data_5VDS
#
_model_server_result.job_id            pMntVKRohYmu9_Zp9MSNRA 
_model_server_result.datetime_utc      '2024-11-29 08:06:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5VDS 
#
_exptl.entry_id    5VDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.81 
_cell.angle_gamma         90 
_cell.entry_id            5VDS 
_cell.length_a            215.45 
_cell.length_b            48.408 
_cell.length_c            86.086 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 231 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc2 A SG CYS 237 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc3 A SG CYS 238 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc4 A SG CYS 245 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc5 B NE2 HIS 231 B HIS 390 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 B SG CYS 237 B CYS 396 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc7 B SG CYS 238 B CYS 397 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc8 B SG CYS 245 B CYS 404 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VDS 
_atom_sites.fract_transf_matrix[1][1]    0.004641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001228 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 601 601 ZN ZN . 
D 3 9BJ A 1 602 1 9BJ LIG . 
E 2 ZN B 1 601 601 ZN ZN . 
F 3 9BJ B 1 602 1 9BJ LIG . 
G 4 HOH A 1 701 47 HOH HOH . 
G 4 HOH A 2 702 17 HOH HOH . 
G 4 HOH A 3 703 50 HOH HOH . 
G 4 HOH A 4 704 52 HOH HOH . 
G 4 HOH A 5 705 8 HOH HOH . 
G 4 HOH A 6 706 29 HOH HOH . 
G 4 HOH A 7 707 18 HOH HOH . 
G 4 HOH A 8 708 89 HOH HOH . 
G 4 HOH A 9 709 67 HOH HOH . 
G 4 HOH A 10 710 54 HOH HOH . 
G 4 HOH A 11 711 90 HOH HOH . 
G 4 HOH A 12 712 72 HOH HOH . 
G 4 HOH A 13 713 16 HOH HOH . 
G 4 HOH A 14 714 20 HOH HOH . 
G 4 HOH A 15 715 13 HOH HOH . 
G 4 HOH A 16 716 76 HOH HOH . 
G 4 HOH A 17 717 36 HOH HOH . 
G 4 HOH A 18 718 38 HOH HOH . 
G 4 HOH A 19 719 21 HOH HOH . 
G 4 HOH A 20 720 11 HOH HOH . 
G 4 HOH A 21 721 19 HOH HOH . 
G 4 HOH A 22 722 5 HOH HOH . 
G 4 HOH A 23 723 30 HOH HOH . 
G 4 HOH A 24 724 81 HOH HOH . 
G 4 HOH A 25 725 86 HOH HOH . 
G 4 HOH A 26 726 60 HOH HOH . 
G 4 HOH A 27 727 64 HOH HOH . 
G 4 HOH A 28 728 48 HOH HOH . 
G 4 HOH A 29 729 10 HOH HOH . 
G 4 HOH A 30 730 41 HOH HOH . 
G 4 HOH A 31 731 87 HOH HOH . 
G 4 HOH A 32 732 66 HOH HOH . 
G 4 HOH A 33 733 9 HOH HOH . 
G 4 HOH A 34 734 39 HOH HOH . 
G 4 HOH A 35 735 44 HOH HOH . 
G 4 HOH A 36 736 61 HOH HOH . 
G 4 HOH A 37 737 14 HOH HOH . 
H 4 HOH B 1 701 46 HOH HOH . 
H 4 HOH B 2 702 51 HOH HOH . 
H 4 HOH B 3 703 88 HOH HOH . 
H 4 HOH B 4 704 4 HOH HOH . 
H 4 HOH B 5 705 74 HOH HOH . 
H 4 HOH B 6 706 70 HOH HOH . 
H 4 HOH B 7 707 63 HOH HOH . 
H 4 HOH B 8 708 40 HOH HOH . 
H 4 HOH B 9 709 24 HOH HOH . 
H 4 HOH B 10 710 45 HOH HOH . 
H 4 HOH B 11 711 71 HOH HOH . 
H 4 HOH B 12 712 59 HOH HOH . 
H 4 HOH B 13 713 57 HOH HOH . 
H 4 HOH B 14 714 79 HOH HOH . 
H 4 HOH B 15 715 15 HOH HOH . 
H 4 HOH B 16 716 22 HOH HOH . 
H 4 HOH B 17 717 75 HOH HOH . 
H 4 HOH B 18 718 68 HOH HOH . 
H 4 HOH B 19 719 42 HOH HOH . 
H 4 HOH B 20 720 27 HOH HOH . 
H 4 HOH B 21 721 6 HOH HOH . 
H 4 HOH B 22 722 26 HOH HOH . 
H 4 HOH B 23 723 37 HOH HOH . 
H 4 HOH B 24 724 43 HOH HOH . 
H 4 HOH B 25 725 3 HOH HOH . 
H 4 HOH B 26 726 65 HOH HOH . 
H 4 HOH B 27 727 53 HOH HOH . 
H 4 HOH B 28 728 33 HOH HOH . 
H 4 HOH B 29 729 69 HOH HOH . 
H 4 HOH B 30 730 12 HOH HOH . 
H 4 HOH B 31 731 2 HOH HOH . 
H 4 HOH B 32 732 7 HOH HOH . 
H 4 HOH B 33 733 23 HOH HOH . 
H 4 HOH B 34 734 1 HOH HOH . 
H 4 HOH B 35 735 32 HOH HOH . 
H 4 HOH B 36 736 84 HOH HOH . 
H 4 HOH B 37 737 82 HOH HOH . 
H 4 HOH B 38 738 31 HOH HOH . 
H 4 HOH B 39 739 56 HOH HOH . 
H 4 HOH B 40 740 73 HOH HOH . 
H 4 HOH B 41 741 55 HOH HOH . 
H 4 HOH B 42 742 62 HOH HOH . 
H 4 HOH B 43 743 34 HOH HOH . 
H 4 HOH B 44 744 28 HOH HOH . 
H 4 HOH B 45 745 85 HOH HOH . 
H 4 HOH B 46 746 25 HOH HOH . 
H 4 HOH B 47 747 78 HOH HOH . 
H 4 HOH B 48 748 49 HOH HOH . 
H 4 HOH B 49 749 80 HOH HOH . 
H 4 HOH B 50 750 58 HOH HOH . 
H 4 HOH B 51 751 35 HOH HOH . 
H 4 HOH B 52 752 83 HOH HOH . 
H 4 HOH B 53 753 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -45.088 
_atom_site.Cartn_y               4.808 
_atom_site.Cartn_z               -9.559 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.08 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#