data_5VDP
#
_model_server_result.job_id            tUUyqrPjUC4C4Xt8P3ZK7Q 
_model_server_result.datetime_utc      '2024-10-15 10:26:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    5VDP 
#
_exptl.entry_id    5VDP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.45 
_cell.angle_gamma         90 
_cell.entry_id            5VDP 
_cell.length_a            215.886 
_cell.length_b            46.733 
_cell.length_c            88.165 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 126 A LYS 285 1_555 F O4 SO4 . A SO4 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
metalc ? metalc1 A NE2 HIS 231 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc2 A SG CYS 237 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc3 A SG CYS 238 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc4 A SG CYS 245 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc5 B NE2 HIS 231 B HIS 390 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc6 B SG CYS 237 B CYS 396 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc7 B SG CYS 238 B CYS 397 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc8 B SG CYS 245 B CYS 404 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 365 n n 
S O2 SO4 doub 366 n n 
S O3 SO4 sing 367 n n 
S O4 SO4 sing 368 n n 
#
_atom_sites.entry_id                     5VDP 
_atom_sites.fract_transf_matrix[1][1]    0.004632 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001728 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021398 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012106 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 601 601 ZN ZN . 
D 3 SO4 A 1 602 1 SO4 SO4 . 
E 3 SO4 A 1 603 4 SO4 SO4 . 
F 3 SO4 A 1 604 5 SO4 SO4 . 
G 4 1SY A 1 605 2 1SY LIG . 
H 2 ZN B 1 601 601 ZN ZN . 
I 3 SO4 B 1 602 2 SO4 SO4 . 
J 3 SO4 B 1 603 3 SO4 SO4 . 
K 4 1SY B 1 604 1 1SY LIG . 
L 5 HOH A 1 701 60 HOH HOH . 
L 5 HOH A 2 702 75 HOH HOH . 
L 5 HOH A 3 703 74 HOH HOH . 
L 5 HOH A 4 704 87 HOH HOH . 
L 5 HOH A 5 705 38 HOH HOH . 
L 5 HOH A 6 706 14 HOH HOH . 
L 5 HOH A 7 707 43 HOH HOH . 
L 5 HOH A 8 708 19 HOH HOH . 
L 5 HOH A 9 709 56 HOH HOH . 
L 5 HOH A 10 710 26 HOH HOH . 
L 5 HOH A 11 711 78 HOH HOH . 
L 5 HOH A 12 712 91 HOH HOH . 
L 5 HOH A 13 713 117 HOH HOH . 
L 5 HOH A 14 714 49 HOH HOH . 
L 5 HOH A 15 715 9 HOH HOH . 
L 5 HOH A 16 716 68 HOH HOH . 
L 5 HOH A 17 717 124 HOH HOH . 
L 5 HOH A 18 718 39 HOH HOH . 
L 5 HOH A 19 719 31 HOH HOH . 
L 5 HOH A 20 720 12 HOH HOH . 
L 5 HOH A 21 721 2 HOH HOH . 
L 5 HOH A 22 722 98 HOH HOH . 
L 5 HOH A 23 723 103 HOH HOH . 
L 5 HOH A 24 724 104 HOH HOH . 
L 5 HOH A 25 725 37 HOH HOH . 
L 5 HOH A 26 726 62 HOH HOH . 
L 5 HOH A 27 727 94 HOH HOH . 
L 5 HOH A 28 728 113 HOH HOH . 
L 5 HOH A 29 729 50 HOH HOH . 
L 5 HOH A 30 730 11 HOH HOH . 
L 5 HOH A 31 731 79 HOH HOH . 
L 5 HOH A 32 732 27 HOH HOH . 
L 5 HOH A 33 733 33 HOH HOH . 
L 5 HOH A 34 734 81 HOH HOH . 
L 5 HOH A 35 735 3 HOH HOH . 
L 5 HOH A 36 736 17 HOH HOH . 
L 5 HOH A 37 737 88 HOH HOH . 
L 5 HOH A 38 738 45 HOH HOH . 
L 5 HOH A 39 739 73 HOH HOH . 
L 5 HOH A 40 740 24 HOH HOH . 
L 5 HOH A 41 741 127 HOH HOH . 
L 5 HOH A 42 742 85 HOH HOH . 
L 5 HOH A 43 743 77 HOH HOH . 
L 5 HOH A 44 744 105 HOH HOH . 
L 5 HOH A 45 745 129 HOH HOH . 
L 5 HOH A 46 746 130 HOH HOH . 
L 5 HOH A 47 747 128 HOH HOH . 
L 5 HOH A 48 748 42 HOH HOH . 
L 5 HOH A 49 749 118 HOH HOH . 
L 5 HOH A 50 750 54 HOH HOH . 
L 5 HOH A 51 751 83 HOH HOH . 
L 5 HOH A 52 752 116 HOH HOH . 
L 5 HOH A 53 753 28 HOH HOH . 
L 5 HOH A 54 754 69 HOH HOH . 
L 5 HOH A 55 755 84 HOH HOH . 
M 5 HOH B 1 701 7 HOH HOH . 
M 5 HOH B 2 702 107 HOH HOH . 
M 5 HOH B 3 703 101 HOH HOH . 
M 5 HOH B 4 704 121 HOH HOH . 
M 5 HOH B 5 705 93 HOH HOH . 
M 5 HOH B 6 706 114 HOH HOH . 
M 5 HOH B 7 707 5 HOH HOH . 
M 5 HOH B 8 708 8 HOH HOH . 
M 5 HOH B 9 709 66 HOH HOH . 
M 5 HOH B 10 710 92 HOH HOH . 
M 5 HOH B 11 711 41 HOH HOH . 
M 5 HOH B 12 712 106 HOH HOH . 
M 5 HOH B 13 713 16 HOH HOH . 
M 5 HOH B 14 714 126 HOH HOH . 
M 5 HOH B 15 715 109 HOH HOH . 
M 5 HOH B 16 716 90 HOH HOH . 
M 5 HOH B 17 717 59 HOH HOH . 
M 5 HOH B 18 718 53 HOH HOH . 
M 5 HOH B 19 719 70 HOH HOH . 
M 5 HOH B 20 720 18 HOH HOH . 
M 5 HOH B 21 721 15 HOH HOH . 
M 5 HOH B 22 722 123 HOH HOH . 
M 5 HOH B 23 723 34 HOH HOH . 
M 5 HOH B 24 724 95 HOH HOH . 
M 5 HOH B 25 725 82 HOH HOH . 
M 5 HOH B 26 726 48 HOH HOH . 
M 5 HOH B 27 727 30 HOH HOH . 
M 5 HOH B 28 728 40 HOH HOH . 
M 5 HOH B 29 729 51 HOH HOH . 
M 5 HOH B 30 730 86 HOH HOH . 
M 5 HOH B 31 731 115 HOH HOH . 
M 5 HOH B 32 732 125 HOH HOH . 
M 5 HOH B 33 733 120 HOH HOH . 
M 5 HOH B 34 734 52 HOH HOH . 
M 5 HOH B 35 735 20 HOH HOH . 
M 5 HOH B 36 736 44 HOH HOH . 
M 5 HOH B 37 737 65 HOH HOH . 
M 5 HOH B 38 738 99 HOH HOH . 
M 5 HOH B 39 739 110 HOH HOH . 
M 5 HOH B 40 740 76 HOH HOH . 
M 5 HOH B 41 741 64 HOH HOH . 
M 5 HOH B 42 742 23 HOH HOH . 
M 5 HOH B 43 743 72 HOH HOH . 
M 5 HOH B 44 744 122 HOH HOH . 
M 5 HOH B 45 745 108 HOH HOH . 
M 5 HOH B 46 746 136 HOH HOH . 
M 5 HOH B 47 747 47 HOH HOH . 
M 5 HOH B 48 748 46 HOH HOH . 
M 5 HOH B 49 749 63 HOH HOH . 
M 5 HOH B 50 750 1 HOH HOH . 
M 5 HOH B 51 751 80 HOH HOH . 
M 5 HOH B 52 752 32 HOH HOH . 
M 5 HOH B 53 753 4 HOH HOH . 
M 5 HOH B 54 754 35 HOH HOH . 
M 5 HOH B 55 755 135 HOH HOH . 
M 5 HOH B 56 756 55 HOH HOH . 
M 5 HOH B 57 757 112 HOH HOH . 
M 5 HOH B 58 758 36 HOH HOH . 
M 5 HOH B 59 759 22 HOH HOH . 
M 5 HOH B 60 760 131 HOH HOH . 
M 5 HOH B 61 761 67 HOH HOH . 
M 5 HOH B 62 762 111 HOH HOH . 
M 5 HOH B 63 763 97 HOH HOH . 
M 5 HOH B 64 764 29 HOH HOH . 
M 5 HOH B 65 765 58 HOH HOH . 
M 5 HOH B 66 766 132 HOH HOH . 
M 5 HOH B 67 767 119 HOH HOH . 
M 5 HOH B 68 768 100 HOH HOH . 
M 5 HOH B 69 769 57 HOH HOH . 
M 5 HOH B 70 770 134 HOH HOH . 
M 5 HOH B 71 771 96 HOH HOH . 
M 5 HOH B 72 772 21 HOH HOH . 
M 5 HOH B 73 773 25 HOH HOH . 
M 5 HOH B 74 774 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . F 3 -18.956 32.756 45.902 0.72 65.64 ? S SO4 604 A 1 
HETATM 2 O O1 SO4 . . . F 3 -17.522 32.529 45.733 0.72 69.57 ? O1 SO4 604 A 1 
HETATM 3 O O2 SO4 . . . F 3 -19.614 32.55 44.612 0.72 66.69 ? O2 SO4 604 A 1 
HETATM 4 O O3 SO4 . . . F 3 -19.497 31.816 46.878 0.72 64.3 ? O3 SO4 604 A 1 
HETATM 5 O O4 SO4 . . . F 3 -19.173 34.127 46.365 0.72 60.07 ? O4 SO4 604 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#