data_5VDV # _model_server_result.job_id wq62JOFdPMtnxAdwdqXG7g _model_server_result.datetime_utc '2024-12-03 05:05:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5VDV # _exptl.entry_id 5VDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.43 _cell.angle_gamma 90 _cell.entry_id 5VDV _cell.length_a 217.448 _cell.length_b 46.953 _cell.length_c 89.733 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 231 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A SG CYS 237 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A SG CYS 238 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 A SG CYS 245 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 B NE2 HIS 231 B HIS 390 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B SG CYS 237 B CYS 396 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc7 B SG CYS 238 B CYS 397 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc8 B SG CYS 245 B CYS 404 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VDV _atom_sites.fract_transf_matrix[1][1] 0.004599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 9BV A 1 602 1 9BV PFE . E 2 ZN B 1 601 601 ZN ZN . F 4 SO4 B 1 602 1 SO4 SO4 . G 3 9BV B 1 603 1 9BV PFE . H 3 9BV B 1 604 1 9BV PFE . I 5 HOH A 1 701 140 HOH HOH . I 5 HOH A 2 702 21 HOH HOH . I 5 HOH A 3 703 136 HOH HOH . I 5 HOH A 4 704 135 HOH HOH . I 5 HOH A 5 705 119 HOH HOH . I 5 HOH A 6 706 134 HOH HOH . I 5 HOH A 7 707 7 HOH HOH . I 5 HOH A 8 708 142 HOH HOH . I 5 HOH A 9 709 130 HOH HOH . I 5 HOH A 10 710 88 HOH HOH . I 5 HOH A 11 711 143 HOH HOH . I 5 HOH A 12 712 110 HOH HOH . I 5 HOH A 13 713 117 HOH HOH . I 5 HOH A 14 714 43 HOH HOH . I 5 HOH A 15 715 83 HOH HOH . I 5 HOH A 16 716 122 HOH HOH . I 5 HOH A 17 717 57 HOH HOH . I 5 HOH A 18 718 147 HOH HOH . I 5 HOH A 19 719 79 HOH HOH . I 5 HOH A 20 720 139 HOH HOH . I 5 HOH A 21 721 127 HOH HOH . I 5 HOH A 22 722 121 HOH HOH . I 5 HOH A 23 723 40 HOH HOH . I 5 HOH A 24 724 63 HOH HOH . I 5 HOH A 25 725 64 HOH HOH . I 5 HOH A 26 726 19 HOH HOH . I 5 HOH A 27 727 78 HOH HOH . I 5 HOH A 28 728 16 HOH HOH . I 5 HOH A 29 729 131 HOH HOH . I 5 HOH A 30 730 25 HOH HOH . I 5 HOH A 31 731 138 HOH HOH . I 5 HOH A 32 732 100 HOH HOH . I 5 HOH A 33 733 111 HOH HOH . I 5 HOH A 34 734 132 HOH HOH . I 5 HOH A 35 735 34 HOH HOH . I 5 HOH A 36 736 26 HOH HOH . I 5 HOH A 37 737 23 HOH HOH . J 5 HOH B 1 701 144 HOH HOH . J 5 HOH B 2 702 67 HOH HOH . J 5 HOH B 3 703 129 HOH HOH . J 5 HOH B 4 704 36 HOH HOH . J 5 HOH B 5 705 27 HOH HOH . J 5 HOH B 6 706 124 HOH HOH . J 5 HOH B 7 707 20 HOH HOH . J 5 HOH B 8 708 71 HOH HOH . J 5 HOH B 9 709 125 HOH HOH . J 5 HOH B 10 710 107 HOH HOH . J 5 HOH B 11 711 74 HOH HOH . J 5 HOH B 12 712 145 HOH HOH . J 5 HOH B 13 713 146 HOH HOH . J 5 HOH B 14 714 137 HOH HOH . J 5 HOH B 15 715 141 HOH HOH . J 5 HOH B 16 716 114 HOH HOH . J 5 HOH B 17 717 126 HOH HOH . J 5 HOH B 18 718 96 HOH HOH . J 5 HOH B 19 719 32 HOH HOH . J 5 HOH B 20 720 113 HOH HOH . J 5 HOH B 21 721 39 HOH HOH . J 5 HOH B 22 722 133 HOH HOH . J 5 HOH B 23 723 80 HOH HOH . J 5 HOH B 24 724 29 HOH HOH . J 5 HOH B 25 725 103 HOH HOH . J 5 HOH B 26 726 99 HOH HOH . J 5 HOH B 27 727 98 HOH HOH . J 5 HOH B 28 728 86 HOH HOH . J 5 HOH B 29 729 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -44.835 _atom_site.Cartn_y 11.183 _atom_site.Cartn_z 9.845 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.62 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #