data_5VDV # _model_server_result.job_id sKgdJBQ79sfCGRk_DCpJGg _model_server_result.datetime_utc '2024-12-01 20:48:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":604}' # _entry.id 5VDV # _exptl.entry_id 5VDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 187.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description tetrazolo[5,1-b]quinazolin-9-ol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.43 _cell.angle_gamma 90 _cell.entry_id 5VDV _cell.length_a 217.448 _cell.length_b 46.953 _cell.length_c 89.733 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 231 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A SG CYS 237 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A SG CYS 238 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 A SG CYS 245 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 B NE2 HIS 231 B HIS 390 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B SG CYS 237 B CYS 396 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc7 B SG CYS 238 B CYS 397 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc8 B SG CYS 245 B CYS 404 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C8 H5 N5 O' _chem_comp.formula_weight 187.158 _chem_comp.id 9BV _chem_comp.mon_nstd_flag . _chem_comp.name tetrazolo[5,1-b]quinazolin-9-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 9BV sing 1 n y C1 C6 9BV doub 2 n y C2 C3 9BV doub 3 n y C6 C5 9BV sing 4 n y C3 C4 9BV sing 5 n y C5 C4 9BV sing 6 n y C5 C7 9BV doub 7 n y C4 N10 9BV doub 8 n y O14 C7 9BV sing 9 n n C7 N8 9BV sing 10 n y N10 C9 9BV sing 11 n y N8 C9 9BV sing 12 n y N8 N13 9BV sing 13 n y C9 N11 9BV doub 14 n y N13 N12 9BV doub 15 n y N11 N12 9BV sing 16 n y C6 HC6 9BV sing 17 n n C1 HC1 9BV sing 18 n n C2 HC2 9BV sing 19 n n C3 HC3 9BV sing 20 n n O14 HO14 9BV sing 21 n n # _atom_sites.entry_id 5VDV _atom_sites.fract_transf_matrix[1][1] 0.004599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 9BV A 1 602 1 9BV PFE . E 2 ZN B 1 601 601 ZN ZN . F 4 SO4 B 1 602 1 SO4 SO4 . G 3 9BV B 1 603 1 9BV PFE . H 3 9BV B 1 604 1 9BV PFE . I 5 HOH A 1 701 140 HOH HOH . I 5 HOH A 2 702 21 HOH HOH . I 5 HOH A 3 703 136 HOH HOH . I 5 HOH A 4 704 135 HOH HOH . I 5 HOH A 5 705 119 HOH HOH . I 5 HOH A 6 706 134 HOH HOH . I 5 HOH A 7 707 7 HOH HOH . I 5 HOH A 8 708 142 HOH HOH . I 5 HOH A 9 709 130 HOH HOH . I 5 HOH A 10 710 88 HOH HOH . I 5 HOH A 11 711 143 HOH HOH . I 5 HOH A 12 712 110 HOH HOH . I 5 HOH A 13 713 117 HOH HOH . I 5 HOH A 14 714 43 HOH HOH . I 5 HOH A 15 715 83 HOH HOH . I 5 HOH A 16 716 122 HOH HOH . I 5 HOH A 17 717 57 HOH HOH . I 5 HOH A 18 718 147 HOH HOH . I 5 HOH A 19 719 79 HOH HOH . I 5 HOH A 20 720 139 HOH HOH . I 5 HOH A 21 721 127 HOH HOH . I 5 HOH A 22 722 121 HOH HOH . I 5 HOH A 23 723 40 HOH HOH . I 5 HOH A 24 724 63 HOH HOH . I 5 HOH A 25 725 64 HOH HOH . I 5 HOH A 26 726 19 HOH HOH . I 5 HOH A 27 727 78 HOH HOH . I 5 HOH A 28 728 16 HOH HOH . I 5 HOH A 29 729 131 HOH HOH . I 5 HOH A 30 730 25 HOH HOH . I 5 HOH A 31 731 138 HOH HOH . I 5 HOH A 32 732 100 HOH HOH . I 5 HOH A 33 733 111 HOH HOH . I 5 HOH A 34 734 132 HOH HOH . I 5 HOH A 35 735 34 HOH HOH . I 5 HOH A 36 736 26 HOH HOH . I 5 HOH A 37 737 23 HOH HOH . J 5 HOH B 1 701 144 HOH HOH . J 5 HOH B 2 702 67 HOH HOH . J 5 HOH B 3 703 129 HOH HOH . J 5 HOH B 4 704 36 HOH HOH . J 5 HOH B 5 705 27 HOH HOH . J 5 HOH B 6 706 124 HOH HOH . J 5 HOH B 7 707 20 HOH HOH . J 5 HOH B 8 708 71 HOH HOH . J 5 HOH B 9 709 125 HOH HOH . J 5 HOH B 10 710 107 HOH HOH . J 5 HOH B 11 711 74 HOH HOH . J 5 HOH B 12 712 145 HOH HOH . J 5 HOH B 13 713 146 HOH HOH . J 5 HOH B 14 714 137 HOH HOH . J 5 HOH B 15 715 141 HOH HOH . J 5 HOH B 16 716 114 HOH HOH . J 5 HOH B 17 717 126 HOH HOH . J 5 HOH B 18 718 96 HOH HOH . J 5 HOH B 19 719 32 HOH HOH . J 5 HOH B 20 720 113 HOH HOH . J 5 HOH B 21 721 39 HOH HOH . J 5 HOH B 22 722 133 HOH HOH . J 5 HOH B 23 723 80 HOH HOH . J 5 HOH B 24 724 29 HOH HOH . J 5 HOH B 25 725 103 HOH HOH . J 5 HOH B 26 726 99 HOH HOH . J 5 HOH B 27 727 98 HOH HOH . J 5 HOH B 28 728 86 HOH HOH . J 5 HOH B 29 729 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9BV . . . H 3 -52.74 0.762 42.081 1 106.59 ? C4 9BV 604 B 1 HETATM 2 C C7 9BV . . . H 3 -52.578 2.963 43.166 1 101.14 ? C7 9BV 604 B 1 HETATM 3 C C6 9BV . . . H 3 -54.691 1.678 43.212 1 103.98 ? C6 9BV 604 B 1 HETATM 4 C C9 9BV . . . H 3 -50.74 1.869 41.97 1 104.86 ? C9 9BV 604 B 1 HETATM 5 C C1 9BV . . . H 3 -55.41 0.572 42.871 1 108.66 ? C1 9BV 604 B 1 HETATM 6 C C2 9BV . . . H 3 -54.83 -0.448 42.141 1 109.68 ? C2 9BV 604 B 1 HETATM 7 C C3 9BV . . . H 3 -53.523 -0.369 41.748 1 109.35 ? C3 9BV 604 B 1 HETATM 8 C C5 9BV . . . H 3 -53.333 1.812 42.829 1 102.74 ? C5 9BV 604 B 1 HETATM 9 N N8 9BV . . . H 3 -51.283 2.983 42.733 1 102.29 ? N8 9BV 604 B 1 HETATM 10 N N10 9BV . . . H 3 -51.439 0.8 41.655 1 104.82 ? N10 9BV 604 B 1 HETATM 11 N N11 9BV . . . H 3 -49.434 2.275 41.729 1 106.2 ? N11 9BV 604 B 1 HETATM 12 N N12 9BV . . . H 3 -49.192 3.483 42.271 1 103.88 ? N12 9BV 604 B 1 HETATM 13 N N13 9BV . . . H 3 -50.279 3.924 42.873 1 101.67 ? N13 9BV 604 B 1 HETATM 14 O O14 9BV . . . H 3 -53.124 3.93 43.844 1 102.52 ? O14 9BV 604 B 1 HETATM 15 H HC6 9BV . . . H 3 -55.16 2.475 43.788 1 124.77 ? HC6 9BV 604 B 1 HETATM 16 H HC1 9BV . . . H 3 -56.453 0.488 43.175 1 130.4 ? HC1 9BV 604 B 1 HETATM 17 H HC2 9BV . . . H 3 -55.42 -1.324 41.877 1 131.61 ? HC2 9BV 604 B 1 HETATM 18 H HC3 9BV . . . H 3 -53.061 -1.171 41.173 1 131.22 ? HC3 9BV 604 B 1 HETATM 19 H HO14 9BV . . . H 3 -52.496 4.679 44.018 1 123.02 ? HO14 9BV 604 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #