOH B 60 260 126 HOH HOH . H 3 HOH B 61 261 84 HOH HOH . H 3 HOH B 62 262 89 HOH HOH . H 3 HOH B 63 263 135 HOH HOH . H 3 HOH B 64 264 90 HOH HOH . H 3 HOH B 65 265 130 HOH HOH . H 3 HOH B 66 266 221 HOH HOH . H 3 HOH B 67 267 169 HOH HOH . I 3 HOH C 1 201 102 HOH HOH . I 3 HOH C 2 202 128 HOH HOH . I 3 HOH C 3 203 30 HOH HOH . I 3 HOH C 4 204 172 HOH HOH . I 3 HOH C 5 205 144 HOH HOH . I 3 HOH C 6 206 153 HOH HOH . I 3 HOH C 7 207 111 HOH HOH . I 3 HOH C 8 208 55 HOH HOH . I 3 HOH C 9 209 145 HOH HOH . I 3 HOH C 10 210 150 HOH HOH . I 3 HOH C 11 211 115 HOH HOH . I 3 HOH C 12 212 62 HOH HOH . I 3 HOH C 13 213 104 HOH HOH . I 3 HOH C 14 214 214 HOH HOH . I 3 HOH C 15 215 168 HOH HOH . I 3 HOH C 16 216 53 HOH HOH . I 3 HOH C 17 217 40 HOH HOH . I 3 HOH C 18 218 107 HOH HOH . I 3 HOH C 19 219 141 HOH HOH . I 3 HOH C 20 220 61 HOH HOH . I 3 HOH C 21 221 117 HOH HOH . I 3 HOH C 22 222 178 HOH HOH . I 3 HOH C 23 223 103 HOH HOH . I 3 HOH C 24 224 7 HOH HOH . I 3 HOH C 25 225 138 HOH HOH . I 3 HOH C 26 226 101 HOH HOH . I 3 HOH C 27 227 198 HOH HOH . I 3 HOH C 28 228 136 HOH HOH . I 3 HOH C 29 229 146 HOH HOH . I 3 HOH C 30 230 39 HOH HOH . I 3 HOH C 31 231 109 HOH HOH . I 3 HOH C 32 232 137 HOH HOH . I 3 HOH C 33 233 108 HOH HOH . I 3 HOH C 34 234 151 HOH HOH . I 3 HOH C 35 235 155 HOH HOH . I 3 HOH C 36 236 165 HOH HOH . I 3 HOH C 37 237 143 HOH HOH . I 3 HOH C 38 238 28 HOH HOH . I 3 HOH C 39 239 106 HOH HOH . I 3 HOH C 40 240 33 HOH HOH . I 3 HOH C 41 241 177 HOH HOH . I 3 HOH C 42 242 200 HOH HOH . I 3 HOH C 43 243 100 HOH HOH . I 3 HOH C 44 244 226 HOH HOH . I 3 HOH C 45 245 105 HOH HOH . I 3 HOH C 46 246 205 HOH HOH . I 3 HOH C 47 247 154 HOH HOH . I 3 HOH C 48 248 114 HOH HOH . I 3 HOH C 49 249 140 HOH HOH . I 3 HOH C 50 250 176 HOH HOH . I 3 HOH C 51 251 149 HOH HOH . I 3 HOH C 52 252 152 HOH HOH . I 3 HOH C 53 253 202 HOH HOH . I 3 HOH C 54 254 142 HOH HOH . I 3 HOH C 55 255 209 HOH HOH . I 3 HOH C 56 256 157 HOH HOH . J 3 HOH D 1 201 124 HOH HOH . J 3 HOH D 2 202 113 HOH HOH . J 3 HOH D 3 203 227 HOH HOH . J 3 HOH D 4 204 160 HOH HOH . J 3 HOH D 5 205 218 HOH HOH . J 3 HOH D 6 206 118 HOH HOH . J 3 HOH D 7 207 57 HOH HOH . J 3 HOH D 8 208 201 HOH HOH . J 3 HOH D 9 209 59 HOH HOH . J 3 HOH D 10 210 6 HOH HOH . J 3 HOH D 11 211 14 HOH HOH . J 3 HOH D 12 212 186 HOH HOH . J 3 HOH D 13 213 204 HOH HOH . J 3 HOH D 14 214 119 HOH HOH . J 3 HOH D 15 215 4 HOH HOH . J 3 HOH D 16 216 47 HOH HOH . J 3 HOH D 17 217 132 HOH HOH . J 3 HOH D 18 218 156 HOH HOH . J 3 HOH D 19 219 166 HOH HOH . J 3 HOH D 20 220 81 HOH HOH . J 3 HOH D 21 221 208 HOH HOH . J 3 HOH D 22 222 219 HOH HOH . J 3 HOH D 23 223 116 HOH HOH . J 3 HOH D 24 224 147 HOH HOH . J 3 HOH D 25 225 17 HOH HOH . J 3 HOH D 26 226 210 HOH HOH . J 3 HOH D 27 227 173 HOH HOH . J 3 HOH D 28 228 51 HOH HOH . J 3 HOH D 29 229 182 HOH HOH . J 3 HOH D 30 230 112 HOH HOH . J 3 HOH D 31 231 36 HOH HOH . J 3 HOH D 32 232 163 HOH HOH . J 3 HOH D 33 233 203 HOH HOH . J 3 HOH D 34 234 158 HOH HOH . J 3 HOH D 35 235 175 HOH HOH . J 3 HOH D 36 236 85 HOH HOH . J 3 HOH D 37 237 131 HOH HOH . J 3 HOH D 38 238 207 HOH HOH . J 3 HOH D 39 239 110 HOH HOH . J 3 HOH D 40 240 167 HOH HOH . J 3 HOH D 41 241 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU1 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 29.834 _atom_site.Cartn_y -0.732 _atom_site.Cartn_z 8.799 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU1 _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 586 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #