data_5VDT
#
_model_server_result.job_id            oLkVwOQQyutpp-3aViGlyQ 
_model_server_result.datetime_utc      '2024-11-30 09:05:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vdt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5VDT 
#
_exptl.entry_id    5VDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.07 
_cell.angle_gamma         90 
_cell.entry_id            5VDT 
_cell.length_a            213.896 
_cell.length_b            47.975 
_cell.length_c            88.274 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 231 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc2 A SG CYS 237 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc3 A SG CYS 238 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 A SG CYS 245 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc5 B NE2 HIS 231 B HIS 390 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc6 B SG CYS 237 B CYS 396 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 B SG CYS 238 B CYS 397 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc8 B SG CYS 245 B CYS 404 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VDT 
_atom_sites.fract_transf_matrix[1][1]    0.004675 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001708 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 601 601 ZN ZN . 
D 3 4BW A 1 602 1 4BW LIG . 
E 2 ZN B 1 601 601 ZN ZN . 
F 3 4BW B 1 602 1 4BW LIG . 
G 4 HOH A 1 701 142 HOH HOH . 
G 4 HOH A 2 702 60 HOH HOH . 
G 4 HOH A 3 703 133 HOH HOH . 
G 4 HOH A 4 704 143 HOH HOH . 
G 4 HOH A 5 705 126 HOH HOH . 
G 4 HOH A 6 706 162 HOH HOH . 
G 4 HOH A 7 707 115 HOH HOH . 
G 4 HOH A 8 708 146 HOH HOH . 
G 4 HOH A 9 709 119 HOH HOH . 
G 4 HOH A 10 710 170 HOH HOH . 
G 4 HOH A 11 711 45 HOH HOH . 
G 4 HOH A 12 712 118 HOH HOH . 
G 4 HOH A 13 713 14 HOH HOH . 
G 4 HOH A 14 714 163 HOH HOH . 
G 4 HOH A 15 715 9 HOH HOH . 
G 4 HOH A 16 716 19 HOH HOH . 
G 4 HOH A 17 717 85 HOH HOH . 
G 4 HOH A 18 718 135 HOH HOH . 
G 4 HOH A 19 719 42 HOH HOH . 
G 4 HOH A 20 720 98 HOH HOH . 
G 4 HOH A 21 721 56 HOH HOH . 
G 4 HOH A 22 722 62 HOH HOH . 
G 4 HOH A 23 723 75 HOH HOH . 
G 4 HOH A 24 724 38 HOH HOH . 
G 4 HOH A 25 725 127 HOH HOH . 
G 4 HOH A 26 726 116 HOH HOH . 
G 4 HOH A 27 727 68 HOH HOH . 
G 4 HOH A 28 728 171 HOH HOH . 
G 4 HOH A 29 729 160 HOH HOH . 
G 4 HOH A 30 730 11 HOH HOH . 
G 4 HOH A 31 731 159 HOH HOH . 
G 4 HOH A 32 732 124 HOH HOH . 
G 4 HOH A 33 733 122 HOH HOH . 
G 4 HOH A 34 734 152 HOH HOH . 
G 4 HOH A 35 735 7 HOH HOH . 
G 4 HOH A 36 736 128 HOH HOH . 
G 4 HOH A 37 737 49 HOH HOH . 
G 4 HOH A 38 738 88 HOH HOH . 
G 4 HOH A 39 739 3 HOH HOH . 
G 4 HOH A 40 740 24 HOH HOH . 
G 4 HOH A 41 741 140 HOH HOH . 
G 4 HOH A 42 742 27 HOH HOH . 
G 4 HOH A 43 743 43 HOH HOH . 
G 4 HOH A 44 744 73 HOH HOH . 
G 4 HOH A 45 745 104 HOH HOH . 
G 4 HOH A 46 746 149 HOH HOH . 
G 4 HOH A 47 747 117 HOH HOH . 
G 4 HOH A 48 748 164 HOH HOH . 
G 4 HOH A 49 749 12 HOH HOH . 
G 4 HOH A 50 750 17 HOH HOH . 
G 4 HOH A 51 751 77 HOH HOH . 
G 4 HOH A 52 752 136 HOH HOH . 
G 4 HOH A 53 753 50 HOH HOH . 
G 4 HOH A 54 754 123 HOH HOH . 
G 4 HOH A 55 755 141 HOH HOH . 
G 4 HOH A 56 756 103 HOH HOH . 
G 4 HOH A 57 757 125 HOH HOH . 
G 4 HOH A 58 758 26 HOH HOH . 
G 4 HOH A 59 759 169 HOH HOH . 
G 4 HOH A 60 760 31 HOH HOH . 
G 4 HOH A 61 761 69 HOH HOH . 
G 4 HOH A 62 762 130 HOH HOH . 
G 4 HOH A 63 763 120 HOH HOH . 
G 4 HOH A 64 764 10 HOH HOH . 
G 4 HOH A 65 765 156 HOH HOH . 
G 4 HOH A 66 766 94 HOH HOH . 
G 4 HOH A 67 767 153 HOH HOH . 
G 4 HOH A 68 768 134 HOH HOH . 
G 4 HOH A 69 769 172 HOH HOH . 
G 4 HOH A 70 770 147 HOH HOH . 
G 4 HOH A 71 771 33 HOH HOH . 
G 4 HOH A 72 772 137 HOH HOH . 
G 4 HOH A 73 773 175 HOH HOH . 
G 4 HOH A 74 774 158 HOH HOH . 
G 4 HOH A 75 775 138 HOH HOH . 
G 4 HOH A 76 776 81 HOH HOH . 
G 4 HOH A 77 777 74 HOH HOH . 
G 4 HOH A 78 778 28 HOH HOH . 
H 4 HOH B 1 701 82 HOH HOH . 
H 4 HOH B 2 702 53 HOH HOH . 
H 4 HOH B 3 703 40 HOH HOH . 
H 4 HOH B 4 704 174 HOH HOH . 
H 4 HOH B 5 705 72 HOH HOH . 
H 4 HOH B 6 706 4 HOH HOH . 
H 4 HOH B 7 707 18 HOH HOH . 
H 4 HOH B 8 708 41 HOH HOH . 
H 4 HOH B 9 709 97 HOH HOH . 
H 4 HOH B 10 710 165 HOH HOH . 
H 4 HOH B 11 711 144 HOH HOH . 
H 4 HOH B 12 712 95 HOH HOH . 
H 4 HOH B 13 713 151 HOH HOH . 
H 4 HOH B 14 714 129 HOH HOH . 
H 4 HOH B 15 715 148 HOH HOH . 
H 4 HOH B 16 716 155 HOH HOH . 
H 4 HOH B 17 717 173 HOH HOH . 
H 4 HOH B 18 718 5 HOH HOH . 
H 4 HOH B 19 719 30 HOH HOH . 
H 4 HOH B 20 720 44 HOH HOH . 
H 4 HOH B 21 721 80 HOH HOH . 
H 4 HOH B 22 722 86 HOH HOH . 
H 4 HOH B 23 723 154 HOH HOH . 
H 4 HOH B 24 724 131 HOH HOH . 
H 4 HOH B 25 725 2 HOH HOH . 
H 4 HOH B 26 726 36 HOH HOH . 
H 4 HOH B 27 727 65 HOH HOH . 
H 4 HOH B 28 728 101 HOH HOH . 
H 4 HOH B 29 729 47 HOH HOH . 
H 4 HOH B 30 730 63 HOH HOH . 
H 4 HOH B 31 731 112 HOH HOH . 
H 4 HOH B 32 732 51 HOH HOH . 
H 4 HOH B 33 733 34 HOH HOH . 
H 4 HOH B 34 734 157 HOH HOH . 
H 4 HOH B 35 735 16 HOH HOH . 
H 4 HOH B 36 736 145 HOH HOH . 
H 4 HOH B 37 737 168 HOH HOH . 
H 4 HOH B 38 738 121 HOH HOH . 
H 4 HOH B 39 739 35 HOH HOH . 
H 4 HOH B 40 740 32 HOH HOH . 
H 4 HOH B 41 741 23 HOH HOH . 
H 4 HOH B 42 742 20 HOH HOH . 
H 4 HOH B 43 743 8 HOH HOH . 
H 4 HOH B 44 744 1 HOH HOH . 
H 4 HOH B 45 745 59 HOH HOH . 
H 4 HOH B 46 746 67 HOH HOH . 
H 4 HOH B 47 747 76 HOH HOH . 
H 4 HOH B 48 748 166 HOH HOH . 
H 4 HOH B 49 749 48 HOH HOH . 
H 4 HOH B 50 750 139 HOH HOH . 
H 4 HOH B 51 751 92 HOH HOH . 
H 4 HOH B 52 752 37 HOH HOH . 
H 4 HOH B 53 753 55 HOH HOH . 
H 4 HOH B 54 754 150 HOH HOH . 
H 4 HOH B 55 755 90 HOH HOH . 
H 4 HOH B 56 756 22 HOH HOH . 
H 4 HOH B 57 757 96 HOH HOH . 
H 4 HOH B 58 758 87 HOH HOH . 
H 4 HOH B 59 759 52 HOH HOH . 
H 4 HOH B 60 760 84 HOH HOH . 
H 4 HOH B 61 761 132 HOH HOH . 
H 4 HOH B 62 762 114 HOH HOH . 
H 4 HOH B 63 763 70 HOH HOH . 
H 4 HOH B 64 764 57 HOH HOH . 
H 4 HOH B 65 765 66 HOH HOH . 
H 4 HOH B 66 766 161 HOH HOH . 
H 4 HOH B 67 767 167 HOH HOH . 
H 4 HOH B 68 768 58 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -44.133 
_atom_site.Cartn_y               12.22 
_atom_site.Cartn_z               9.684 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        62.94 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#